Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005095

Physical Location & Seq

Genomic Coordinates Reverse (-)

48119646 .. 48120370

Gene Structure 725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGATCAGAGTGGGCAACCTAGGCAGCTCTGAGGCCGACGCCGTGAACCAAAACTTAATCAAGGAGACGAATCGGATCCTAGCCGAGATCCGATCCGACAGTGACCCTAACTACCCGGATGAGTTCATCAACGGCACCCAGATCAGTAACCCGAACGTGACGTACACGCTCGGACCCAAGATCGGAAATTGGGACATGGAGAGAAGGCGGTGGCTTCAGTTAAACCAGGAGTTTCCGAGCTTGTCTTGGATTGCTTTGAATACTGGGAGTTTTCTATTTAGGAATTGCCAGTGGTCTTTGGATTTGCTTGATGCTTGGGCTCCGATGGGTCCCAAGGGGCCGATAAGAGAGGAGGCCGGGAAGGTTTTGACTGCCAATTTGAAGGGGAGGCCGGCGTTTAAGGCGAATGATCAGTCTGCATTGATATACTTGTTGGTGTCACAGAAGGATCTGTGGATGGAGAAGGTTTTTGTGGAGAATTCATATTACTTGCATAGATATTGGGCTGGATTGGTGGATCGGTATGAGGAGATGATAGAGAAATATCATCCGGGTTTGGGGGATGAGAGGTGGCCATTTGTGACCCATTTTGTGTGTTGCAAGCCTTGTGGGAGTTATGGGGATTATCCAGTGGAGAGGTGCTTGAGCAGCATGGAGATGGCTTTCAATTTTGCGGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0033843 GO:0034637 GO:0034645 GO:0035252 GO:0040007 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

227

Amino Acids

26.12

Weight (kDa)

5.18

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_34	PF05637	80 - 205	1.1e-24	galactosyl transferase GMA12/MNN10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74380 AT5G07720
fragaria_vesca	FvH4_5g14540 FvH4_5g14540
malus_domestica	MD06G1197600.v1.1 MD14G1205000.v1.1
prunus_persica	Prupe.5G198300_v2.0.a1
pyrus_communis	pycom14g16940
rosa_chinensis	RchiOBHm_Chr1g0355441 RchiOBHm_Chr6g0275691 RchiOBHm_Chr7g0182111 RchiOBHm_Chr7g0199921
rosa_laevigata	RLG00000005150 RLG00000007126 RLG00000018754 RLG00000027626 RLG00000033700
rosa_multiflora	Rmu_co8179518.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271500
rosa_rugosa	Rorug06G0445700
rosa_samantha	Rh1BG320500 Rh1CG334500 Rh1DG351200 Rh6CG214000 Rh6DG203300 Rh7AG048400 Rh7BG048200 Rh7DG047600
rosa_wichuraiana	Rw0G021050 Rw7G003950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	2 cut(s)	208, 674
AclWI	GGATC	6 cut(s)	70, 82, 83, 87, 456, 525
AcoI	YGGCCR	1 cut(s)	572
AcsI	RAATTY	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	182, 557
AgsI	TTSAA	3 cut(s)	259, 382, 667
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	2 cut(s)	27, 240
AluI	AGCT	2 cut(s)	27, 240
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	6 cut(s)	70, 82, 83, 87, 456, 525
AoxI	GGCC	5 cut(s)	33, 338, 354, 389, 572
ApeKI	GCWGC	2 cut(s)	24, 648
ApoI	RAATTY	1 cut(s)	478
ArsI	GACNNNNNNTTYG	4 cut(s)	361, 393, 398, 430
AspA2I	CCTAGG	1 cut(s)	19
AspS9I	GGNCC	3 cut(s)	173, 329, 338
AsuC2I	CCSGG	3 cut(s)	116, 358, 552
AvaII	GGWCC	2 cut(s)	173, 329
AvrII	CCTAGG	1 cut(s)	19
BalI	TGGCCA	1 cut(s)	574
BamHI	GGATCC	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	36, 660
BccI	CCATC	3 cut(s)	319, 451, 652
BceAI	ACGGC	2 cut(s)	26, 148
BciT130I	CCWGG	1 cut(s)	227
BclI	TGATCA	2 cut(s)	3, 409
BcnI	CCSGG	3 cut(s)	116, 358, 552
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	3 cut(s)	20, 80, 682
BisI	GCNGC	2 cut(s)	25, 649
BlnI	CCTAGG	1 cut(s)	19
BlsI	GCNGC	2 cut(s)	26, 650
Bme1390I	CCNGG	4 cut(s)	116, 227, 358, 552
Bme18I	GGWCC	2 cut(s)	173, 329
BmgT120I	GGNCC	3 cut(s)	173, 329, 338
BmiI	GGNNCC	7 cut(s)	77, 136, 175, 321, 330, 331, 339
BmrFI	CCNGG	4 cut(s)	116, 227, 358, 552
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	301
BmuI	ACTGGG	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	664
BpuMI	CCSGG	3 cut(s)	116, 358, 552
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	19, 333
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 557
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	3 cut(s)	268, 289, 629
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	2 cut(s)	19, 333
BseGI	GGATG	4 cut(s)	124, 462, 547, 568
BseLI	CCNNNNNNNGG	2 cut(s)	182, 557
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	3 cut(s)	268, 289, 629
BseRI	GAGGAG	2 cut(s)	365, 542
BseXI	GCAGC	2 cut(s)	36, 660
BshFI	GGCC	5 cut(s)	35, 340, 356, 391, 574
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	4 cut(s)	116, 357, 392, 551
BslFI	GGGAC	2 cut(s)	206, 315
BslI	CCNNNNNNNGG	2 cut(s)	182, 557
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	206, 315
BsnI	GGCC	5 cut(s)	35, 340, 356, 391, 574
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	9 cut(s)	3, 75, 87, 92, 141, 180, 409, 448, 517
BspACI	CCGC	2 cut(s)	208, 674
BspANI	GGCC	5 cut(s)	35, 340, 356, 391, 574
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	7 cut(s)	77, 136, 175, 321, 330, 331, 339
BspPI	GGATC	6 cut(s)	70, 82, 83, 87, 456, 525
BspT107I	GGYRCC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	3 cut(s)	268, 289, 629
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	2 cut(s)	19, 333
BssMI	GATC	9 cut(s)	3, 75, 87, 92, 141, 180, 409, 448, 517
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	19, 333
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	101
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	393, 602
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	4 cut(s)	124, 462, 547, 568
BstKTI	GATC	9 cut(s)	6, 78, 90, 95, 144, 183, 412, 451, 520
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	9 cut(s)	3, 75, 87, 92, 141, 180, 409, 448, 517
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 401, 648
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	4 cut(s)	114, 225, 356, 550
BstV1I	GCAGC	2 cut(s)	36, 660
BstX2I	RGATCY	3 cut(s)	75, 87, 448
BstYI	RGATCY	3 cut(s)	75, 87, 448
BsuRI	GGCC	5 cut(s)	35, 340, 356, 391, 574
BtsCI	GGATG	4 cut(s)	124, 462, 547, 568
BtsIMutI	CAGTG	3 cut(s)	106, 296, 636
Cac8I	GCNNGC	2 cut(s)	393, 602
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	3 cut(s)	173, 329, 338
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	163
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviAII	CATG	2 cut(s)	196, 652
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	9 cut(s)	5, 77, 89, 94, 143, 182, 411, 450, 519
DpnII	GATC	9 cut(s)	3, 75, 87, 92, 141, 180, 409, 448, 517
EaeI	YGGCCR	1 cut(s)	572
Eco130I	CCWWGG	2 cut(s)	19, 333
Eco24I	GRGCYC	1 cut(s)	322
Eco47I	GGWCC	2 cut(s)	173, 329
Eco57I	CTGAAG	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRI	GAATTC	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	2 cut(s)	19, 333
EcoT38I	GRGCYC	1 cut(s)	322
ErhI	CCWWGG	2 cut(s)	19, 333
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	2 cut(s)	199, 655
FaiI	YATR	7 cut(s)	197, 427, 484, 495, 525, 618, 653
FaqI	GGGAC	2 cut(s)	206, 315
FatI	CATG	2 cut(s)	195, 651
FbaI	TGATCA	2 cut(s)	3, 409
Fnu4HI	GCNGC	2 cut(s)	25, 649
FokI	GGATG	4 cut(s)	131, 469, 534, 575
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	2 cut(s)	25, 649
FspBI	CTAG	3 cut(s)	20, 80, 682
GluI	GCNGC	2 cut(s)	25, 649
HaeIII	GGCC	5 cut(s)	35, 340, 356, 391, 574
HapII	CCGG	4 cut(s)	116, 357, 392, 551
HgaI	GACGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	2 cut(s)	199, 655
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	4 cut(s)	116, 357, 392, 551
Hpy166II	GTNNAC	2 cut(s)	46, 165
Hpy188I	TCNGA	9 cut(s)	8, 31, 75, 92, 97, 173, 185, 237, 324
Hpy8I	GTNNAC	2 cut(s)	46, 165
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	5 cut(s)	198, 355, 376, 439, 457
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	2 cut(s)	156, 161
HpyCH4V	TGCA	3 cut(s)	419, 493, 600
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 401, 648
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	2 cut(s)	156, 161
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	199, 655
KflI	GGGWCCC	1 cut(s)	329
KroI	GCCGGC	1 cut(s)	391
KroNI	GCCGGC	1 cut(s)	393
Ksp22I	TGATCA	2 cut(s)	3, 409
Kzo9I	GATC	9 cut(s)	3, 75, 87, 92, 141, 180, 409, 448, 517
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	2 cut(s)	36, 660
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	3 cut(s)	20, 80, 682
MaeII	ACGT	2 cut(s)	156, 161
MaeIII	GTNAC	5 cut(s)	101, 146, 157, 438, 580
MalI	GATC	9 cut(s)	5, 77, 89, 94, 143, 182, 411, 450, 519
MboI	GATC	9 cut(s)	3, 75, 87, 92, 141, 180, 409, 448, 517
MflI	RGATCY	3 cut(s)	75, 87, 448
MhlI	GDGCHC	1 cut(s)	322
MlsI	TGGCCA	1 cut(s)	574
MluCI	AATT	5 cut(s)	187, 283, 376, 478, 667
MluNI	TGGCCA	1 cut(s)	574
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	7 cut(s)	25, 343, 346, 381, 520, 561, 630
Mox20I	TGGCCA	1 cut(s)	574
MroNI	GCCGGC	1 cut(s)	391
MscI	TGGCCA	1 cut(s)	574
MseI	TTAA	3 cut(s)	56, 221, 399
MslI	CAYNNNNRTG	1 cut(s)	656
Msp20I	TGGCCA	1 cut(s)	574
MspI	CCGG	4 cut(s)	116, 357, 392, 551
MspR9I	CCNGG	4 cut(s)	116, 227, 358, 552
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	3 cut(s)	21, 401, 648
NaeI	GCCGGC	1 cut(s)	393
NciI	CCSGG	3 cut(s)	116, 358, 552
NdeII	GATC	9 cut(s)	3, 75, 87, 92, 141, 180, 409, 448, 517
NgoMIV	GCCGGC	1 cut(s)	391
NlaIII	CATG	2 cut(s)	199, 655
NlaIV	GGNNCC	7 cut(s)	77, 136, 175, 321, 330, 331, 339
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	4 cut(s)	101, 157, 438, 580
PdiI	GCCGGC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	26, 650
PpuMI	RGGWCCY	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	7 cut(s)	77, 136, 175, 321, 330, 331, 339
PspPI	GGNCC	3 cut(s)	173, 329, 338
PspPPI	RGGWCCY	1 cut(s)	329
PsrI	GAACNNNNNNTAC	2 cut(s)	146, 178
PsuI	RGATCY	3 cut(s)	75, 87, 448
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	656
SaqAI	TTAA	3 cut(s)	56, 221, 399
SatI	GCNGC	2 cut(s)	25, 649
Sau3AI	GATC	9 cut(s)	3, 75, 87, 92, 141, 180, 409, 448, 517
Sau96I	GGNCC	3 cut(s)	173, 329, 338
ScrFI	CCNGG	4 cut(s)	116, 227, 358, 552
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	9 cut(s)	21, 29, 159, 164, 242, 366, 468, 572, 641
SfaNI	GCATC	1 cut(s)	301
SinI	GGWCC	2 cut(s)	173, 329
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	1 cut(s)	643
SmoI	CTYRAG	1 cut(s)	643
Sse9I	AATT	5 cut(s)	187, 283, 376, 478, 667
SsiI	CCGC	2 cut(s)	208, 674
SspMI	CTAG	3 cut(s)	20, 80, 682
StyD4I	CCNGG	4 cut(s)	114, 225, 356, 550
StyI	CCWWGG	2 cut(s)	19, 333
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	2 cut(s)	159, 164
TasI	AATT	5 cut(s)	187, 283, 376, 478, 667
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	3 cut(s)	56, 221, 399
Tru9I	TTAA	3 cut(s)	56, 221, 399
TscAI	CASTG	3 cut(s)	106, 296, 636
TseFI	GTSAC	4 cut(s)	101, 157, 438, 580
TseI	GCWGC	2 cut(s)	24, 648
Tsp45I	GTSAC	4 cut(s)	101, 157, 438, 580
TspDTI	ATGAA	2 cut(s)	115, 471
TspRI	CASTG	3 cut(s)	106, 296, 636
VpaK11BI	GGWCC	2 cut(s)	173, 329
XapI	RAATTY	1 cut(s)	478
XmaJI	CCTAGG	1 cut(s)	19
XspI	CTAG	3 cut(s)	20, 80, 682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.