RchiOBHm_Chr1g0337821

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003755
Physical Location & Seq
Reverse (-)
29782998 .. 29784336
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGACAATGGATACAAGAAGGTCTCTTGCGGATGAGAATCTGCAGAACTCGTCTCTGGTTCTGGCGAAGGAGAGGACTCGCAGGAAGGACCCTCTTGATGATTTTCATAAGTACACTGATGGATGGAATATCAGCAATGATCATTACTGGGCTTCTGTTGCTTGGACTGCGGTTCCCTTCTTTCTCATTGCTGGTCTGTGGTTCGTGATCTTTGGGCTAAGCTTGACACTTATTTGTTTCTGTTACTGCTGTTGCCCAAGAGAGCCTTATGTTTATTCGAGAACAGCCTATGTGCTCTCTCTCATCTTCCTTATCTTCTTCACTGTCGCGGCAATGTTACACTTCTCTCTCTCTCTCTCTCAATACACATACACACAGAAGTACAGCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

15.22

Weight (kDa)

7.63

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 329
AciI CCGC 3 cut(s) 29, 170, 329
AfaI GTAC 2 cut(s) 113, 383
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 27, 57
AspS9I GGNCC 1 cut(s) 88
AvaII GGWCC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 297
BccI CCATC 2 cut(s) 113, 117
BciVI GTATCC 1 cut(s) 4
BclI TGATCA 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 27, 57
BfmI CTRYAG 1 cut(s) 41
BfuI GTATCC 1 cut(s) 4
BisI GCNGC 1 cut(s) 330
BlpI GCTNAGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 331
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 2 cut(s) 90, 174
BmrI ACTGGG 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 157
Bpu1102I GCTNAGC 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 3 cut(s) 142, 186, 339
Bse8I GATNNNNATC 1 cut(s) 36
BseGI GGATG 2 cut(s) 37, 128
BseJI GATNNNNATC 1 cut(s) 36
BseMI GCAATG 3 cut(s) 142, 186, 339
BseNI ACTGG 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 329
BsiHKAI GWGCWC 1 cut(s) 297
BsmAI GTCTC 2 cut(s) 27, 57
BsmBI CGTCTC 1 cut(s) 57
Bso31I GGTCTC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 2 cut(s) 139, 207
Bsp1720I GCTNAGC 1 cut(s) 218
BspACI CCGC 3 cut(s) 29, 170, 329
BspFNI CGCG 1 cut(s) 329
BspLI GGNNCC 2 cut(s) 90, 174
BspMAI CTGCAG 1 cut(s) 45
BspTNI GGTCTC 1 cut(s) 27
BsrDI GCAATG 3 cut(s) 142, 186, 339
BsrI ACTGG 1 cut(s) 152
BssMI GATC 2 cut(s) 139, 207
Bst4CI ACNGT 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 218
BstF5I GGATG 2 cut(s) 37, 128
BstFNI CGCG 1 cut(s) 329
BstKTI GATC 2 cut(s) 142, 210
BstMAI GTCTC 2 cut(s) 27, 57
BstMBI GATC 2 cut(s) 139, 207
BstMWI GCNNNNNNNGC 2 cut(s) 158, 167
BstSFI CTRYAG 1 cut(s) 41
BstUI CGCG 1 cut(s) 329
BsuI GTATCC 1 cut(s) 4
BtsCI GGATG 2 cut(s) 37, 128
BtsIMutI CAGTG 2 cut(s) 114, 321
Cfr13I GGNCC 1 cut(s) 88
Csp6I GTAC 2 cut(s) 112, 382
CviJI RGCY 6 cut(s) 152, 217, 222, 265, 287, 387
CviKI_1 RGCY 6 cut(s) 152, 217, 222, 265, 287, 387
CviQI GTAC 2 cut(s) 112, 382
DdeI CTNAG 1 cut(s) 218
DpnI GATC 2 cut(s) 141, 209
DpnII GATC 2 cut(s) 139, 207
Eco31I GGTCTC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 88
Esp3I CGTCTC 1 cut(s) 57
FaiI YATR 5 cut(s) 108, 270, 291, 370, 391
FalI AAGNNNNNCTT 2 cut(s) 250, 282
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 2 cut(s) 44, 135
Fsp4HI GCNGC 1 cut(s) 330
GluI GCNGC 1 cut(s) 330
HindIII AAGCTT 1 cut(s) 220
HinfI GANTC 2 cut(s) 37, 76
Hpy166II GTNNAC 1 cut(s) 114
Hpy188III TCNNGA 3 cut(s) 95, 205, 279
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 4 cut(s) 12, 61, 79, 187
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4V TGCA 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 167
HpyF3I CTNAG 1 cut(s) 218
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 2 cut(s) 139, 207
LpnPI CCDG 5 cut(s) 41, 47, 67, 133, 177
MaeIII GTNAC 2 cut(s) 242, 336
MalI GATC 2 cut(s) 141, 209
MboI GATC 2 cut(s) 139, 207
MboII GAAGA 3 cut(s) 298, 307, 310
MhlI GDGCHC 1 cut(s) 297
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 2 cut(s) 66, 102
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 2 cut(s) 158, 167
NdeII GATC 2 cut(s) 139, 207
NlaIV GGNNCC 2 cut(s) 90, 174
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 88
Psp5II RGGWCCY 1 cut(s) 88
PspN4I GGNNCC 2 cut(s) 90, 174
PspPI GGNCC 1 cut(s) 88
PspPPI RGGWCCY 1 cut(s) 88
PstI CTGCAG 1 cut(s) 45
RsaI GTAC 2 cut(s) 113, 383
RsaNI GTAC 2 cut(s) 112, 382
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 2 cut(s) 139, 207
Sau96I GGNCC 1 cut(s) 88
SchI GAGTC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 297
SetI ASST 2 cut(s) 23, 224
SfcI CTRYAG 1 cut(s) 41
SinI GGWCC 1 cut(s) 88
SsiI CCGC 3 cut(s) 29, 170, 329
TaaI ACNGT 1 cut(s) 325
TaqI TCGA 1 cut(s) 278
TatI WGTACW 2 cut(s) 111, 381
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 1 cut(s) 37
TscAI CASTG 2 cut(s) 121, 328
TspDTI ATGAA 1 cut(s) 95
TspRI CASTG 2 cut(s) 121, 328
VpaK11BI GGWCC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.