RchiOBHm_Chr1g0360201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005601
Physical Location & Seq
Forward (+)
51954412 .. 51955113
702 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 264 bp
ATGGAAACCAACAACTGCATGTCGGTGCTGTCGTGCGTCAGCACCAACGTCGCCTCGGCCTTCTTCGCCTCCCTGGAGCGCTGCTCCTGCATCAACCTCAGCACCACCGATTTCGAAGACGACGACAACAACATCATCAGCGCCGCCGCCGACGACCACGGCTCCCTCTTGCTCTCCTCCGGGCCCACCTCGGAGACGGCCCAGCCCAATCTCAATCTCAATCTCAATCAGCCCGCCCCGGCCGCCCACGAGGTCGCCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.06

Weight (kDa)

4.05

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 144, 147, 234, 243, 258
AcoI YGGCCR 1 cut(s) 240
AfeI AGCGCT 1 cut(s) 80
AjnI CCWGG 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 188
Aor51HI AGCGCT 1 cut(s) 80
AoxI GGCC 4 cut(s) 57, 182, 198, 240
ApaI GGGCCC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 81
AspLEI GCGC 2 cut(s) 81, 143
AspS9I GGNCC 3 cut(s) 182, 183, 199
AsuC2I CCSGG 2 cut(s) 181, 239
AsuII TTCGAA 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 186
BanII GRGCYC 1 cut(s) 186
BauI CACGAG 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 123
BbvCI CCTCAGC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 68
BceAI ACGGC 2 cut(s) 175, 213
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BciT130I CCWGG 1 cut(s) 74
BcnI CCSGG 2 cut(s) 181, 239
BcoDI GTCTC 1 cut(s) 188
BfoI RGCGCY 2 cut(s) 82, 144
BisI GCNGC 5 cut(s) 82, 144, 147, 243, 258
BlsI GCNGC 5 cut(s) 83, 145, 148, 244, 259
Bme1390I CCNGG 3 cut(s) 74, 181, 239
BmgT120I GGNCC 3 cut(s) 182, 183, 199
BmiI GGNNCC 2 cut(s) 163, 184
BmrFI CCNGG 3 cut(s) 74, 181, 239
BmsI GCATC 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 123
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BpmI CTGGAG 1 cut(s) 95
Bpu10I CCTNAGC 1 cut(s) 98
Bpu14I TTCGAA 1 cut(s) 114
BpuMI CCSGG 2 cut(s) 181, 239
BsaJI CCNNGG 5 cut(s) 54, 72, 157, 189, 237
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 5 cut(s) 54, 72, 157, 189, 237
BseMII CTCAG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 166
BseSI GKGCMC 1 cut(s) 186
BseX3I CGGCCG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 4 cut(s) 59, 184, 200, 242
BsiEI CGRYCG 1 cut(s) 243
BsiSI CCGG 2 cut(s) 180, 239
BsmAI GTCTC 1 cut(s) 188
BsmBI CGTCTC 1 cut(s) 188
BsnI GGCC 4 cut(s) 59, 184, 200, 242
Bsp119I TTCGAA 1 cut(s) 114
Bsp120I GGGCCC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 186
BspACI CCGC 5 cut(s) 144, 147, 234, 243, 258
BspANI GGCC 4 cut(s) 59, 184, 200, 242
BspCNI CTCAG 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 163, 184
BspT104I TTCGAA 1 cut(s) 114
BssECI CCNNGG 5 cut(s) 54, 72, 157, 189, 237
BssSI CACGAG 1 cut(s) 248
Bst2BI CACGAG 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 74
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 98
BstDSI CCRYGG 1 cut(s) 157
BstH2I RGCGCY 2 cut(s) 82, 144
BstHHI GCGC 2 cut(s) 81, 143
BstMAI GTCTC 1 cut(s) 188
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 3 cut(s) 65, 87, 242
BstNI CCWGG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 3 cut(s) 72, 179, 237
BstSLI GKGCMC 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 123
BstZI CGGCCG 1 cut(s) 240
BsuRI GGCC 4 cut(s) 59, 184, 200, 242
BtgI CCRYGG 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 234
CfoI GCGC 2 cut(s) 81, 143
Cfr13I GGNCC 3 cut(s) 182, 183, 199
CseI GACGC 1 cut(s) 25
CviAII CATG 1 cut(s) 19
CviJI RGCY 7 cut(s) 59, 162, 184, 200, 205, 232, 242
CviKI_1 RGCY 7 cut(s) 59, 162, 184, 200, 205, 232, 242
DdeI CTNAG 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 240
EagI CGGCCG 1 cut(s) 240
EclXI CGGCCG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 186
Eco47III AGCGCT 1 cut(s) 80
Eco52I CGGCCG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 186
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 1 cut(s) 22
FaiI YATR 1 cut(s) 20
FatI CATG 1 cut(s) 18
FauI CCCGC 1 cut(s) 241
Fnu4HI GCNGC 5 cut(s) 82, 144, 147, 243, 258
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 5 cut(s) 82, 144, 147, 243, 258
GlaI GCGC 2 cut(s) 80, 142
GluI GCNGC 5 cut(s) 82, 144, 147, 243, 258
GsaI CCCAGC 1 cut(s) 205
GsuI CTGGAG 1 cut(s) 95
HaeII RGCGCY 2 cut(s) 82, 144
HaeIII GGCC 4 cut(s) 59, 184, 200, 242
HapII CCGG 2 cut(s) 180, 239
HgaI GACGC 1 cut(s) 25
HhaI GCGC 2 cut(s) 81, 143
Hin1II CATG 1 cut(s) 22
Hin6I GCGC 2 cut(s) 79, 141
HinP1I GCGC 2 cut(s) 79, 141
HpaII CCGG 2 cut(s) 180, 239
Hpy188I TCNGA 1 cut(s) 193
Hpy99I CGWCG 3 cut(s) 53, 125, 155
HpyAV CCTTC 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 18, 90
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 87, 242
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 1 cut(s) 22
HspAI GCGC 2 cut(s) 79, 141
LmnI GCTCC 3 cut(s) 76, 89, 167
LpnPI CCDG 6 cut(s) 59, 86, 100, 193, 215, 252
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 1 cut(s) 99
MaeII ACGT 1 cut(s) 48
MboII GAAGA 2 cut(s) 55, 128
MhlI GDGCHC 1 cut(s) 186
MnlI CCTC 7 cut(s) 64, 79, 107, 176, 187, 199, 244
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 2 cut(s) 180, 239
MspR9I CCNGG 3 cut(s) 74, 181, 239
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 3 cut(s) 65, 87, 242
NciI CCSGG 2 cut(s) 181, 239
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 2 cut(s) 163, 184
NmeAIII GCCGAG 1 cut(s) 35
NspI RCATGY 1 cut(s) 22
NspV TTCGAA 1 cut(s) 114
PcsI WCGNNNNNNNCGW 2 cut(s) 29, 120
PkrI GCNGC 5 cut(s) 83, 145, 148, 244, 259
Psp6I CCWGG 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 201
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 163, 184
PspOMI GGGCCC 1 cut(s) 182
PspPI GGNCC 3 cut(s) 182, 183, 199
RseI CAYNNNNRTG 1 cut(s) 23
SatI GCNGC 5 cut(s) 82, 144, 147, 243, 258
Sau96I GGNCC 3 cut(s) 182, 183, 199
ScrFI CCNGG 3 cut(s) 74, 181, 239
SduI GDGCHC 1 cut(s) 186
SetI ASST 4 cut(s) 51, 99, 191, 255
SfaNI GCATC 1 cut(s) 99
SfuI TTCGAA 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 23
SsiI CCGC 5 cut(s) 144, 147, 234, 243, 258
StyD4I CCNGG 3 cut(s) 72, 179, 237
TaiI ACGT 1 cut(s) 51
TaqI TCGA 1 cut(s) 114
TauI GCSGC 4 cut(s) 146, 149, 245, 260
TseI GCWGC 1 cut(s) 81
XceI RCATGY 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.