Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009942

Physical Location & Seq

Genomic Coordinates Forward (+)

46204023 .. 46207177

Gene Structure 3155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGAGGCGCCAACACAGTGTAAACATTTCGATACATTATCCAAAACAGGTTTCAGTCTCAGCTGAAAGCTCAAAAGAGCAAATGGCTTCGCCTTTGCCTTCTTCCCTCTCTCACTTCTCACTCCTCTCCAAACCCGCACCGCCCCAAAACCACCACCACCGCCTCCTCCTAGCCCCGACCCGACCCGCGTCTTCCGGGTTCCAATGCCGGGCCGGAACCGGGTTCTTCAACCGTCTCGGACGCCTCATAAAGGAGAAGGCCAAGAGCGACGTGGATAAGCTCTTCTCCGGGTTCTCCAAGACCCGCGACAATCTCGCCGTCATCGACGAGCTCCTCCTCTACTGGAACCTCGCCGACACCGATCGAGTCCTCGACGAGCTTGAAGAGGCTCTGCTGGTATCGGATTTTGGGCCCAAGATCACCATTAAGATTGTGGAGAGTTTGAGGGAGGATATAGTAGCTGGAAAGCTCAAGTCTGGAAGTGAAATAAAGGAGGCGTTGAAGAAGAATGTGCTGGATTTGTTGACTATAGAAGGGAAAACTGAGCTTCAGCTTGGATACAGGAAACCGGCTGTGGTTATGATTGTTGGGGTTAATGGAGGTGGGAAGACAACGTCTCTCGGAAAGCTGGCTTATAGATTAAAGAATGAAGGGGCAAAGGTATTGATGGCAGCAGGGGATACGTTTCGAGCTGCTGCCGGTGACCAGCTGGAGATATGGGCTGAGAGGACTGGGTGTGAGATAGTTATGGCTGAAAAAGAGAAGGCCAAAGCAGCAACAGTTATTTCTCAGGCTGTGAAGAGAGGGAAAGAACAAGGTTATGATATTGTCTTATGTGATACCTCTGGACGTCTGCACACTAATTACAGCTTGATGGAAGAGTTGATTGCATGTAAGAAAGCTGCAGGCAAAGTCATGCCTGGTGCTCCTAATGAGATCCTACAAGTTCTGGATGGGACCACTGGTTTAAATATGCTTCCACAAGCAAGAGAATTCAATGAAATTGTTGGGATAACTGGTTTGATTTTGACAAAGCTTGATGGTTCTGCAAGAGGTGGCTGTGTGGTTAGTGTGGTAAATGAGCTTGGCATCCCTGTAAAGTTTGTGGGAGTTGGTGAAAGTGTAGAAGACCTACAACCCTTTGATGCAGAGGCTTTTGTGAATGCCATATTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N

Protein Analysis

392

Amino Acids

42.43

Weight (kDa)

8.14

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54_N	PF02881	120 - 169	1.7e-09	SRP54-type protein, helical bundle domain
SRP54	PF00448	190 - 391	8.1e-72	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45770
fragaria_vesca	FvH4_7g13420 FvH4_7g13420
malus_domestica	MD01G1049200.v1.1 MD07G1126100.v1.1
prunus_persica	Prupe.2G157700_v2.0.a1 Prupe.2G158000_v2.0.a1
pyrus_communis	pycom07g12060
rosa_chinensis	RchiOBHm_Chr1g0352781 RchiOBHm_Chr1g0352811 RchiOBHm_Chr1g0352821
rosa_laevigata	RLG00000028314
rosa_multiflora	Rmu_co8452643.1_g000001 Rmu_sc0006445.1_g000007 Rmu_sc0006445.1_g000013
rosa_roxburghii	Rroxscaffold_4G00302380
rosa_rugosa	Rorug01G0231700
rosa_samantha	Rh1AG244900 Rh1BG215600 Rh1CG228700 Rh1DG241600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	853
AccB1I	GGYRCC	1 cut(s)	6
AccII	CGCG	2 cut(s)	188, 306
AciI	CCGC	5 cut(s)	135, 140, 160, 186, 304
AclWI	GGATC	1 cut(s)	931
AcsI	RAATTY	1 cut(s)	992
AcuI	CTGAAG	1 cut(s)	533
AcyI	GRCGYC	3 cut(s)	7, 241, 850
AfiI	CCNNNNNNNGG	3 cut(s)	208, 219, 250
AgsI	TTSAA	4 cut(s)	229, 383, 502, 997
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	919
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
Alw21I	GWGCWC	2 cut(s)	333, 928
Alw26I	GTCTC	3 cut(s)	61, 239, 621
AlwI	GGATC	1 cut(s)	931
AoxI	GGCC	4 cut(s)	210, 258, 410, 765
ApaI	GGGCCC	1 cut(s)	414
ApeKI	GCWGC	5 cut(s)	671, 692, 695, 773, 902
ApoI	RAATTY	1 cut(s)	992
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	4 cut(s)	210, 410, 411, 957
AsuC2I	CCSGG	4 cut(s)	196, 209, 220, 289
AsuHPI	GGTGA	3 cut(s)	412, 713, 1127
AvaII	GGWCC	1 cut(s)	957
BaeGI	GKGCMC	1 cut(s)	414
BanI	GGYRCC	1 cut(s)	6
BanII	GRGCYC	2 cut(s)	333, 414
BbsI	GAAGAC	3 cut(s)	183, 614, 1134
Bbv12I	GWGCWC	2 cut(s)	333, 928
BbvI	GCAGC	5 cut(s)	679, 682, 683, 785, 889
BccI	CCATC	4 cut(s)	661, 868, 947, 1034
BceAI	ACGGC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	921
BciVI	GTATCC	2 cut(s)	551, 673
BcnI	CCSGG	4 cut(s)	196, 209, 220, 289
BcoDI	GTCTC	3 cut(s)	61, 239, 621
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	2 cut(s)	528, 903
BfoI	RGCGCY	1 cut(s)	10
BfuI	GTATCC	2 cut(s)	551, 673
BisI	GCNGC	5 cut(s)	672, 693, 696, 774, 903
BlsI	GCNGC	5 cut(s)	673, 694, 697, 775, 904
Bme1390I	CCNGG	5 cut(s)	196, 209, 220, 289, 921
Bme18I	GGWCC	1 cut(s)	957
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	4 cut(s)	210, 410, 411, 957
BmiI	GGNNCC	6 cut(s)	8, 200, 217, 347, 412, 958
BmrFI	CCNGG	5 cut(s)	196, 209, 220, 289, 921
BmrI	ACTGGG	1 cut(s)	741
BmsI	GCATC	2 cut(s)	1098, 1135
BmuI	ACTGGG	1 cut(s)	741
BoxI	GACNNNNGTC	1 cut(s)	187
BpiI	GAAGAC	3 cut(s)	183, 614, 1134
BpmI	CTGGAG	1 cut(s)	731
BpuEI	CTTGAG	1 cut(s)	455
BpuMI	CCSGG	4 cut(s)	196, 209, 220, 289
BsaHI	GRCGYC	3 cut(s)	7, 241, 850
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 219, 250
Bse118I	RCCGGY	2 cut(s)	568, 698
Bse1I	ACTGG	4 cut(s)	347, 736, 967, 1021
BseBI	CCWGG	1 cut(s)	921
BseGI	GGATG	2 cut(s)	958, 1089
BseLI	CCNNNNNNNGG	3 cut(s)	208, 219, 250
BseMII	CTCAG	4 cut(s)	72, 534, 714, 803
BseNI	ACTGG	4 cut(s)	347, 736, 967, 1021
BseRI	GAGGAG	4 cut(s)	113, 155, 323, 326
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	5 cut(s)	679, 682, 683, 785, 889
BsgI	GTGCAG	1 cut(s)	839
Bsh1236I	CGCG	2 cut(s)	188, 306
Bsh1285I	CGRYCG	1 cut(s)	364
BshFI	GGCC	4 cut(s)	212, 260, 412, 767
BshNI	GGYRCC	1 cut(s)	6
BsiEI	CGRYCG	1 cut(s)	364
BsiHKAI	GWGCWC	2 cut(s)	333, 928
BsiSI	CCGG	7 cut(s)	195, 208, 213, 219, 288, 569, 699
BslFI	GGGAC	1 cut(s)	970
BslI	CCNNNNNNNGG	3 cut(s)	208, 219, 250
BsmAI	GTCTC	3 cut(s)	61, 239, 621
BsmBI	CGTCTC	2 cut(s)	239, 621
BsmFI	GGGAC	1 cut(s)	970
BsmI	GAATGC	1 cut(s)	1168
BsnI	GGCC	4 cut(s)	212, 260, 412, 767
Bsp120I	GGGCCC	1 cut(s)	410
Bsp1286I	GDGCHC	3 cut(s)	333, 414, 928
Bsp143I	GATC	3 cut(s)	361, 417, 936
BspACI	CCGC	5 cut(s)	135, 140, 160, 186, 304
BspANI	GGCC	4 cut(s)	212, 260, 412, 767
BspCNI	CTCAG	4 cut(s)	71, 535, 715, 802
BspFNI	CGCG	2 cut(s)	188, 306
BspLI	GGNNCC	6 cut(s)	8, 200, 217, 347, 412, 958
BspMAI	CTGCAG	1 cut(s)	907
BspPI	GGATC	1 cut(s)	931
BspQI	GCTCTTC	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	6
BsrFI	RCCGGY	2 cut(s)	568, 698
BsrI	ACTGG	4 cut(s)	347, 736, 967, 1021
BssAI	RCCGGY	2 cut(s)	568, 698
BssMI	GATC	3 cut(s)	361, 417, 936
BssNI	GRCGYC	3 cut(s)	7, 241, 850
Bst2UI	CCWGG	1 cut(s)	921
Bst4CI	ACNGT	3 cut(s)	17, 233, 781
Bst6I	CTCTTC	4 cut(s)	287, 378, 794, 873
BstACI	GRCGYC	3 cut(s)	7, 241, 850
BstC8I	GCNNGC	2 cut(s)	630, 907
BstDEI	CTNAG	4 cut(s)	58, 543, 723, 789
BstEII	GGTNACC	1 cut(s)	701
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	958, 1089
BstFNI	CGCG	2 cut(s)	188, 306
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	3 cut(s)	364, 420, 939
BstMAI	GTCTC	3 cut(s)	61, 239, 621
BstMBI	GATC	3 cut(s)	361, 417, 936
BstMCI	CGRYCG	1 cut(s)	364
BstMWI	GCNNNNNNNGC	1 cut(s)	773
BstNI	CCWGG	1 cut(s)	921
BstNSI	RCATGY	1 cut(s)	894
BstPAI	GACNNNNGTC	1 cut(s)	187
BstPI	GGTNACC	1 cut(s)	701
BstSCI	CCNGG	5 cut(s)	194, 207, 218, 287, 919
BstSFI	CTRYAG	2 cut(s)	528, 903
BstSLI	GKGCMC	1 cut(s)	414
BstUI	CGCG	2 cut(s)	188, 306
BstV1I	GCAGC	5 cut(s)	679, 682, 683, 785, 889
BstV2I	GAAGAC	3 cut(s)	183, 614, 1134
BstX2I	RGATCY	1 cut(s)	936
BstYI	RGATCY	1 cut(s)	936
BsuI	GTATCC	2 cut(s)	551, 673
BsuRI	GGCC	4 cut(s)	212, 260, 412, 767
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	958, 1089
BtsIMutI	CAGTG	2 cut(s)	22, 960
Cac8I	GCNNGC	2 cut(s)	630, 907
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	2 cut(s)	568, 698
Cfr13I	GGNCC	4 cut(s)	210, 410, 411, 957
CseI	GACGC	2 cut(s)	177, 249
CviAII	CATG	2 cut(s)	891, 916
DdeI	CTNAG	4 cut(s)	58, 543, 723, 789
DinI	GGCGCC	1 cut(s)	8
DpnI	GATC	3 cut(s)	363, 419, 938
DpnII	GATC	3 cut(s)	361, 417, 936
DraI	TTTAAA	1 cut(s)	969
Eam1104I	CTCTTC	4 cut(s)	287, 378, 794, 873
EarI	CTCTTC	4 cut(s)	287, 378, 794, 873
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	2 cut(s)	333, 414
Eco47I	GGWCC	1 cut(s)	957
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	533
Eco91I	GGTNACC	1 cut(s)	701
EcoICRI	GAGCTC	1 cut(s)	331
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO65I	GGTNACC	1 cut(s)	701
EcoRI	GAATTC	1 cut(s)	992
EcoRII	CCWGG	1 cut(s)	919
EcoT38I	GRGCYC	2 cut(s)	333, 414
EgeI	GGCGCC	1 cut(s)	8
EheI	GGCGCC	1 cut(s)	8
Esp3I	CGTCTC	2 cut(s)	239, 621
FaeI	CATG	2 cut(s)	894, 919
FaqI	GGGAC	1 cut(s)	970
FatI	CATG	2 cut(s)	890, 915
FauI	CCCGC	3 cut(s)	142, 193, 311
Fnu4HI	GCNGC	5 cut(s)	672, 693, 696, 774, 903
FokI	GGATG	2 cut(s)	965, 1076
FriOI	GRGCYC	2 cut(s)	333, 414
Fsp4HI	GCNGC	5 cut(s)	672, 693, 696, 774, 903
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	5 cut(s)	672, 693, 696, 774, 903
GsuI	CTGGAG	1 cut(s)	731
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	4 cut(s)	212, 260, 412, 767
HapII	CCGG	7 cut(s)	195, 208, 213, 219, 288, 569, 699
HgaI	GACGC	2 cut(s)	177, 249
HhaI	GCGC	1 cut(s)	9
Hin1I	GRCGYC	3 cut(s)	7, 241, 850
Hin1II	CATG	2 cut(s)	894, 919
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	525
HindII	GTYRAC	1 cut(s)	525
HindIII	AAGCTT	1 cut(s)	1034
HinfI	GANTC	1 cut(s)	366
HpaII	CCGG	7 cut(s)	195, 208, 213, 219, 288, 569, 699
HphI	GGTGA	3 cut(s)	412, 713, 1127
Hpy166II	GTNNAC	2 cut(s)	22, 525
Hpy188I	TCNGA	3 cut(s)	239, 403, 623
Hpy188III	TCNNGA	3 cut(s)	477, 846, 950
Hpy8I	GTNNAC	2 cut(s)	22, 525
Hpy99I	CGWCG	3 cut(s)	272, 329, 377
HpyAV	CCTTC	5 cut(s)	108, 250, 527, 644, 757
HpyCH4III	ACNGT	3 cut(s)	17, 233, 781
HpyCH4IV	ACGT	4 cut(s)	270, 614, 683, 850
HpyCH4V	TGCA	5 cut(s)	856, 890, 905, 1049, 1148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	773
HpyF3I	CTNAG	4 cut(s)	58, 543, 723, 789
HpySE526I	ACGT	4 cut(s)	270, 614, 683, 850
Hsp92I	GRCGYC	3 cut(s)	7, 241, 850
Hsp92II	CATG	2 cut(s)	894, 919
HspAI	GCGC	1 cut(s)	7
KasI	GGCGCC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	361, 417, 936
LguI	GCTCTTC	1 cut(s)	287
LmnI	GCTCC	2 cut(s)	336, 931
Lsp1109I	GCAGC	5 cut(s)	679, 682, 683, 785, 889
LweI	GCATC	2 cut(s)	1098, 1135
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	4 cut(s)	270, 614, 683, 850
MaeIII	GTNAC	1 cut(s)	701
MalI	GATC	3 cut(s)	363, 419, 938
MboI	GATC	3 cut(s)	361, 417, 936
MflI	RGATCY	1 cut(s)	936
MhlI	GDGCHC	3 cut(s)	333, 414, 928
MluCI	AATT	3 cut(s)	862, 992, 1002
Mly113I	GGCGCC	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	375
MseI	TTAA	4 cut(s)	426, 594, 641, 968
MspA1I	CMGCKG	2 cut(s)	62, 709
MspI	CCGG	7 cut(s)	195, 208, 213, 219, 288, 569, 699
MspR9I	CCNGG	5 cut(s)	196, 209, 220, 289, 921
Mva1269I	GAATGC	1 cut(s)	1168
MvaI	CCWGG	1 cut(s)	921
MvnI	CGCG	2 cut(s)	188, 306
MwoI	GCNNNNNNNGC	1 cut(s)	773
NarI	GGCGCC	1 cut(s)	7
NciI	CCSGG	4 cut(s)	196, 209, 220, 289
NdeII	GATC	3 cut(s)	361, 417, 936
NlaIII	CATG	2 cut(s)	894, 919
NlaIV	GGNNCC	6 cut(s)	8, 200, 217, 347, 412, 958
NmuCI	GTSAC	1 cut(s)	701
NspI	RCATGY	1 cut(s)	894
PciSI	GCTCTTC	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	2 cut(s)	321, 357
PctI	GAATGC	1 cut(s)	1168
PflFI	GACNNNGTC	1 cut(s)	613
PkrI	GCNGC	5 cut(s)	673, 694, 697, 775, 904
Ple19I	CGATCG	1 cut(s)	364
PleI	GAGTC	1 cut(s)	374
PluTI	GGCGCC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	374
PshAI	GACNNNNGTC	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	919
PspEI	GGTNACC	1 cut(s)	701
PspGI	CCWGG	1 cut(s)	919
PspN4I	GGNNCC	6 cut(s)	8, 200, 217, 347, 412, 958
PspOMI	GGGCCC	1 cut(s)	410
PspPI	GGNCC	4 cut(s)	210, 410, 411, 957
PstI	CTGCAG	1 cut(s)	907
PsuI	RGATCY	1 cut(s)	936
PsyI	GACNNNGTC	1 cut(s)	613
PvuI	CGATCG	1 cut(s)	364
PvuII	CAGCTG	2 cut(s)	62, 709
SacI	GAGCTC	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	287
SaqAI	TTAA	4 cut(s)	426, 594, 641, 968
SatI	GCNGC	5 cut(s)	672, 693, 696, 774, 903
Sau3AI	GATC	3 cut(s)	361, 417, 936
Sau96I	GGNCC	4 cut(s)	210, 410, 411, 957
SchI	GAGTC	1 cut(s)	375
ScrFI	CCNGG	5 cut(s)	196, 209, 220, 289, 921
SduI	GDGCHC	3 cut(s)	333, 414, 928
SfaNI	GCATC	2 cut(s)	1098, 1135
SfcI	CTRYAG	2 cut(s)	528, 903
SfoI	GGCGCC	1 cut(s)	8
SinI	GGWCC	1 cut(s)	957
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	3 cut(s)	862, 992, 1002
SsiI	CCGC	5 cut(s)	135, 140, 160, 186, 304
SspDI	GGCGCC	1 cut(s)	6
SspMI	CTAG	1 cut(s)	170
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	5 cut(s)	194, 207, 218, 287, 919
TaaI	ACNGT	3 cut(s)	17, 233, 781
TaiI	ACGT	4 cut(s)	273, 617, 686, 853
TaqI	TCGA	5 cut(s)	29, 324, 364, 372, 688
TasI	AATT	3 cut(s)	862, 992, 1002
Tru1I	TTAA	4 cut(s)	426, 594, 641, 968
Tru9I	TTAA	4 cut(s)	426, 594, 641, 968
TscAI	CASTG	2 cut(s)	22, 967
TseFI	GTSAC	1 cut(s)	701
TseI	GCWGC	5 cut(s)	671, 692, 695, 773, 902
Tsp45I	GTSAC	1 cut(s)	701
TspDTI	ATGAA	3 cut(s)	663, 1014, 1164
TspRI	CASTG	2 cut(s)	22, 967
Tth111I	GACNNNGTC	1 cut(s)	613
VpaK11BI	GGWCC	1 cut(s)	957
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	992
XceI	RCATGY	1 cut(s)	894
XcmI	CCANNNNNNNNNTGG	2 cut(s)	268, 430
XspI	CTAG	1 cut(s)	170
ZraI	GACGTC	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.