RchiOBHm_Chr1g0342271

Belongs to the universal ribosomal protein uS12 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004940
Physical Location & Seq
Forward (+)
34188347 .. 34188778
432 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
ATGGGGAAGACACGTTATATGGAAGCTACCCGCAAGCTGAAGAACCACCATAGAAGACAAAGAAAGTGTGCTCGAGTTCAGCTTATCAAAAATGGAAAGAAGCAGATTGCTGCCTTTGTGCCAAATGATGGTTGCCTAAACTACATTGAAGAGAATGACGAGGTGCTCATTGCTGGATTTGGTCGTACGGGGCATTCTGTTGGTGCTATTCGTGGAGTCCATTTCAAGGTCGTGAAGGTTTCTGGAATATCACTTTTGGCACTCTTCAAGGAGAAAAAGGAGAAGCCAAGATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosom_S12_S23

Protein Analysis

98

Amino Acids

11.1

Weight (kDa)

10.42

Isoelectric Point (pI)

22.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosom_S12_S23 PF00164 19 - 97 6e-28 Ribosomal protein S12/S23
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 128
AciI CCGC 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 2 cut(s) 128, 226
AflIII ACRYGT 1 cut(s) 11
AgsI TTSAA 3 cut(s) 149, 226, 268
AluBI AGCT 3 cut(s) 26, 37, 82
AluI AGCT 3 cut(s) 26, 37, 82
Alw21I GWGCWC 2 cut(s) 73, 168
Ama87I CYCGRG 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 72
BbsI GAAGAC 2 cut(s) 14, 61
Bbv12I GWGCWC 2 cut(s) 73, 168
BbvI GCAGC 1 cut(s) 97
BccI CCATC 1 cut(s) 122
BglII AGATCT 1 cut(s) 290
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 72
BpiI GAAGAC 2 cut(s) 14, 61
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 226
Bse3DI GCAATG 1 cut(s) 168
BseLI CCNNNNNNNGG 2 cut(s) 128, 226
BseMI GCAATG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 97
BsiHKAI GWGCWC 2 cut(s) 73, 168
BsiHKCI CYCGRG 1 cut(s) 72
BsiWI CGTACG 1 cut(s) 185
BslI CCNNNNNNNGG 2 cut(s) 128, 226
BsmI GAATGC 1 cut(s) 193
BsoBI CYCGRG 1 cut(s) 72
Bsp1286I GDGCHC 2 cut(s) 73, 168
Bsp143I GATC 1 cut(s) 290
BspACI CCGC 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 168
BssMI GATC 1 cut(s) 290
Bst6I CTCTTC 2 cut(s) 144, 269
BstC8I GCNNGC 1 cut(s) 35
BstKTI GATC 1 cut(s) 293
BstMBI GATC 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 97
BstV2I GAAGAC 2 cut(s) 14, 61
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 186
CviJI RGCY 4 cut(s) 26, 37, 82, 286
CviKI_1 RGCY 4 cut(s) 26, 37, 82, 286
CviQI GTAC 1 cut(s) 186
DpnI GATC 1 cut(s) 292
DpnII GATC 1 cut(s) 290
Eam1104I CTCTTC 2 cut(s) 144, 269
EarI CTCTTC 2 cut(s) 144, 269
Eco57I CTGAAG 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 72
FaiI YATR 3 cut(s) 18, 20, 51
FauI CCCGC 1 cut(s) 38
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
HinfI GANTC 1 cut(s) 216
Hpy188III TCNNGA 2 cut(s) 232, 243
HpyAV CCTTC 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 13
HpySE526I ACGT 1 cut(s) 13
Kzo9I GATC 1 cut(s) 290
LpnPI CCDG 2 cut(s) 159, 228
Lsp1109I GCAGC 1 cut(s) 97
MaeII ACGT 1 cut(s) 13
MalI GATC 1 cut(s) 292
MboI GATC 1 cut(s) 290
MboII GAAGA 5 cut(s) 19, 52, 66, 161, 256
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 2 cut(s) 73, 168
MlyI GAGTC 1 cut(s) 225
MnlI CCTC 1 cut(s) 154
MseI TTAA 1 cut(s) 295
Mva1269I GAATGC 1 cut(s) 193
NdeII GATC 1 cut(s) 290
PaeR7I CTCGAG 1 cut(s) 72
PctI GAATGC 1 cut(s) 193
Pfl23II CGTACG 1 cut(s) 185
PflMI CCANNNNNTGG 1 cut(s) 128
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PspLI CGTACG 1 cut(s) 185
PspXI VCTCGAGB 1 cut(s) 72
PsuI RGATCY 1 cut(s) 290
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 295
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 290
SchI GAGTC 1 cut(s) 225
SduI GDGCHC 2 cut(s) 73, 168
SetI ASST 7 cut(s) 16, 28, 39, 84, 165, 231, 240
Sfr274I CTCGAG 1 cut(s) 72
SlaI CTCGAG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
SsiI CCGC 1 cut(s) 31
TaiI ACGT 1 cut(s) 16
TaqI TCGA 1 cut(s) 73
Tru1I TTAA 1 cut(s) 295
Tru9I TTAA 1 cut(s) 295
TseI GCWGC 1 cut(s) 110
Van91I CCANNNNNTGG 1 cut(s) 128
XhoI CTCGAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.