RchiOBHm_Chr1g0359211

Chitinase domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012160
Physical Location & Seq
Reverse (-)
51237552 .. 51241439
3888 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1299 bp
ATGGCGAAGAAAAAAGACCGCCGAGTAGTGGCGCCGAGTTCCGAACGCCCCAAAGACCGAGCCGAACCGTCGCACCAACTCGCCCACTCAGCCTCATCCTCCTCAAATCGGAAGCTCGTAATCACCTTCGTCCTCTTCTTCGTCGTATCTTCAGCAATCTCGGTACTCGTGTACCGCCTCAATTATGCTCCGATCACAGACCGGATGGAGTCCTACGTGTTCCGGCGAGGCCTCGTTAAGCCCGACGTGACCTACCAAGAGATCCTCACTGAAAATGCAGTTGTTTCGGAAAATACGACTGGCAGGCACTATACTTATCCTGTATTAGCTTACATTACTCCATGGAATTCTAAGGGCTATGATTTGGCAAAAAGGTTTAACTCCAAATTTACACATATATCTCCAGTCTGGTATGATCTGAAGAGTCAAGGGACCAGCTTAATTCTGGAAGGCAGACATAATGCTGATATTGGGTGGATCTCAGACCTTAGAATAGCAGGAGACGCTTGGGTATTGCCTAGAATTGTTCTGGAAGCTTTTCCAGCAGAGCTGCTTACAAAGAAAAAGCAGAGGAATAAGGCTATTGATCTTATAGTAAGCGAGTGCAAGGAAATGGGCTATGATGGAATTGTGCTGGAATCTTGGTCAAGGTGGGCAGCTTACCGTGTTTTGCATGATCCAAAGATGCGGAATTTGGCATTAAAGTTTATAAAAGATCTTGGAGATGCACTGCATGCTGTGACTTCAGAGAGGAACAATAAGCACCACTTGCAGTTGGTGTATGTTATAGGCCCACCACATTCAGAGAAGCTCCAAGTACATGATTTTGGACCTAAAGATCTTCATAGCTTGAGTGATGCTGTGGATGGATTCTCACTTATGACATATGACTTCTCAGGGCCTCATAATCCAGGTCCCAATGCACCTTTGAAGTGGATCGATTCCACCCTCCAGCTGCTTCTTGGTACCAATAAAAACAGTGCTCTGGCCAGCAAGATACTTCTCGGCATCAATTTCTATGGAAATGATTACATCCTCTCAGGAGGTTCTGGTGGTGGTGCTATCACCGGAAGAGATTACATCTCCTTGTTGGAGAAGCACAAGCCTGCATTTCGATGGGAAAAGAACAGCGCAGAACATTTGTTCTTCTACACTGATAATGATCATAACAATCATGCTGTGTTCTACCCATCGTTACTGTCAATTTCCATGCGGCTAGAGGAAGCTCGTAAATGGGGTTGTGGCATCTCAATATGGGAAATTGGGCAAGGTCTGGATTACTTTTACGATCTTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

432

Amino Acids

48.89

Weight (kDa)

8.85

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 184 - 423 2.4e-17 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01040 AT4G01040
fragaria_vesca FvH4_7g16200
malus_domestica MD01G1078600.v1.1 MD07G1147600.v1.1
prunus_persica Prupe.2G185600_v2.0.a1 Prupe.2G185600_v2.0.a1
pyrus_communis pycom01g10710
rosa_chinensis RchiOBHm_Chr1g0359211
rosa_laevigata RLG00000027893
rosa_multiflora Rmu_co8274979.1_g000001 Rmu_ssc0000135.1_g000019
rosa_roxburghii Rroxscaffold_4G00297250
rosa_rugosa Rorug01G0268400
rosa_samantha Rh1AG282300 Rh1BG248700 Rh1CG266500 Rh1DG277700
rosa_wichuraiana Rw1G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 710
Acc65I GGTACC 1 cut(s) 965
AccB1I GGYRCC 2 cut(s) 31, 965
AciI CCGC 4 cut(s) 19, 175, 688, 1213
AclWI GGATC 4 cut(s) 256, 485, 671, 944
AcoI YGGCCR 1 cut(s) 987
AcsI RAATTY 3 cut(s) 346, 386, 691
AcuI CTGAAG 3 cut(s) 135, 440, 729
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 4 cut(s) 165, 173, 819, 967
AfiI CCNNNNNNNGG 2 cut(s) 28, 108
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 1 cut(s) 931
AjiI CACGTC 1 cut(s) 247
AjnI CCWGG 1 cut(s) 910
Alw21I GWGCWC 1 cut(s) 985
Alw26I GTCTC 1 cut(s) 495
AlwI GGATC 4 cut(s) 256, 485, 671, 944
AoxI GGCC 4 cut(s) 229, 790, 899, 987
ApeKI GCWGC 3 cut(s) 550, 656, 955
ApoI RAATTY 3 cut(s) 346, 386, 691
Asp700I GAANNNNTTC 1 cut(s) 537
Asp718I GGTACC 1 cut(s) 965
AspLEI GCGC 2 cut(s) 34, 1133
AspS9I GGNCC 5 cut(s) 432, 791, 830, 899, 914
AsuHPI GGTGA 2 cut(s) 115, 1057
AvaII GGWCC 3 cut(s) 432, 830, 914
BaeI ACNNNNGTAYC 4 cut(s) 155, 155, 188, 188
BalI TGGCCA 1 cut(s) 989
BanI GGYRCC 2 cut(s) 31, 965
BauI CACGAG 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 985
BbvI GCAGC 3 cut(s) 537, 668, 942
BccI CCATC 5 cut(s) 199, 617, 860, 1110, 1198
BcgI CGANNNNNNTGC 2 cut(s) 267, 301
BciT130I CCWGG 1 cut(s) 912
BclI TGATCA 1 cut(s) 1162
BcoDI GTCTC 1 cut(s) 495
BfaI CTAG 2 cut(s) 519, 1217
BfoI RGCGCY 1 cut(s) 35
BglII AGATCT 2 cut(s) 715, 838
BisI GCNGC 4 cut(s) 551, 657, 956, 1214
BlsI GCNGC 4 cut(s) 552, 658, 957, 1215
Bme1390I CCNGG 1 cut(s) 912
Bme18I GGWCC 3 cut(s) 432, 830, 914
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 5 cut(s) 432, 791, 830, 899, 914
BmiI GGNNCC 4 cut(s) 33, 433, 916, 967
BmrFI CCNGG 1 cut(s) 912
BmsI GCATC 5 cut(s) 675, 715, 847, 1017, 1254
BpmI CTGGAG 2 cut(s) 387, 935
BpuEI CTTGAG 1 cut(s) 871
Bsa29I ATCGAT 1 cut(s) 939
BsaAI YACGTR 1 cut(s) 217
BsaBI GATNNNNATC 1 cut(s) 1161
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 341
BsaWI WCCGGW 2 cut(s) 201, 1067
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 108
Bse1I ACTGG 2 cut(s) 304, 404
Bse8I GATNNNNATC 1 cut(s) 1161
BseBI CCWGG 1 cut(s) 912
BseCI ATCGAT 1 cut(s) 939
BseDI CCNNGG 1 cut(s) 341
BseGI GGATG 4 cut(s) 95, 210, 871, 1032
BseJI GATNNNNATC 1 cut(s) 1161
BseLI CCNNNNNNNGG 2 cut(s) 28, 108
BseMII CTCAG 4 cut(s) 102, 495, 909, 1053
BseNI ACTGG 2 cut(s) 304, 404
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 3 cut(s) 537, 668, 942
BshFI GGCC 4 cut(s) 231, 792, 901, 989
BshNI GGYRCC 2 cut(s) 31, 965
BshVI ATCGAT 1 cut(s) 939
BsiHKAI GWGCWC 1 cut(s) 985
BsiSI CCGG 3 cut(s) 202, 223, 1068
BslFI GGGAC 2 cut(s) 445, 900
BslI CCNNNNNNNGG 2 cut(s) 28, 108
BsmAI GTCTC 1 cut(s) 495
BsmBI CGTCTC 1 cut(s) 495
BsmFI GGGAC 2 cut(s) 445, 900
BsnI GGCC 4 cut(s) 231, 792, 901, 989
Bsp1286I GDGCHC 1 cut(s) 985
Bsp19I CCATGG 1 cut(s) 341
BspACI CCGC 4 cut(s) 19, 175, 688, 1213
BspANI GGCC 4 cut(s) 231, 792, 901, 989
BspCNI CTCAG 4 cut(s) 101, 494, 908, 1052
BspDI ATCGAT 1 cut(s) 939
BspLI GGNNCC 4 cut(s) 33, 433, 916, 967
BspPI GGATC 4 cut(s) 256, 485, 671, 944
BspT107I GGYRCC 2 cut(s) 31, 965
BsrI ACTGG 2 cut(s) 304, 404
BssECI CCNNGG 1 cut(s) 341
BssNI GRCGYC 1 cut(s) 32
BssSI CACGAG 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 912
Bst4CI ACNGT 4 cut(s) 69, 665, 980, 1200
Bst6I CTCTTC 3 cut(s) 140, 416, 1066
BstACI GRCGYC 1 cut(s) 32
BstAPI GCANNNNNTGC 2 cut(s) 734, 769
BstBAI YACGTR 1 cut(s) 217
BstC8I GCNNGC 4 cut(s) 305, 735, 991, 1107
BstDEI CTNAG 6 cut(s) 88, 351, 481, 488, 895, 1039
BstDSI CCRYGG 1 cut(s) 341
BstF5I GGATG 4 cut(s) 95, 210, 871, 1032
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 2 cut(s) 34, 1133
BstMAI GTCTC 1 cut(s) 495
BstMWI GCNNNNNNNGC 5 cut(s) 89, 503, 542, 734, 769
BstNI CCWGG 1 cut(s) 912
BstNSI RCATGY 1 cut(s) 737
BstSCI CCNGG 1 cut(s) 910
BstV1I GCAGC 3 cut(s) 537, 668, 942
BstX2I RGATCY 4 cut(s) 261, 477, 715, 838
BstYI RGATCY 4 cut(s) 261, 477, 715, 838
Bsu15I ATCGAT 1 cut(s) 939
BsuRI GGCC 4 cut(s) 231, 792, 901, 989
BsuTUI ATCGAT 1 cut(s) 939
BtgI CCRYGG 1 cut(s) 341
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 4 cut(s) 95, 210, 871, 1032
BtsI GCAGTG 1 cut(s) 728
BtsIMutI CAGTG 4 cut(s) 267, 728, 985, 1152
Cac8I GCNNGC 4 cut(s) 305, 735, 991, 1107
CfoI GCGC 2 cut(s) 34, 1133
Cfr13I GGNCC 5 cut(s) 432, 791, 830, 899, 914
ClaI ATCGAT 1 cut(s) 939
CseI GACGC 1 cut(s) 512
Csp6I GTAC 4 cut(s) 164, 172, 818, 966
CviAII CATG 6 cut(s) 342, 674, 734, 821, 1175, 1210
CviQI GTAC 4 cut(s) 164, 172, 818, 966
DdeI CTNAG 6 cut(s) 88, 351, 481, 488, 895, 1039
DinI GGCGCC 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 987
Eam1104I CTCTTC 3 cut(s) 140, 416, 1066
EarI CTCTTC 3 cut(s) 140, 416, 1066
Eco130I CCWWGG 1 cut(s) 341
Eco147I AGGCCT 1 cut(s) 231
Eco47I GGWCC 3 cut(s) 432, 830, 914
Eco57I CTGAAG 3 cut(s) 135, 440, 729
EcoO109I RGGNCCY 2 cut(s) 899, 914
EcoRI GAATTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 910
EcoT14I CCWWGG 1 cut(s) 341
EgeI GGCGCC 1 cut(s) 33
EheI GGCGCC 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 341
Esp3I CGTCTC 1 cut(s) 495
FaeI CATG 6 cut(s) 345, 677, 737, 824, 1178, 1213
FalI AAGNNNNNCTT 2 cut(s) 752, 784
FaqI GGGAC 2 cut(s) 445, 900
FatI CATG 6 cut(s) 341, 673, 733, 820, 1174, 1209
FauNDI CATATG 1 cut(s) 886
FbaI TGATCA 1 cut(s) 1162
Fnu4HI GCNGC 4 cut(s) 551, 657, 956, 1214
FokI GGATG 4 cut(s) 82, 217, 878, 1019
Fsp4HI GCNGC 4 cut(s) 551, 657, 956, 1214
FspBI CTAG 2 cut(s) 519, 1217
GlaI GCGC 2 cut(s) 33, 1132
GluI GCNGC 4 cut(s) 551, 657, 956, 1214
GsuI CTGGAG 2 cut(s) 387, 935
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 4 cut(s) 231, 792, 901, 989
HapII CCGG 3 cut(s) 202, 223, 1068
HgaI GACGC 1 cut(s) 512
HhaI GCGC 2 cut(s) 34, 1133
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 6 cut(s) 345, 677, 737, 824, 1178, 1213
Hin6I GCGC 2 cut(s) 32, 1131
HinP1I GCGC 2 cut(s) 32, 1131
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 5 cut(s) 209, 424, 638, 870, 941
HpaII CCGG 3 cut(s) 202, 223, 1068
HphI GGTGA 2 cut(s) 115, 1057
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 8 cut(s) 43, 111, 192, 289, 420, 484, 748, 805
Hpy188III TCNNGA 4 cut(s) 446, 530, 1041, 1274
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 3 cut(s) 73, 146, 248
HpyAV CCTTC 2 cut(s) 136, 443
HpyCH4III ACNGT 4 cut(s) 69, 665, 980, 1200
HpyCH4IV ACGT 2 cut(s) 216, 246
HpyCH4V TGCA 8 cut(s) 278, 606, 673, 728, 733, 772, 923, 1109
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 503, 542, 734, 769
HpyF3I CTNAG 6 cut(s) 88, 351, 481, 488, 895, 1039
HpySE526I ACGT 2 cut(s) 216, 246
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 6 cut(s) 345, 677, 737, 824, 1178, 1213
HspAI GCGC 2 cut(s) 32, 1131
KasI GGCGCC 1 cut(s) 31
KpnI GGTACC 1 cut(s) 969
Ksp22I TGATCA 1 cut(s) 1162
LmnI GCTCC 2 cut(s) 193, 816
Lsp1109I GCAGC 3 cut(s) 537, 668, 942
LweI GCATC 5 cut(s) 675, 715, 847, 1017, 1254
MaeI CTAG 2 cut(s) 519, 1217
MaeII ACGT 2 cut(s) 216, 246
MaeIII GTNAC 3 cut(s) 247, 739, 1194
MboII GAAGA 9 cut(s) 19, 127, 130, 141, 433, 833, 1083, 1138, 1283
MflI RGATCY 4 cut(s) 261, 477, 715, 838
MhlI GDGCHC 1 cut(s) 985
MlsI TGGCCA 1 cut(s) 989
MluNI TGGCCA 1 cut(s) 989
Mly113I GGCGCC 1 cut(s) 32
MlyI GAGTC 2 cut(s) 218, 433
MmeI TCCRAC 1 cut(s) 1071
Mox20I TGGCCA 1 cut(s) 989
MroXI GAANNNNTTC 1 cut(s) 537
MscI TGGCCA 1 cut(s) 989
MseI TTAA 4 cut(s) 237, 378, 440, 701
MslI CAYNNNNRTG 1 cut(s) 1114
Msp20I TGGCCA 1 cut(s) 989
MspA1I CMGCKG 1 cut(s) 955
MspI CCGG 3 cut(s) 202, 223, 1068
MspR9I CCNGG 1 cut(s) 912
MvaI CCWGG 1 cut(s) 912
MwoI GCNNNNNNNGC 5 cut(s) 89, 503, 542, 734, 769
NarI GGCGCC 1 cut(s) 32
NcoI CCATGG 1 cut(s) 341
NdeI CATATG 1 cut(s) 886
NlaIII CATG 6 cut(s) 345, 677, 737, 824, 1178, 1213
NlaIV GGNNCC 4 cut(s) 33, 433, 916, 967
NmeAIII GCCGAG 3 cut(s) 47, 60, 984
NmuCI GTSAC 2 cut(s) 247, 739
NspI RCATGY 1 cut(s) 737
PaeI GCATGC 1 cut(s) 737
PceI AGGCCT 1 cut(s) 231
PcsI WCGNNNNNNNCGW 2 cut(s) 240, 293
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 3 cut(s) 638, 870, 941
PkrI GCNGC 4 cut(s) 552, 658, 957, 1215
PleI GAGTC 2 cut(s) 217, 432
PluTI GGCGCC 1 cut(s) 35
PpsI GAGTC 2 cut(s) 217, 432
Ppu21I YACGTR 1 cut(s) 217
PpuMI RGGWCCY 1 cut(s) 914
PsiI TTATAA 1 cut(s) 710
Psp5II RGGWCCY 1 cut(s) 914
Psp6I CCWGG 1 cut(s) 910
PspGI CCWGG 1 cut(s) 910
PspN4I GGNNCC 4 cut(s) 33, 433, 916, 967
PspPI GGNCC 5 cut(s) 432, 791, 830, 899, 914
PspPPI RGGWCCY 1 cut(s) 914
PsuI RGATCY 4 cut(s) 261, 477, 715, 838
PvuII CAGCTG 1 cut(s) 955
RsaI GTAC 4 cut(s) 165, 173, 819, 967
RsaNI GTAC 4 cut(s) 164, 172, 818, 966
RseI CAYNNNNRTG 1 cut(s) 1114
SaqAI TTAA 4 cut(s) 237, 378, 440, 701
SatI GCNGC 4 cut(s) 551, 657, 956, 1214
Sau96I GGNCC 5 cut(s) 432, 791, 830, 899, 914
SchI GAGTC 2 cut(s) 218, 433
ScrFI CCNGG 1 cut(s) 912
SduI GDGCHC 1 cut(s) 985
SfaNI GCATC 5 cut(s) 675, 715, 847, 1017, 1254
SfoI GGCGCC 1 cut(s) 33
SinI GGWCC 3 cut(s) 432, 830, 914
SmiMI CAYNNNNRTG 1 cut(s) 1114
SmlI CTYRAG 1 cut(s) 850
SmoI CTYRAG 1 cut(s) 850
SphI GCATGC 1 cut(s) 737
SseBI AGGCCT 1 cut(s) 231
SsiI CCGC 4 cut(s) 19, 175, 688, 1213
SspDI GGCGCC 1 cut(s) 31
SspMI CTAG 2 cut(s) 519, 1217
StuI AGGCCT 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 910
StyI CCWWGG 1 cut(s) 341
TaaI ACNGT 4 cut(s) 69, 665, 980, 1200
TaiI ACGT 2 cut(s) 219, 249
TaqI TCGA 2 cut(s) 939, 1114
TaqII GACCGA 1 cut(s) 72
TatI WGTACW 1 cut(s) 817
TauI GCSGC 1 cut(s) 1216
TfiI GAWTC 3 cut(s) 638, 870, 941
Tru1I TTAA 4 cut(s) 237, 378, 440, 701
Tru9I TTAA 4 cut(s) 237, 378, 440, 701
TscAI CASTG 4 cut(s) 274, 735, 985, 1159
TseFI GTSAC 2 cut(s) 247, 739
TseI GCWGC 3 cut(s) 550, 656, 955
Tsp45I GTSAC 2 cut(s) 247, 739
TspDTI ATGAA 1 cut(s) 833
TspRI CASTG 4 cut(s) 274, 735, 985, 1159
VpaK11BI GGWCC 3 cut(s) 432, 830, 914
XapI RAATTY 3 cut(s) 346, 386, 691
XceI RCATGY 1 cut(s) 737
XcmI CCANNNNNNNNNTGG 2 cut(s) 442, 959
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 2 cut(s) 519, 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.