RchiOBHm_Chr1g0322141

cardiolipin acyl-chain remodeling

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
9607599 .. 9614803
7205 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1293 bp
ATGGCTGCTGCGAGGGTTGAGCACGGAGATCTGTGGAAGAGCAACGCCCTCTCCGTACAGCGCCGGATCAGGGAGCGGTTCAGAGTCGAGGTGGACTGCCGATTCAGGCACCACCCGATTTTCGCCGACGGCTACTTCGCCTCTACCGTGCAGCGGTGGCTCCAGCGGTTCCGTGATTTCAAGAGGGACTCGCTTCAGTCCTCCACCGTCTTCTATCGCCAACGAGTGGGCAAGGAAATCAACGCTGAAGAAGAGTCGGCCATTCTTCGCATGGTGCAAGCTGTTGCTGTGCCGGTCATTGGCAATGTTTGCCATGTGTTCATGAATGGATTAAATCGTGTTCAGGTCTATGGTTTAGAAAAATTTCATGACGCGTTGCTACGCAGACCCAAAGACAGGCCTCTTATAACGGTTAGCAATCATGTGGCTTCTATGGATGATCCGCTTGTTATTGCTGCGCTGCTTCCTCCAAATGTTCTTCTGGATGCTAAGAACTTGAGGTGGACACTCTGTGCATCTGATAGGTGTTTTTCGAATCCTGTAACTTCAGCATTTTTCCGATCTGTCAAAGTCTTGCCAGTTGCTCGTGGTGATGGGATTTATCAAAAGGGTATGGACATTGCTATTTCAAAATTAAATCAAGGTGGCTGGGTTCACATCTTCCCAGAAGGTAGTCGTTCTCGAGATGGTGGTAAAACCCTGGGGTCACCCAAGAGAGGTGTTGGGAGGTTGGTCCTTGATGCTGACAATATTCCCATGGTTATTCCATTTGTACATAGCGGGATGCAGGACATCATGCCTATTGGTGCCAGTTTCCCGAGGATTGGCAAGAGGGTGACGGTGGTTATTGGTGATCCAATCTACTTTGATGATTTGCTAAATAATGAAGGAGCAAAGCATTTATCAAGAGGAAAGTTATATGATGCAGTATCCTCAAGAATCGGTCATCGATTACGTCAACTGAAAGTTCAGGTTGACAAATTGACTAAAGGGACACAATTACTAAATGATGGTTCACTGATAGAAGAAACTCCAGAACTAGTTGTTGCCGGTACACAAGAGCCCAGGTCTTTTGATCGGTTCCGAGTGGGTTTCTCAAAAGATGGCTGGATTGCATCAAGGATGCGTAGTTTTATGGAACCTACTGAGCTGATGGGATTTGCAGCCAGAGGCTTATTTGTGAACCGTAGAGCAGTTGAAACCTCTGAAAGTGGTAGTAGAAGGGTTGGCCCGTTGAAAGCATGGAACCAATTTCTTGAAGCCAATGTACTACCAAGATGGAACTGTGCCTGA

Protein Analysis

430

Amino Acids

48.42

Weight (kDa)

10.03

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 113 - 258 7.5e-18 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 407
AccB1I GGYRCC 2 cut(s) 108, 806
AccB7I CCANNNNNTGG 1 cut(s) 226
AccBSI CCGCTC 1 cut(s) 76
AccII CGCG 1 cut(s) 374
AciI CCGC 5 cut(s) 76, 154, 166, 443, 780
AclWI GGATC 3 cut(s) 74, 434, 848
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 1 cut(s) 362
AcuI CTGAAG 3 cut(s) 179, 267, 531
AdeI CACNNNGTG 1 cut(s) 512
AfaI GTAC 4 cut(s) 57, 774, 1054, 1269
AfiI CCNNNNNNNGG 7 cut(s) 70, 153, 226, 299, 396, 716, 824
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 5 cut(s) 181, 630, 1199, 1237, 1259
AhlI ACTAGT 1 cut(s) 1039
AjnI CCWGG 2 cut(s) 699, 1064
AluBI AGCT 2 cut(s) 281, 1150
AluI AGCT 2 cut(s) 281, 1150
Alw21I GWGCWC 1 cut(s) 24
AlwI GGATC 3 cut(s) 74, 434, 848
Ama87I CYCGRG 2 cut(s) 681, 817
AoxI GGCC 3 cut(s) 258, 398, 1228
ApeKI GCWGC 6 cut(s) 5, 8, 151, 455, 460, 1163
ApoI RAATTY 1 cut(s) 362
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 2 cut(s) 63, 460
AspS9I GGNCC 2 cut(s) 733, 1229
AsuHPI GGTGA 4 cut(s) 602, 699, 847, 863
AsuII TTCGAA 1 cut(s) 533
AvaI CYCGRG 2 cut(s) 681, 817
AvaII GGWCC 1 cut(s) 733
BanI GGYRCC 2 cut(s) 108, 806
BanII GRGCYC 1 cut(s) 1065
BarI GAAGNNNNNNTAC 2 cut(s) 1251, 1283
BauI CACGAG 1 cut(s) 585
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 4 cut(s) 163, 442, 447, 1175
BccI CCATC 6 cut(s) 587, 680, 1004, 1097, 1147, 1272
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 2 cut(s) 701, 1066
BciVI GTATCC 1 cut(s) 940
BcuI ACTAGT 1 cut(s) 1039
BfaI CTAG 1 cut(s) 1040
BfoI RGCGCY 1 cut(s) 64
BfuI GTATCC 1 cut(s) 940
BglII AGATCT 1 cut(s) 28
BisI GCNGC 6 cut(s) 6, 9, 152, 456, 461, 1164
BlsI GCNGC 6 cut(s) 7, 10, 153, 457, 462, 1165
Bme1390I CCNGG 2 cut(s) 701, 1066
Bme18I GGWCC 1 cut(s) 733
BmeT110I CYCGRG 2 cut(s) 681, 817
BmgT120I GGNCC 2 cut(s) 733, 1229
BmiI GGNNCC 7 cut(s) 110, 161, 170, 808, 1082, 1140, 1247
BmrFI CCNGG 2 cut(s) 701, 1066
BmsI GCATC 7 cut(s) 475, 524, 730, 774, 913, 1113, 1124
BpiI GAAGAC 1 cut(s) 202
BpmI CTGGAG 2 cut(s) 146, 1017
Bpu14I TTCGAA 1 cut(s) 533
BpuEI CTTGAG 2 cut(s) 517, 919
Bsa29I ATCGAT 1 cut(s) 949
BsaJI CCNNGG 5 cut(s) 699, 700, 756, 818, 1064
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 7 cut(s) 70, 153, 226, 299, 396, 716, 824
Bse118I RCCGGY 2 cut(s) 292, 1049
Bse1I ACTGG 2 cut(s) 578, 810
Bse3DI GCAATG 2 cut(s) 310, 618
BseBI CCWGG 2 cut(s) 701, 1066
BseCI ATCGAT 1 cut(s) 949
BseDI CCNNGG 5 cut(s) 699, 700, 756, 818, 1064
BseGI GGATG 4 cut(s) 442, 490, 789, 1128
BseLI CCNNNNNNNGG 7 cut(s) 70, 153, 226, 299, 396, 716, 824
BseMI GCAATG 2 cut(s) 310, 618
BseMII CTCAG 1 cut(s) 1137
BseNI ACTGG 2 cut(s) 578, 810
BseXI GCAGC 4 cut(s) 163, 442, 447, 1175
BseYI CCCAGC 1 cut(s) 648
BsgI GTGCAG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 374
BshFI GGCC 3 cut(s) 260, 400, 1230
BshNI GGYRCC 2 cut(s) 108, 806
BshVI ATCGAT 1 cut(s) 949
BsiHKAI GWGCWC 1 cut(s) 24
BsiHKCI CYCGRG 2 cut(s) 681, 817
BsiSI CCGG 3 cut(s) 64, 293, 1050
BslFI GGGAC 2 cut(s) 200, 1006
BslI CCNNNNNNNGG 7 cut(s) 70, 153, 226, 299, 396, 716, 824
BsmFI GGGAC 2 cut(s) 200, 1006
BsnI GGCC 3 cut(s) 260, 400, 1230
BsoBI CYCGRG 2 cut(s) 681, 817
Bsp119I TTCGAA 1 cut(s) 533
Bsp1286I GDGCHC 2 cut(s) 24, 1065
Bsp1407I TGTACA 1 cut(s) 772
Bsp143I GATC 6 cut(s) 28, 66, 439, 560, 853, 1075
Bsp19I CCATGG 1 cut(s) 756
BspACI CCGC 5 cut(s) 76, 154, 166, 443, 780
BspANI GGCC 3 cut(s) 260, 400, 1230
BspCNI CTCAG 1 cut(s) 1138
BspDI ATCGAT 1 cut(s) 949
BspFNI CGCG 1 cut(s) 374
BspHI TCATGA 2 cut(s) 321, 367
BspLI GGNNCC 7 cut(s) 110, 161, 170, 808, 1082, 1140, 1247
BspPI GGATC 3 cut(s) 74, 434, 848
BspQI GCTCTTC 1 cut(s) 32
BspT104I TTCGAA 1 cut(s) 533
BspT107I GGYRCC 2 cut(s) 108, 806
BsrBI CCGCTC 1 cut(s) 76
BsrDI GCAATG 2 cut(s) 310, 618
BsrFI RCCGGY 2 cut(s) 292, 1049
BsrGI TGTACA 1 cut(s) 772
BsrI ACTGG 2 cut(s) 578, 810
BssAI RCCGGY 2 cut(s) 292, 1049
BssECI CCNNGG 5 cut(s) 699, 700, 756, 818, 1064
BssMI GATC 6 cut(s) 28, 66, 439, 560, 853, 1075
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 1 cut(s) 756
Bst2BI CACGAG 1 cut(s) 585
Bst2UI CCWGG 2 cut(s) 701, 1066
Bst4CI ACNGT 6 cut(s) 148, 208, 412, 841, 1187, 1286
Bst6I CTCTTC 2 cut(s) 32, 246
BstAPI GCANNNNNTGC 1 cut(s) 309
BstAUI TGTACA 1 cut(s) 772
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 2 cut(s) 489, 1146
BstDSI CCRYGG 1 cut(s) 756
BstEII GGTNACC 1 cut(s) 705
BstF5I GGATG 4 cut(s) 442, 490, 789, 1128
BstFNI CGCG 1 cut(s) 374
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 2 cut(s) 63, 460
BstKTI GATC 6 cut(s) 31, 69, 442, 563, 856, 1078
BstMBI GATC 6 cut(s) 28, 66, 439, 560, 853, 1075
BstMWI GCNNNNNNNGC 2 cut(s) 157, 309
BstNI CCWGG 2 cut(s) 701, 1066
BstPI GGTNACC 1 cut(s) 705
BstSCI CCNGG 2 cut(s) 699, 1064
BstUI CGCG 1 cut(s) 374
BstV1I GCAGC 4 cut(s) 163, 442, 447, 1175
BstV2I GAAGAC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 949
BsuI GTATCC 1 cut(s) 940
BsuRI GGCC 3 cut(s) 260, 400, 1230
BsuTUI ATCGAT 1 cut(s) 949
BtgI CCRYGG 1 cut(s) 756
BtsCI GGATG 4 cut(s) 442, 490, 789, 1128
BtsIMutI CAGTG 1 cut(s) 1016
Cac8I GCNNGC 1 cut(s) 279
CciI TCATGA 2 cut(s) 321, 367
CfoI GCGC 2 cut(s) 63, 460
Cfr10I RCCGGY 2 cut(s) 292, 1049
Cfr13I GGNCC 2 cut(s) 733, 1229
ClaI ATCGAT 1 cut(s) 949
CseI GACGC 1 cut(s) 380
Csp6I GTAC 4 cut(s) 56, 773, 1053, 1268
CviAII CATG 8 cut(s) 271, 314, 322, 368, 422, 757, 796, 1242
CviQI GTAC 4 cut(s) 56, 773, 1053, 1268
DdeI CTNAG 2 cut(s) 489, 1146
DpnI GATC 6 cut(s) 30, 68, 441, 562, 855, 1077
DpnII GATC 6 cut(s) 28, 66, 439, 560, 853, 1075
DraIII CACNNNGTG 1 cut(s) 512
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 2 cut(s) 32, 246
EarI CTCTTC 2 cut(s) 32, 246
Eco130I CCWWGG 1 cut(s) 756
Eco147I AGGCCT 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 1065
Eco47I GGWCC 1 cut(s) 733
Eco57I CTGAAG 3 cut(s) 179, 267, 531
Eco88I CYCGRG 2 cut(s) 681, 817
Eco91I GGTNACC 1 cut(s) 705
EcoO65I GGTNACC 1 cut(s) 705
EcoRII CCWGG 2 cut(s) 699, 1064
EcoT14I CCWWGG 1 cut(s) 756
EcoT38I GRGCYC 1 cut(s) 1065
ErhI CCWWGG 1 cut(s) 756
FaeI CATG 8 cut(s) 274, 317, 325, 371, 425, 760, 799, 1245
FaqI GGGAC 2 cut(s) 200, 1006
FatI CATG 8 cut(s) 270, 313, 321, 367, 421, 756, 795, 1241
FauI CCCGC 1 cut(s) 773
Fnu4HI GCNGC 6 cut(s) 6, 9, 152, 456, 461, 1164
FokI GGATG 4 cut(s) 449, 497, 796, 1135
FriOI GRGCYC 1 cut(s) 1065
Fsp4HI GCNGC 6 cut(s) 6, 9, 152, 456, 461, 1164
FspBI CTAG 1 cut(s) 1040
GlaI GCGC 2 cut(s) 62, 459
GluI GCNGC 6 cut(s) 6, 9, 152, 456, 461, 1164
GsaI CCCAGC 1 cut(s) 652
GsuI CTGGAG 2 cut(s) 146, 1017
HaeII RGCGCY 1 cut(s) 64
HaeIII GGCC 3 cut(s) 260, 400, 1230
HapII CCGG 3 cut(s) 64, 293, 1050
HgaI GACGC 1 cut(s) 380
HhaI GCGC 2 cut(s) 63, 460
Hin1II CATG 8 cut(s) 274, 317, 325, 371, 425, 760, 799, 1245
Hin6I GCGC 2 cut(s) 61, 458
HinP1I GCGC 2 cut(s) 61, 458
HincII GTYRAC 2 cut(s) 959, 976
HindII GTYRAC 2 cut(s) 959, 976
HinfI GANTC 6 cut(s) 84, 102, 188, 254, 535, 939
HpaII CCGG 3 cut(s) 64, 293, 1050
HphI GGTGA 4 cut(s) 602, 699, 847, 863
Hpy166II GTNNAC 8 cut(s) 94, 504, 655, 959, 976, 1016, 1055, 1183
Hpy188I TCNGA 5 cut(s) 83, 520, 560, 1085, 1207
Hpy8I GTNNAC 8 cut(s) 94, 504, 655, 959, 976, 1016, 1055, 1183
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 3 cut(s) 662, 881, 1215
HpyCH4III ACNGT 6 cut(s) 148, 208, 412, 841, 1187, 1286
HpyCH4IV ACGT 1 cut(s) 955
HpyCH4V TGCA 7 cut(s) 151, 277, 515, 787, 926, 1115, 1163
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 309
HpyF3I CTNAG 2 cut(s) 489, 1146
HpySE526I ACGT 1 cut(s) 955
Hsp92II CATG 8 cut(s) 274, 317, 325, 371, 425, 760, 799, 1245
HspAI GCGC 2 cut(s) 61, 458
Kzo9I GATC 6 cut(s) 28, 66, 439, 560, 853, 1075
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 3 cut(s) 73, 165, 890
Lsp1109I GCAGC 4 cut(s) 163, 442, 447, 1175
LweI GCATC 7 cut(s) 475, 524, 730, 774, 913, 1113, 1124
MaeI CTAG 1 cut(s) 1040
MaeII ACGT 1 cut(s) 955
MaeIII GTNAC 3 cut(s) 541, 705, 835
MalI GATC 6 cut(s) 30, 68, 441, 562, 855, 1077
MbiI CCGCTC 1 cut(s) 76
MboI GATC 6 cut(s) 28, 66, 439, 560, 853, 1075
MboII GAAGA 8 cut(s) 49, 202, 257, 260, 263, 470, 652, 1037
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 2 cut(s) 24, 1065
MluCI AATT 5 cut(s) 362, 632, 980, 998, 1250
MluI ACGCGT 1 cut(s) 372
MlyI GAGTC 3 cut(s) 93, 182, 263
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 2 cut(s) 332, 635
MspA1I CMGCKG 2 cut(s) 154, 166
MspI CCGG 3 cut(s) 64, 293, 1050
MspR9I CCNGG 2 cut(s) 701, 1066
MvaI CCWGG 2 cut(s) 701, 1066
MvnI CGCG 1 cut(s) 374
MwoI GCNNNNNNNGC 2 cut(s) 157, 309
NcoI CCATGG 1 cut(s) 756
NdeII GATC 6 cut(s) 28, 66, 439, 560, 853, 1075
NlaIII CATG 8 cut(s) 274, 317, 325, 371, 425, 760, 799, 1245
NlaIV GGNNCC 7 cut(s) 110, 161, 170, 808, 1082, 1140, 1247
NmuCI GTSAC 2 cut(s) 705, 835
NspV TTCGAA 1 cut(s) 533
PaeR7I CTCGAG 1 cut(s) 681
PagI TCATGA 2 cut(s) 321, 367
PasI CCCWGGG 1 cut(s) 700
PceI AGGCCT 1 cut(s) 400
PciSI GCTCTTC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 144
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 3 cut(s) 102, 535, 939
PflMI CCANNNNNTGG 1 cut(s) 226
PkrI GCNGC 6 cut(s) 7, 10, 153, 457, 462, 1165
PleI GAGTC 3 cut(s) 92, 182, 262
PpsI GAGTC 3 cut(s) 92, 182, 262
PsiI TTATAA 1 cut(s) 407
Psp6I CCWGG 2 cut(s) 699, 1064
PspEI GGTNACC 1 cut(s) 705
PspFI CCCAGC 1 cut(s) 648
PspGI CCWGG 2 cut(s) 699, 1064
PspN4I GGNNCC 7 cut(s) 110, 161, 170, 808, 1082, 1140, 1247
PspPI GGNCC 2 cut(s) 733, 1229
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 4 cut(s) 57, 774, 1054, 1269
RsaNI GTAC 4 cut(s) 56, 773, 1053, 1268
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 332, 635
SatI GCNGC 6 cut(s) 6, 9, 152, 456, 461, 1164
Sau3AI GATC 6 cut(s) 28, 66, 439, 560, 853, 1075
Sau96I GGNCC 2 cut(s) 733, 1229
SchI GAGTC 3 cut(s) 93, 182, 263
ScrFI CCNGG 2 cut(s) 701, 1066
SduI GDGCHC 2 cut(s) 24, 1065
SfaNI GCATC 7 cut(s) 475, 524, 730, 774, 913, 1113, 1124
Sfr274I CTCGAG 1 cut(s) 681
SfuI TTCGAA 1 cut(s) 533
SinI GGWCC 1 cut(s) 733
SlaI CTCGAG 1 cut(s) 681
SmlI CTYRAG 3 cut(s) 496, 681, 934
SmoI CTYRAG 3 cut(s) 496, 681, 934
SpeI ACTAGT 1 cut(s) 1039
Sse9I AATT 5 cut(s) 362, 632, 980, 998, 1250
SseBI AGGCCT 1 cut(s) 400
SsiI CCGC 5 cut(s) 76, 154, 166, 443, 780
SspI AATATT 1 cut(s) 751
SspMI CTAG 1 cut(s) 1040
StuI AGGCCT 1 cut(s) 400
StyD4I CCNGG 2 cut(s) 699, 1064
StyI CCWWGG 1 cut(s) 756
TaaI ACNGT 6 cut(s) 148, 208, 412, 841, 1187, 1286
TaiI ACGT 1 cut(s) 958
TaqI TCGA 4 cut(s) 87, 533, 682, 949
TaqII GACCGA 1 cut(s) 932
TasI AATT 5 cut(s) 362, 632, 980, 998, 1250
TatI WGTACW 2 cut(s) 772, 1267
TfiI GAWTC 3 cut(s) 102, 535, 939
Tru1I TTAA 2 cut(s) 332, 635
Tru9I TTAA 2 cut(s) 332, 635
TscAI CASTG 1 cut(s) 1023
TseFI GTSAC 2 cut(s) 705, 835
TseI GCWGC 6 cut(s) 5, 8, 151, 455, 460, 1163
Tsp45I GTSAC 2 cut(s) 705, 835
TspDTI ATGAA 4 cut(s) 310, 338, 356, 900
TspGWI ACGGA 3 cut(s) 39, 43, 161
TspRI CASTG 1 cut(s) 1023
Van91I CCANNNNNTGG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 733
XapI RAATTY 1 cut(s) 362
XcmI CCANNNNNNNNNTGG 1 cut(s) 268
XhoI CTCGAG 1 cut(s) 681
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.