Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003921

Physical Location & Seq

Genomic Coordinates Reverse (-)

28055022 .. 28057183

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGGTTCAAGTGGTGCTGTTGCTGACACCAATTACAGAGAAAATAAAGCAACAGAAACCCATGATCAATACCTGCAGAAAGGAGTGAGACACTTGTGTGAAGGAGGGCTGACTAGAGTTCCAACCAAGTACATACTGCCCAAGGAGGAACGACCCAATTCAGCAATAGGAGGAGAGACTATTCTCAAGTTACCAGTTATTGATTTCGCTCAGTTGCAAGGCTCCAGCAGCAGATCCCAAGCATTGAACTCCCTCGCAAAAGCTTGCGAAGAATTTGGAATTTTTCAGTTGATAAACCATGGTATCACAGATGAAGTTATATCAACAATGACTGATGTAAGTAAAAGGTTTTTTGAGCTTCCTTTCGATGAGAGATCAACGTACATGTCAAAGGATATGGCTTCCCCAGCTAGGTATGGAACAAGCTTTAACCAAAACAATGATGAAGTGTTCTGCTGGAGAGACTTTCTCAAGCTTAGTTGCCATCCTTTATCAGACAGTGTTCCTTCTTGGCCATCATCTCCTGTGGACCTAAGGGAAACAGTAGTGAACTATTCAAAGAACACGAATTTTTTGTATCTAGAGCTGTTGGAGGCTGTCATGGAGAGCCTTGGATTGATGGAAACTACAGAGAGTTCTGGTACAGACAAAATAGACACCAGGACCAGTACTTTAGATGAATTTGAAGATGGAAGCCAACTGATTGTGGTGAATTGCTACCCTGCATGCCCTGAACCTGATTTAACCCTAGGCATTCCACCTCATTCTGATTATGGCATCCTCACTCTTCTCCTTCAAGACCAAGTCCAGGGTCTTCAAATACAGCACCAAGGAAAATGGGTGACCGTGGAACCACTTCCGAATTCATTCATCGTCAACGTTGGTGATCATCTTGAGATATTTAGCAATGGGAGATACAAAAGCGTGCTGCATAGGGTTGTTGTCAACTCATCCAAGTCTCGAATCTCTGTTGCTTCATTGCACAGCATGCCATTCGACACCGTTGTTCGGCCTTCACCTAAACTCGTCGACGAAGCCAACCCTATTCGTTACAGGGACACAGACTTTGCCAATTTTCTCGAGTATATTGCTTCGCGTGACCACCAGACGAACAGTAAGAGTTTCTTGCAATCGAGGAAATTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

382

Amino Acids

42.83

Weight (kDa)

5.27

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	64 - 170	2e-27	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	233 - 327	8.8e-36	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36690 AT2G36690
fragaria_vesca	FvH4_6g17160 FvH4_7g06780 FvH4_7g06780
malus_domestica	MD07G1074700.v1.1 MD12G1103300.v1.1
prunus_persica	Prupe.2G095000_v2.0.a1 Prupe.7G123400_v2.0.a1 Prupe.7G123400_v2.0.a1
pyrus_communis	pycom07g05870 pycom12g10180
rosa_chinensis	RchiOBHm_Chr1g0336381 RchiOBHm_Chr3g0471251
rosa_laevigata	RLG00000024194 RLG00000029370
rosa_multiflora	Rmu_sc0000393.1_g000004 Rmu_sc0000393.1_g000005 Rmu_sc0004870.1_g000002 Rmu_sc0005261.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315710 Rroxscaffold_6G00410170
rosa_rugosa	Rorug01G0125400 Rorug03G0116300
rosa_samantha	Rh1AG144600 Rh1BG114200 Rh1CG136100 Rh1DG151300 Rh3AG165700 Rh3BG191100 Rh3CG181400 Rh3DG184600
rosa_wichuraiana	Rw1G011860 Rw3G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	1029
AccII	CGCG	1 cut(s)	1096
AclI	AACGTT	1 cut(s)	879
AclWI	GGATC	1 cut(s)	228
AcoI	YGGCCR	1 cut(s)	512
AcsI	RAATTY	5 cut(s)	272, 279, 568, 680, 862
AfaI	GTAC	4 cut(s)	131, 383, 643, 670
AfiI	CCNNNNNNNGG	3 cut(s)	411, 808, 1008
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	6 cut(s)	9, 247, 558, 686, 797, 818
AjnI	CCWGG	2 cut(s)	659, 807
AleI	CACNNNNGTG	1 cut(s)	96
AluBI	AGCT	6 cut(s)	263, 358, 410, 426, 475, 586
AluI	AGCT	6 cut(s)	263, 358, 410, 426, 475, 586
Alw26I	GTCTC	4 cut(s)	82, 170, 456, 963
AlwI	GGATC	1 cut(s)	228
Ama87I	CYCGRG	1 cut(s)	1079
AoxI	GGCC	2 cut(s)	512, 1010
ApeKI	GCWGC	2 cut(s)	228, 928
ApoI	RAATTY	5 cut(s)	272, 279, 568, 680, 862
ArsI	GACNNNNNNTTYG	2 cut(s)	1049, 1081
Asp700I	GAANNNNTTC	2 cut(s)	855, 866
AspA2I	CCTAGG	1 cut(s)	748
AspS9I	GGNCC	2 cut(s)	529, 663
AsuHPI	GGTGA	4 cut(s)	721, 853, 896, 1008
AvaI	CYCGRG	1 cut(s)	1079
AvaII	GGWCC	2 cut(s)	529, 663
AvrII	CCTAGG	1 cut(s)	748
AxyI	CCTNAGG	1 cut(s)	533
BaeI	ACNNNNGTAYC	2 cut(s)	286, 319
BalI	TGGCCA	1 cut(s)	514
BbsI	GAAGAC	1 cut(s)	806
BbvI	GCAGC	2 cut(s)	240, 915
BccI	CCATC	4 cut(s)	492, 523, 613, 683
BcgI	CGANNNNNNTGC	4 cut(s)	976, 1010, 1070, 1104
BciT130I	CCWGG	2 cut(s)	661, 809
BclI	TGATCA	2 cut(s)	64, 886
BcoDI	GTCTC	4 cut(s)	82, 170, 456, 963
BfaI	CTAG	4 cut(s)	114, 411, 581, 749
BfmI	CTRYAG	2 cut(s)	74, 627
BfuAI	ACCTGC	1 cut(s)	81
BisI	GCNGC	2 cut(s)	229, 929
BlnI	CCTAGG	1 cut(s)	748
BlsI	GCNGC	2 cut(s)	230, 930
BmcAI	AGTACT	1 cut(s)	670
Bme1390I	CCNGG	2 cut(s)	661, 809
Bme18I	GGWCC	2 cut(s)	529, 663
BmeT110I	CYCGRG	1 cut(s)	1079
BmgT120I	GGNCC	2 cut(s)	529, 663
BmiI	GGNNCC	2 cut(s)	223, 852
BmrFI	CCNGG	2 cut(s)	661, 809
BmsI	GCATC	1 cut(s)	786
BpiI	GAAGAC	1 cut(s)	806
BplI	GAGNNNNNCTC	2 cut(s)	453, 485
BpmI	CTGGAG	2 cut(s)	208, 478
BpuEI	CTTGAG	3 cut(s)	170, 455, 914
BsaJI	CCNNGG	7 cut(s)	141, 298, 610, 748, 808, 829, 846
Bsc4I	CCNNNNNNNGG	3 cut(s)	411, 808, 1008
Bse1I	ACTGG	2 cut(s)	194, 666
Bse21I	CCTNAGG	1 cut(s)	533
Bse3DI	GCAATG	2 cut(s)	913, 977
BseBI	CCWGG	2 cut(s)	661, 809
BseDI	CCNNGG	7 cut(s)	141, 298, 610, 748, 808, 829, 846
BseGI	GGATG	3 cut(s)	484, 777, 950
BseLI	CCNNNNNNNGG	3 cut(s)	411, 808, 1008
BseMI	GCAATG	2 cut(s)	913, 977
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	2 cut(s)	194, 666
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	240, 915
BseYI	CCCAGC	1 cut(s)	406
Bsh1236I	CGCG	1 cut(s)	1096
BshFI	GGCC	2 cut(s)	514, 1012
BsiHKCI	CYCGRG	1 cut(s)	1079
BslFI	GGGAC	1 cut(s)	1070
BslI	CCNNNNNNNGG	3 cut(s)	411, 808, 1008
BsmAI	GTCTC	4 cut(s)	82, 170, 456, 963
BsmFI	GGGAC	1 cut(s)	1070
BsmI	GAATGC	1 cut(s)	753
BsnI	GGCC	2 cut(s)	514, 1012
BsoBI	CYCGRG	1 cut(s)	1079
Bsp143I	GATC	4 cut(s)	64, 233, 374, 886
Bsp19I	CCATGG	1 cut(s)	298
BspANI	GGCC	2 cut(s)	514, 1012
BspCNI	CTCAG	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	1096
BspLI	GGNNCC	2 cut(s)	223, 852
BspMAI	CTGCAG	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	81
BspPI	GGATC	1 cut(s)	228
BsrDI	GCAATG	2 cut(s)	913, 977
BsrI	ACTGG	2 cut(s)	194, 666
BssECI	CCNNGG	7 cut(s)	141, 298, 610, 748, 808, 829, 846
BssMI	GATC	4 cut(s)	64, 233, 374, 886
BssT1I	CCWWGG	5 cut(s)	141, 298, 610, 748, 829
Bst2UI	CCWGG	2 cut(s)	661, 809
Bst4CI	ACNGT	5 cut(s)	500, 544, 847, 1003, 1115
Bst6I	CTCTTC	1 cut(s)	792
BstAPI	GCANNNNNTGC	1 cut(s)	988
BstC8I	GCNNGC	4 cut(s)	265, 727, 926, 989
BstDEI	CTNAG	3 cut(s)	210, 476, 533
BstDSI	CCRYGG	2 cut(s)	298, 846
BstEII	GGTNACC	1 cut(s)	841
BstF5I	GGATG	3 cut(s)	484, 777, 950
BstFNI	CGCG	1 cut(s)	1096
BstKTI	GATC	4 cut(s)	67, 236, 377, 889
BstMAI	GTCTC	4 cut(s)	82, 170, 456, 963
BstMBI	GATC	4 cut(s)	64, 233, 374, 886
BstMWI	GCNNNNNNNGC	3 cut(s)	228, 407, 988
BstNI	CCWGG	2 cut(s)	661, 809
BstNSI	RCATGY	3 cut(s)	388, 729, 991
BstPI	GGTNACC	1 cut(s)	841
BstSCI	CCNGG	2 cut(s)	659, 807
BstSFI	CTRYAG	2 cut(s)	74, 627
BstUI	CGCG	1 cut(s)	1096
BstV1I	GCAGC	2 cut(s)	240, 915
BstV2I	GAAGAC	1 cut(s)	806
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
Bsu36I	CCTNAGG	1 cut(s)	533
BsuRI	GGCC	2 cut(s)	514, 1012
BtgI	CCRYGG	2 cut(s)	298, 846
BtsCI	GGATG	3 cut(s)	484, 777, 950
BtsIMutI	CAGTG	1 cut(s)	505
BveI	ACCTGC	1 cut(s)	81
Cac8I	GCNNGC	4 cut(s)	265, 727, 926, 989
Cfr13I	GGNCC	2 cut(s)	529, 663
Csp6I	GTAC	4 cut(s)	130, 382, 642, 669
CviAII	CATG	6 cut(s)	62, 299, 385, 601, 726, 988
CviQI	GTAC	4 cut(s)	130, 382, 642, 669
DdeI	CTNAG	3 cut(s)	210, 476, 533
DpnI	GATC	4 cut(s)	66, 235, 376, 888
DpnII	GATC	4 cut(s)	64, 233, 374, 886
EaeI	YGGCCR	1 cut(s)	512
Eam1104I	CTCTTC	1 cut(s)	792
EarI	CTCTTC	1 cut(s)	792
Eco130I	CCWWGG	5 cut(s)	141, 298, 610, 748, 829
Eco47I	GGWCC	2 cut(s)	529, 663
Eco81I	CCTNAGG	1 cut(s)	533
Eco88I	CYCGRG	1 cut(s)	1079
Eco91I	GGTNACC	1 cut(s)	841
EcoO65I	GGTNACC	1 cut(s)	841
EcoRI	GAATTC	1 cut(s)	862
EcoRII	CCWGG	2 cut(s)	659, 807
EcoT14I	CCWWGG	5 cut(s)	141, 298, 610, 748, 829
ErhI	CCWWGG	5 cut(s)	141, 298, 610, 748, 829
FaeI	CATG	6 cut(s)	65, 302, 388, 604, 729, 991
FalI	AAGNNNNNCTT	2 cut(s)	1109, 1141
FaqI	GGGAC	1 cut(s)	1070
FatI	CATG	6 cut(s)	61, 298, 384, 600, 725, 987
FbaI	TGATCA	2 cut(s)	64, 886
FblI	GTMKAC	1 cut(s)	1029
Fnu4HI	GCNGC	2 cut(s)	229, 929
FokI	GGATG	3 cut(s)	471, 764, 937
Fsp4HI	GCNGC	2 cut(s)	229, 929
FspBI	CTAG	4 cut(s)	114, 411, 581, 749
GluI	GCNGC	2 cut(s)	229, 929
GsaI	CCCAGC	1 cut(s)	410
GsuI	CTGGAG	2 cut(s)	208, 478
HaeIII	GGCC	2 cut(s)	514, 1012
Hin1II	CATG	6 cut(s)	65, 302, 388, 604, 729, 991
HincII	GTYRAC	3 cut(s)	877, 946, 1030
HindII	GTYRAC	3 cut(s)	877, 946, 1030
HindIII	AAGCTT	3 cut(s)	261, 424, 473
HinfI	GANTC	1 cut(s)	963
HphI	GGTGA	4 cut(s)	721, 853, 896, 1008
Hpy166II	GTNNAC	5 cut(s)	529, 550, 877, 946, 1030
Hpy188I	TCNGA	3 cut(s)	496, 769, 861
Hpy188III	TCNNGA	5 cut(s)	581, 797, 893, 960, 1079
Hpy8I	GTNNAC	5 cut(s)	529, 550, 877, 946, 1030
Hpy99I	CGWCG	2 cut(s)	1031, 1034
HpyAV	CCTTC	4 cut(s)	95, 516, 803, 1023
HpyCH4III	ACNGT	5 cut(s)	500, 544, 847, 1003, 1115
HpyCH4IV	ACGT	2 cut(s)	380, 879
HpyCH4V	TGCA	6 cut(s)	76, 217, 725, 931, 982, 1129
HpyF10VI	GCNNNNNNNGC	3 cut(s)	228, 407, 988
HpyF3I	CTNAG	3 cut(s)	210, 476, 533
HpySE526I	ACGT	2 cut(s)	380, 879
Hsp92II	CATG	6 cut(s)	65, 302, 388, 604, 729, 991
Ksp22I	TGATCA	2 cut(s)	64, 886
Kzo9I	GATC	4 cut(s)	64, 233, 374, 886
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	2 cut(s)	240, 915
LweI	GCATC	1 cut(s)	786
MaeI	CTAG	4 cut(s)	114, 411, 581, 749
MaeII	ACGT	2 cut(s)	380, 879
MaeIII	GTNAC	4 cut(s)	189, 841, 1049, 1097
MalI	GATC	4 cut(s)	66, 235, 376, 888
MboI	GATC	4 cut(s)	64, 233, 374, 886
MboII	GAAGA	4 cut(s)	281, 698, 779, 806
MflI	RGATCY	1 cut(s)	233
MlsI	TGGCCA	1 cut(s)	514
MluNI	TGGCCA	1 cut(s)	514
MmeI	TCCRAC	2 cut(s)	146, 570
MnlI	CCTC	8 cut(s)	98, 139, 164, 263, 586, 771, 791, 1128
Mox20I	TGGCCA	1 cut(s)	514
MroXI	GAANNNNTTC	2 cut(s)	855, 866
MscI	TGGCCA	1 cut(s)	514
MseI	TTAA	2 cut(s)	429, 743
MslI	CAYNNNNRTG	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	514
MspR9I	CCNGG	2 cut(s)	661, 809
Mva1269I	GAATGC	1 cut(s)	753
MvaI	CCWGG	2 cut(s)	661, 809
MvnI	CGCG	1 cut(s)	1096
MwoI	GCNNNNNNNGC	3 cut(s)	228, 407, 988
NcoI	CCATGG	1 cut(s)	298
NdeII	GATC	4 cut(s)	64, 233, 374, 886
NlaIII	CATG	6 cut(s)	65, 302, 388, 604, 729, 991
NlaIV	GGNNCC	2 cut(s)	223, 852
NmuCI	GTSAC	2 cut(s)	841, 1097
NspI	RCATGY	3 cut(s)	388, 729, 991
OliI	CACNNNNGTG	1 cut(s)	96
PaeI	GCATGC	2 cut(s)	729, 991
PaeR7I	CTCGAG	1 cut(s)	1079
PciI	ACATGT	1 cut(s)	384
PctI	GAATGC	1 cut(s)	753
PdmI	GAANNNNTTC	2 cut(s)	855, 866
PfeI	GAWTC	1 cut(s)	963
PflFI	GACNNNGTC	1 cut(s)	803
PkrI	GCNGC	2 cut(s)	230, 930
PscI	ACATGT	1 cut(s)	384
Psp1406I	AACGTT	1 cut(s)	879
Psp6I	CCWGG	2 cut(s)	659, 807
PspEI	GGTNACC	1 cut(s)	841
PspFI	CCCAGC	1 cut(s)	406
PspGI	CCWGG	2 cut(s)	659, 807
PspN4I	GGNNCC	2 cut(s)	223, 852
PspPI	GGNCC	2 cut(s)	529, 663
PstI	CTGCAG	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	233
PsyI	GACNNNGTC	1 cut(s)	803
RsaI	GTAC	4 cut(s)	131, 383, 643, 670
RsaNI	GTAC	4 cut(s)	130, 382, 642, 669
RseI	CAYNNNNRTG	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	1028
SaqAI	TTAA	2 cut(s)	429, 743
SatI	GCNGC	2 cut(s)	229, 929
Sau3AI	GATC	4 cut(s)	64, 233, 374, 886
Sau96I	GGNCC	2 cut(s)	529, 663
ScaI	AGTACT	1 cut(s)	670
ScrFI	CCNGG	2 cut(s)	661, 809
SfaNI	GCATC	1 cut(s)	786
SfcI	CTRYAG	2 cut(s)	74, 627
Sfr274I	CTCGAG	1 cut(s)	1079
SgrDI	CGTCGACG	1 cut(s)	1028
SinI	GGWCC	2 cut(s)	529, 663
SlaI	CTCGAG	1 cut(s)	1079
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	4 cut(s)	185, 470, 893, 1079
SmoI	CTYRAG	4 cut(s)	185, 470, 893, 1079
SphI	GCATGC	2 cut(s)	729, 991
SspMI	CTAG	4 cut(s)	114, 411, 581, 749
StyD4I	CCNGG	2 cut(s)	659, 807
StyI	CCWWGG	5 cut(s)	141, 298, 610, 748, 829
TaaI	ACNGT	5 cut(s)	500, 544, 847, 1003, 1115
TaiI	ACGT	2 cut(s)	383, 882
TaqI	TCGA	6 cut(s)	366, 961, 996, 1029, 1080, 1133
TatI	WGTACW	2 cut(s)	129, 668
TfiI	GAWTC	1 cut(s)	963
Tru1I	TTAA	2 cut(s)	429, 743
Tru9I	TTAA	2 cut(s)	429, 743
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	2 cut(s)	841, 1097
TseI	GCWGC	2 cut(s)	228, 928
Tsp45I	GTSAC	2 cut(s)	841, 1097
TspDTI	ATGAA	6 cut(s)	327, 459, 693, 855, 859, 966
TspRI	CASTG	1 cut(s)	505
Tth111I	GACNNNGTC	1 cut(s)	803
VpaK11BI	GGWCC	2 cut(s)	529, 663
XapI	RAATTY	5 cut(s)	272, 279, 568, 680, 862
XbaI	TCTAGA	1 cut(s)	580
XceI	RCATGY	3 cut(s)	388, 729, 991
XhoI	CTCGAG	1 cut(s)	1079
XmaJI	CCTAGG	1 cut(s)	748
XmiI	GTMKAC	1 cut(s)	1029
XmnI	GAANNNNTTC	2 cut(s)	855, 866
XspI	CTAG	4 cut(s)	114, 411, 581, 749
ZrmI	AGTACT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.