Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003755

Physical Location & Seq

Genomic Coordinates Reverse (-)

29780050 .. 29782996

Gene Structure 2947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAGTCAGGCGGATACAACTGTTGAAAGCCTCCGGAATTTGTCAGGTTATCTTGGTGCAGCTAAGCGGACAGGAGTTGACTCCGTCTTTCTGCCATCAGATGTTCAGAGTAACATTGACACGACTATAACGAAACTCAACTCTGCTGCCTCTAAACTTTGTAATACAACTGAAAAGAATTCAAATCGTATAGATGATGGATTGGATAGCGTAAGACTGGCTCTCATTGTCCTTGCTGCTGTTATGCTCTGTATGGCCTTTCTTGGATTTTGTAACTTGGTGATTATTGGGTGGATTCTTGTTGCCGGCACATTCATTTTGTGTGGTGTATTTCTTCTCCTCCATCATGTGGTTGCAGATGCATGTGTTTCCATGGATGAATGGGTCCAGCACCCCACTGCCTGTACTGCTTTAGATGATCTACTCCCTTGTGTGGACAATGCTACTGCTCAAGAGACTTCATCACTCACCAAGGATACAACCTACAAACTTGTGAGCATGGTAGACAAGGTCATTAACAATATCTCAAATCTTAACAATCCACCACCCCAACTTGGACCGTTATATTTCAATCAGTCTGGCCCTCTATTACCTGTTCTTTGCAACCCATACAACACCGATCTCACTGATCGCAAGTGTGCCTCTGGTGAGGTGGGACTGCAGAATGCCACACAGGTGTGGAAGAGTTATGTGTGTAAAGTTAATACGGCAGGCATCTGTATAACTCCTGGACGGTTGACTCCCATCTTCTACGACCAAATGGAAGCTGCAGTAAATGTGAGTTATGGTCTGTATACTTATGGTCCATTCTTGGTTGATCTGCAAGACTGCACATTTGTCAGGGACACAGTCACCGACATAAGTAATGGGAATTGTCCTGGCCTTCGAAAACATAGCAGCTGGATCTACATTGGGCTGGTAATGGTATCTGCAGCAGTCATGTTATCGTTGATCTTGGAAATGGACCTGTTATCATGCCCGGTATGCTATGAACCGCTAATTCGAAAAGGCCCAACTGGTCTCAACTTGCAAGCAATATACAGGTCGGTTTTCGAATGCAAGAAATGCCACCAGTCTTATTCAAGCAATATACAGGTCTGTTTTTGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

370

Amino Acids

40.3

Weight (kDa)

5.21

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G12400
fragaria_vesca	FvH4_1g01880
malus_domestica	MD02G1016700.v1.1 MD15G1161200.v1.1
prunus_persica	Prupe.7G256400_v2.0.a1
pyrus_communis	pycom02g01500 pycom02g01540 pycom15g14490
rosa_chinensis	RchiOBHm_Chr1g0337751 RchiOBHm_Chr1g0337811 RchiOBHm_Chr1g0337821 RchiOBHm_Chr2g0086851 RchiOBHm_Chr2g0086861
rosa_laevigata	RLG00000015810
rosa_multiflora	Rmu_sc0002772.1_g000003 Rmu_sc0007954.1_g000003 Rmu_sc0009188.1_g000008 Rmu_sc0012638.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154080 Rroxscaffold_4G00314220
rosa_rugosa	Rorug01G0135600.1 Rorug01G0135700.1 Rorug01G0470300
rosa_samantha	Rh1DG162800 Rh1DG162900 Rh2AG022900 Rh2AG023000 Rh2BG023600 Rh2CG023800 Rh2CG023900 Rh2DG023400 Rh2DG023500
rosa_wichuraiana	Rw1G012710 Rw2G001810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccI	GTMKAC	2 cut(s)	504, 794
AccIII	TCCGGA	1 cut(s)	33
AciI	CCGC	3 cut(s)	11, 67, 995
AclWI	GGATC	1 cut(s)	911
AcsI	RAATTY	2 cut(s)	37, 178
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	3 cut(s)	349, 433, 554
AgsI	TTSAA	4 cut(s)	26, 183, 571, 1083
AjnI	CCWGG	2 cut(s)	727, 877
AleI	CACNNNNGTG	2 cut(s)	674, 676
AluBI	AGCT	3 cut(s)	62, 767, 900
AluI	AGCT	3 cut(s)	62, 767, 900
Alw26I	GTCTC	2 cut(s)	449, 1025
AlwI	GGATC	1 cut(s)	911
Aor13HI	TCCGGA	1 cut(s)	33
AoxI	GGCC	4 cut(s)	255, 580, 880, 1009
ApeKI	GCWGC	6 cut(s)	59, 146, 236, 767, 897, 932
ApoI	RAATTY	2 cut(s)	37, 178
ArsI	GACNNNNNNTTYG	2 cut(s)	818, 850
AspS9I	GGNCC	6 cut(s)	385, 557, 581, 803, 964, 1010
AsuC2I	CCSGG	1 cut(s)	980
AsuHPI	GGTGA	4 cut(s)	292, 460, 659, 844
AsuII	TTCGAA	3 cut(s)	886, 1003, 1053
AvaII	GGWCC	4 cut(s)	385, 557, 803, 964
BaeI	ACNNNNGTAYC	1 cut(s)	39
BbvI	GCAGC	6 cut(s)	71, 133, 223, 754, 909, 944
BccI	CCATC	4 cut(s)	103, 191, 351, 752
BceAI	ACGGC	1 cut(s)	723
BciT130I	CCWGG	2 cut(s)	729, 879
BciVI	GTATCC	2 cut(s)	7, 469
BcnI	CCSGG	1 cut(s)	980
BcoDI	GTCTC	2 cut(s)	449, 1025
BfmI	CTRYAG	3 cut(s)	659, 768, 930
BfuI	GTATCC	2 cut(s)	7, 469
BisI	GCNGC	6 cut(s)	60, 147, 237, 768, 898, 933
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	6 cut(s)	61, 148, 238, 769, 899, 934
Bme1390I	CCNGG	3 cut(s)	729, 879, 980
Bme18I	GGWCC	4 cut(s)	385, 557, 803, 964
BmgT120I	GGNCC	6 cut(s)	385, 557, 581, 803, 964, 1010
BmiI	GGNNCC	1 cut(s)	386
BmrFI	CCNGG	3 cut(s)	729, 879, 980
BmsI	GCATC	2 cut(s)	349, 723
Bpu1102I	GCTNAGC	1 cut(s)	63
Bpu14I	TTCGAA	3 cut(s)	886, 1003, 1053
BpuEI	CTTGAG	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	980
BsaI	GGTCTC	1 cut(s)	1025
BsaJI	CCNNGG	2 cut(s)	372, 471
BsaWI	WCCGGW	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	3 cut(s)	349, 433, 554
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	3 cut(s)	222, 1021, 1072
BseAI	TCCGGA	1 cut(s)	33
BseBI	CCWGG	2 cut(s)	729, 879
BseDI	CCNNGG	2 cut(s)	372, 471
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	3 cut(s)	349, 433, 554
BseNI	ACTGG	3 cut(s)	222, 1021, 1072
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	6 cut(s)	71, 133, 223, 754, 909, 944
BsgI	GTGCAG	2 cut(s)	78, 814
BshFI	GGCC	4 cut(s)	257, 582, 882, 1011
BsiSI	CCGG	3 cut(s)	34, 306, 980
BslFI	GGGAC	2 cut(s)	669, 857
BslI	CCNNNNNNNGG	3 cut(s)	349, 433, 554
BsmAI	GTCTC	2 cut(s)	449, 1025
BsmFI	GGGAC	2 cut(s)	669, 857
BsmI	GAATGC	2 cut(s)	670, 1061
BsnI	GGCC	4 cut(s)	257, 582, 882, 1011
Bso31I	GGTCTC	1 cut(s)	1025
Bsp119I	TTCGAA	3 cut(s)	886, 1003, 1053
Bsp13I	TCCGGA	1 cut(s)	33
Bsp143I	GATC	6 cut(s)	418, 619, 628, 817, 903, 951
Bsp1720I	GCTNAGC	1 cut(s)	63
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	3 cut(s)	11, 67, 995
BspANI	GGCC	4 cut(s)	257, 582, 882, 1011
BspEI	TCCGGA	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	386
BspMAI	CTGCAG	3 cut(s)	663, 772, 934
BspPI	GGATC	1 cut(s)	911
BspT104I	TTCGAA	3 cut(s)	886, 1003, 1053
BspTNI	GGTCTC	1 cut(s)	1025
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	3 cut(s)	222, 1021, 1072
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	372, 471
BssMI	GATC	6 cut(s)	418, 619, 628, 817, 903, 951
BssNAI	GTATAC	1 cut(s)	795
BssT1I	CCWWGG	2 cut(s)	372, 471
Bst1107I	GTATAC	1 cut(s)	795
Bst2UI	CCWGG	2 cut(s)	729, 879
Bst4CI	ACNGT	4 cut(s)	22, 561, 735, 850
Bst6I	CTCTTC	1 cut(s)	677
BstAPI	GCANNNNNTGC	1 cut(s)	1065
BstBI	TTCGAA	3 cut(s)	886, 1003, 1053
BstC8I	GCNNGC	3 cut(s)	307, 712, 1032
BstDEI	CTNAG	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	382
BstKTI	GATC	6 cut(s)	421, 622, 631, 820, 906, 954
BstMAI	GTCTC	2 cut(s)	449, 1025
BstMBI	GATC	6 cut(s)	418, 619, 628, 817, 903, 951
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 984, 1065
BstNI	CCWGG	2 cut(s)	729, 879
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	3 cut(s)	727, 877, 978
BstSFI	CTRYAG	3 cut(s)	659, 768, 930
BstV1I	GCAGC	6 cut(s)	71, 133, 223, 754, 909, 944
BstX2I	RGATCY	1 cut(s)	903
BstYI	RGATCY	1 cut(s)	903
BstZ17I	GTATAC	1 cut(s)	795
BsuI	GTATCC	2 cut(s)	7, 469
BsuRI	GGCC	4 cut(s)	257, 582, 882, 1011
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	382
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	396, 624
Cac8I	GCNNGC	3 cut(s)	307, 712, 1032
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	6 cut(s)	385, 557, 581, 803, 964, 1010
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	6 cut(s)	347, 363, 373, 499, 940, 975
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	6 cut(s)	420, 621, 630, 819, 905, 953
DpnII	GATC	6 cut(s)	418, 619, 628, 817, 903, 951
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
EciI	GGCGGA	1 cut(s)	26
Eco130I	CCWWGG	2 cut(s)	372, 471
Eco31I	GGTCTC	1 cut(s)	1025
Eco47I	GGWCC	4 cut(s)	385, 557, 803, 964
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	727, 877
EcoT14I	CCWWGG	2 cut(s)	372, 471
EcoT22I	ATGCAT	1 cut(s)	364
ErhI	CCWWGG	2 cut(s)	372, 471
FaeI	CATG	6 cut(s)	350, 366, 376, 502, 943, 978
FaqI	GGGAC	2 cut(s)	669, 857
FatI	CATG	6 cut(s)	346, 362, 372, 498, 939, 974
FblI	GTMKAC	2 cut(s)	504, 794
Fnu4HI	GCNGC	6 cut(s)	60, 147, 237, 768, 898, 933
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	6 cut(s)	60, 147, 237, 768, 898, 933
GluI	GCNGC	6 cut(s)	60, 147, 237, 768, 898, 933
HaeIII	GGCC	4 cut(s)	257, 582, 882, 1011
HapII	CCGG	3 cut(s)	34, 306, 980
Hin1II	CATG	6 cut(s)	350, 366, 376, 502, 943, 978
HincII	GTYRAC	2 cut(s)	79, 738
HindII	GTYRAC	2 cut(s)	79, 738
HinfI	GANTC	4 cut(s)	4, 80, 295, 739
HpaII	CCGG	3 cut(s)	34, 306, 980
HphI	GGTGA	4 cut(s)	292, 460, 659, 844
Hpy166II	GTNNAC	5 cut(s)	79, 436, 505, 738, 795
Hpy188I	TCNGA	2 cut(s)	100, 108
Hpy188III	TCNNGA	2 cut(s)	34, 452
Hpy8I	GTNNAC	5 cut(s)	79, 436, 505, 738, 795
HpyAV	CCTTC	1 cut(s)	893
HpyCH4III	ACNGT	4 cut(s)	22, 561, 735, 850
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 984, 1065
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	6 cut(s)	350, 366, 376, 502, 943, 978
Kpn2I	TCCGGA	1 cut(s)	33
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
Kzo9I	GATC	6 cut(s)	418, 619, 628, 817, 903, 951
Lsp1109I	GCAGC	6 cut(s)	71, 133, 223, 754, 909, 944
LweI	GCATC	2 cut(s)	349, 723
MaeIII	GTNAC	3 cut(s)	110, 272, 850
MalI	GATC	6 cut(s)	420, 621, 630, 819, 905, 953
MboI	GATC	6 cut(s)	418, 619, 628, 817, 903, 951
MboII	GAAGA	3 cut(s)	326, 694, 739
MflI	RGATCY	1 cut(s)	903
MluCI	AATT	4 cut(s)	37, 178, 871, 999
MlyI	GAGTC	3 cut(s)	13, 74, 733
MnlI	CCTC	6 cut(s)	41, 160, 350, 594, 643, 652
Mph1103I	ATGCAT	1 cut(s)	364
MroI	TCCGGA	1 cut(s)	33
MroNI	GCCGGC	1 cut(s)	305
MseI	TTAA	3 cut(s)	516, 534, 702
MslI	CAYNNNNRTG	2 cut(s)	674, 676
MspA1I	CMGCKG	1 cut(s)	900
MspI	CCGG	3 cut(s)	34, 306, 980
MspR9I	CCNGG	3 cut(s)	729, 879, 980
Mva1269I	GAATGC	2 cut(s)	670, 1061
MvaI	CCWGG	2 cut(s)	729, 879
MwoI	GCNNNNNNNGC	3 cut(s)	407, 984, 1065
NaeI	GCCGGC	1 cut(s)	307
NciI	CCSGG	1 cut(s)	980
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	6 cut(s)	418, 619, 628, 817, 903, 951
NgoMIV	GCCGGC	1 cut(s)	305
NlaIII	CATG	6 cut(s)	350, 366, 376, 502, 943, 978
NlaIV	GGNNCC	1 cut(s)	386
NmuCI	GTSAC	1 cut(s)	850
NsiI	ATGCAT	1 cut(s)	364
NspI	RCATGY	1 cut(s)	366
NspV	TTCGAA	3 cut(s)	886, 1003, 1053
OliI	CACNNNNGTG	2 cut(s)	674, 676
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PctI	GAATGC	2 cut(s)	670, 1061
PdiI	GCCGGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	295
PflFI	GACNNNGTC	3 cut(s)	83, 509, 848
PflMI	CCANNNNNTGG	1 cut(s)	349
PfoI	TCCNGGA	1 cut(s)	727
PkrI	GCNGC	6 cut(s)	61, 148, 238, 769, 899, 934
PleI	GAGTC	3 cut(s)	12, 74, 733
PpsI	GAGTC	3 cut(s)	12, 74, 733
Psp6I	CCWGG	2 cut(s)	727, 877
PspGI	CCWGG	2 cut(s)	727, 877
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	6 cut(s)	385, 557, 581, 803, 964, 1010
PstI	CTGCAG	3 cut(s)	663, 772, 934
PsuI	RGATCY	1 cut(s)	903
PsyI	GACNNNGTC	3 cut(s)	83, 509, 848
PvuII	CAGCTG	1 cut(s)	900
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
RseI	CAYNNNNRTG	2 cut(s)	674, 676
SaqAI	TTAA	3 cut(s)	516, 534, 702
SatI	GCNGC	6 cut(s)	60, 147, 237, 768, 898, 933
Sau3AI	GATC	6 cut(s)	418, 619, 628, 817, 903, 951
Sau96I	GGNCC	6 cut(s)	385, 557, 581, 803, 964, 1010
SchI	GAGTC	3 cut(s)	13, 74, 733
ScrFI	CCNGG	3 cut(s)	729, 879, 980
SfaNI	GCATC	2 cut(s)	349, 723
SfcI	CTRYAG	3 cut(s)	659, 768, 930
SfuI	TTCGAA	3 cut(s)	886, 1003, 1053
SinI	GGWCC	4 cut(s)	385, 557, 803, 964
SmiMI	CAYNNNNRTG	2 cut(s)	674, 676
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
Sse9I	AATT	4 cut(s)	37, 178, 871, 999
SsiI	CCGC	3 cut(s)	11, 67, 995
StyD4I	CCNGG	3 cut(s)	727, 877, 978
StyI	CCWWGG	2 cut(s)	372, 471
TaaI	ACNGT	4 cut(s)	22, 561, 735, 850
TaqI	TCGA	3 cut(s)	886, 1003, 1053
TasI	AATT	4 cut(s)	37, 178, 871, 999
TatI	WGTACW	1 cut(s)	404
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	3 cut(s)	516, 534, 702
Tru9I	TTAA	3 cut(s)	516, 534, 702
TscAI	CASTG	2 cut(s)	403, 631
TseFI	GTSAC	1 cut(s)	850
TseI	GCWGC	6 cut(s)	59, 146, 236, 767, 897, 932
Tsp45I	GTSAC	1 cut(s)	850
TspDTI	ATGAA	4 cut(s)	304, 393, 450, 1005
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	2 cut(s)	403, 631
Tth111I	GACNNNGTC	3 cut(s)	83, 509, 848
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	4 cut(s)	385, 557, 803, 964
XapI	RAATTY	2 cut(s)	37, 178
XceI	RCATGY	1 cut(s)	366
XmiI	GTMKAC	2 cut(s)	504, 794
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.