RchiOBHm_Chr1g0370481

phosphatase 2C

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
59996276 .. 59998291
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1272 bp
ATGACCACGTCGCTCTCCGGCTCCTCTCCACTACTATACATATATATCACCCAAAGCCCGCCCTTGGATCAAAAGCAACACAAACCGAAGCGAAAAAAATTTCACCGGAAAATAGAAAACACAAACGAAATGCCTTGCGCTTTAGCGGTACCAAACTCTCCGATCTTCTCACCGTCGAAAATTCCGTCCATTTTCTGCCGGTCATCTCCTTCTTCATGTTCTTCTCCTAGAGTACTTCTCCATGGTCCACCTCCAACGCCGTCGTCACGGTCCAACAACCCACTTTCGTCGCCGAAGGCTTTCCCGGCAAGGTTTCAGAGTCAGAGGCATGTGATTAGTAACTGCAAGAAGGAGCCGTCGGGTTTGGGCTCGGGTCCGGCTTTGGCTTTGAAGAGGAAGAGGCCGATGAGGATTGATATTCCGACTGCGCCGGTGAGTTTCGGCGTTGACTCGCCGAAGGTTGAGGAGAGAGTGGAGGCGGTGGAGGTTGACGAAGATGGTTACTCGGTTTACTGTAAGAGAGGGAAAAGAGGTCTCATGGAGGATCGGTACTCCGCCGTGGTTGATCTTCATGATAATACCAGACAGGCGTTCTTTGGTGTGTTTGATGGGCATGGAGGTTCAAAGGCAGCTGAATTTGCAGCAAAGAACTTGGATAAGAACATCGTGCGTCGTTTGGCGAGTGGAGGAGAAGAGAAGGTCATGGAAGCAGTGAAAGATGGTTATTTGGCGACCGATGTTGAGTTTTTGAAAGAGGATGTTAGTGGTGGTGCTTGCTGTGTGACTGCCTTGGTACAGAAAGGTAACCTGGTGGTGTCGAATGCTGGTGATTGCCGCGCTGTTATGAGCCGAGGAGGGGTTGCTGAGGCCCTTACGTCTGATCATCATCCTAGTAGAACAGATGAAAGAGCCAGACTTGAAAGCTCGGGTGGTTATGTGGATTGTTGCCGTGGTGTTTGGAGAATACAAGGGTCTCTTGCTGTTTCAAGAGGAATTGGAGATCGACAGCTAAAGCAGTGGGTTATAGCAGAACCAGAGACTCAAGTCCTAAAAATAAATCCTGAATGCGAGTTCTTAATGTTAGCTTCTGACGGTCTTTGGGACAAGGTTACTAATCAAGAGGCAGTTGATGTAGTTCGCCCTCTATGCGTTGGAATTGATAAGCCGGAGCTGTTTTCTGCTTGTAAAAAGCTTGTTGATCTTTCAATAAGTAGAGGTTCCATGGATGATACAAGCGTAATGATAATCCAATTAGGCCGTTTTGTTTCGTAA

Protein Analysis

423

Amino Acids

46.09

Weight (kDa)

8.79

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 169 - 410 4.6e-59 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 148
AccII CGCG 1 cut(s) 837
AciI CCGC 5 cut(s) 59, 146, 479, 555, 835
AclWI GGATC 2 cut(s) 75, 552
AcsI RAATTY 3 cut(s) 98, 180, 635
AfaI GTAC 4 cut(s) 150, 234, 551, 795
AfiI CCNNNNNNNGG 2 cut(s) 64, 856
AgsI TTSAA 6 cut(s) 391, 624, 751, 920, 987, 1206
AjiI CACGTC 1 cut(s) 9
AjnI CCWGG 1 cut(s) 807
AluBI AGCT 6 cut(s) 632, 924, 1009, 1085, 1171, 1192
AluI AGCT 6 cut(s) 632, 924, 1009, 1085, 1171, 1192
Alw26I GTCTC 3 cut(s) 539, 978, 1031
AlwI GGATC 2 cut(s) 75, 552
Ama87I CYCGRG 2 cut(s) 370, 925
AoxI GGCC 3 cut(s) 401, 867, 1255
ApeKI GCWGC 2 cut(s) 629, 641
ApoI RAATTY 3 cut(s) 98, 180, 635
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
Asp700I GAANNNNTTC 1 cut(s) 299
Asp718I GGTACC 1 cut(s) 148
AspLEI GCGC 3 cut(s) 140, 430, 839
AspS9I GGNCC 4 cut(s) 245, 270, 374, 868
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 5 cut(s) 40, 95, 162, 445, 839
AvaI CYCGRG 2 cut(s) 370, 925
AvaII GGWCC 3 cut(s) 245, 270, 374
BaeI ACNNNNGTAYC 2 cut(s) 1221, 1254
BanI GGYRCC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 371
BbvCI CCTCAGC 1 cut(s) 864
BbvI GCAGC 2 cut(s) 641, 653
BccI CCATC 3 cut(s) 491, 602, 713
BceAI ACGGC 5 cut(s) 244, 340, 542, 933, 1242
BciT130I CCWGG 1 cut(s) 809
BclI TGATCA 1 cut(s) 880
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 3 cut(s) 539, 978, 1031
BfaI CTAG 2 cut(s) 228, 891
BisI GCNGC 3 cut(s) 630, 642, 835
BlsI GCNGC 3 cut(s) 631, 643, 836
BmcAI AGTACT 1 cut(s) 234
Bme1390I CCNGG 2 cut(s) 305, 809
Bme18I GGWCC 3 cut(s) 245, 270, 374
BmeT110I CYCGRG 2 cut(s) 370, 925
BmgBI CACGTC 1 cut(s) 9
BmgT120I GGNCC 4 cut(s) 245, 270, 374, 868
BmiI GGNNCC 5 cut(s) 22, 150, 354, 375, 1219
BmrFI CCNGG 2 cut(s) 305, 809
BoxI GACNNNNGTC 1 cut(s) 1043
BplI GAGNNNNNCTC 2 cut(s) 222, 254
Bpu10I CCTNAGC 1 cut(s) 864
BpuEI CTTGAG 1 cut(s) 1026
BpuMI CCSGG 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 885
BsaI GGTCTC 2 cut(s) 539, 978
BsaJI CCNNGG 7 cut(s) 63, 241, 558, 789, 850, 949, 1221
BsaWI WCCGGW 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 856
Bse118I RCCGGY 2 cut(s) 198, 430
Bse8I GATNNNNATC 1 cut(s) 885
BseBI CCWGG 1 cut(s) 809
BseDI CCNNGG 7 cut(s) 63, 241, 558, 789, 850, 949, 1221
BseGI GGATG 3 cut(s) 763, 886, 1231
BseJI GATNNNNATC 1 cut(s) 885
BseLI CCNNNNNNNGG 2 cut(s) 64, 856
BseMII CTCAG 1 cut(s) 855
BseRI GAGGAG 4 cut(s) 13, 479, 702, 867
BseXI GCAGC 2 cut(s) 641, 653
Bsh1236I CGCG 1 cut(s) 837
Bsh1285I CGRYCG 1 cut(s) 735
BshFI GGCC 3 cut(s) 403, 869, 1257
BshNI GGYRCC 1 cut(s) 148
BsiEI CGRYCG 1 cut(s) 735
BsiHKCI CYCGRG 2 cut(s) 370, 925
BsiSI CCGG 7 cut(s) 18, 106, 199, 305, 377, 431, 1166
BslFI GGGAC 1 cut(s) 1115
BslI CCNNNNNNNGG 2 cut(s) 64, 856
BsmAI GTCTC 3 cut(s) 539, 978, 1031
BsmFI GGGAC 1 cut(s) 1115
BsmI GAATGC 2 cut(s) 826, 1070
BsnI GGCC 3 cut(s) 403, 869, 1257
Bso31I GGTCTC 2 cut(s) 539, 978
BsoBI CYCGRG 2 cut(s) 370, 925
Bsp1286I GDGCHC 1 cut(s) 371
Bsp143I GATC 7 cut(s) 67, 162, 544, 565, 880, 1000, 1198
Bsp19I CCATGG 2 cut(s) 241, 1221
BspACI CCGC 5 cut(s) 59, 146, 479, 555, 835
BspANI GGCC 3 cut(s) 403, 869, 1257
BspCNI CTCAG 1 cut(s) 856
BspFNI CGCG 1 cut(s) 837
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 5 cut(s) 22, 150, 354, 375, 1219
BspPI GGATC 2 cut(s) 75, 552
BspT107I GGYRCC 1 cut(s) 148
BspTNI GGTCTC 2 cut(s) 539, 978
BsrFI RCCGGY 2 cut(s) 198, 430
BssAI RCCGGY 2 cut(s) 198, 430
BssECI CCNNGG 7 cut(s) 63, 241, 558, 789, 850, 949, 1221
BssMI GATC 7 cut(s) 67, 162, 544, 565, 880, 1000, 1198
BssT1I CCWWGG 4 cut(s) 63, 241, 789, 1221
Bst2UI CCWGG 1 cut(s) 809
Bst4CI ACNGT 4 cut(s) 174, 270, 515, 1094
Bst6I CTCTTC 3 cut(s) 386, 392, 687
BstC8I GCNNGC 2 cut(s) 59, 775
BstDEI CTNAG 1 cut(s) 864
BstDSI CCRYGG 4 cut(s) 241, 558, 949, 1221
BstEII GGTNACC 1 cut(s) 803
BstF5I GGATG 3 cut(s) 763, 886, 1231
BstFNI CGCG 1 cut(s) 837
BstHHI GCGC 3 cut(s) 140, 430, 839
BstKTI GATC 7 cut(s) 70, 165, 547, 568, 883, 1003, 1201
BstMAI GTCTC 3 cut(s) 539, 978, 1031
BstMBI GATC 7 cut(s) 67, 162, 544, 565, 880, 1000, 1198
BstMCI CGRYCG 1 cut(s) 735
BstMWI GCNNNNNNNGC 3 cut(s) 305, 638, 1146
BstNI CCWGG 1 cut(s) 809
BstNSI RCATGY 1 cut(s) 332
BstPAI GACNNNNGTC 1 cut(s) 1043
BstPI GGTNACC 1 cut(s) 803
BstSCI CCNGG 2 cut(s) 303, 807
BstUI CGCG 1 cut(s) 837
BstV1I GCAGC 2 cut(s) 641, 653
BsuRI GGCC 3 cut(s) 403, 869, 1257
BtgI CCRYGG 4 cut(s) 241, 558, 949, 1221
BtrI CACGTC 1 cut(s) 9
BtsCI GGATG 3 cut(s) 763, 886, 1231
BtsI GCAGTG 2 cut(s) 717, 1022
BtsIMutI CAGTG 2 cut(s) 717, 1022
Cac8I GCNNGC 2 cut(s) 59, 775
CciI TCATGA 1 cut(s) 571
CfoI GCGC 3 cut(s) 140, 430, 839
Cfr10I RCCGGY 2 cut(s) 198, 430
Cfr13I GGNCC 4 cut(s) 245, 270, 374, 868
CseI GACGC 1 cut(s) 659
CsiI ACCWGGT 1 cut(s) 807
Csp6I GTAC 4 cut(s) 149, 233, 550, 794
CviAII CATG 8 cut(s) 216, 242, 329, 538, 572, 614, 703, 1222
CviQI GTAC 4 cut(s) 149, 233, 550, 794
DdeI CTNAG 1 cut(s) 864
DpnI GATC 7 cut(s) 69, 164, 546, 567, 882, 1002, 1200
DpnII GATC 7 cut(s) 67, 162, 544, 565, 880, 1000, 1198
Eam1104I CTCTTC 3 cut(s) 386, 392, 687
EarI CTCTTC 3 cut(s) 386, 392, 687
EciI GGCGGA 1 cut(s) 544
Eco130I CCWWGG 4 cut(s) 63, 241, 789, 1221
Eco24I GRGCYC 1 cut(s) 371
Eco31I GGTCTC 2 cut(s) 539, 978
Eco47I GGWCC 3 cut(s) 245, 270, 374
Eco88I CYCGRG 2 cut(s) 370, 925
Eco91I GGTNACC 1 cut(s) 803
EcoO109I RGGNCCY 1 cut(s) 868
EcoO65I GGTNACC 1 cut(s) 803
EcoRII CCWGG 1 cut(s) 807
EcoT14I CCWWGG 4 cut(s) 63, 241, 789, 1221
EcoT38I GRGCYC 1 cut(s) 371
ErhI CCWWGG 4 cut(s) 63, 241, 789, 1221
FaeI CATG 8 cut(s) 219, 245, 332, 541, 575, 617, 706, 1225
FalI AAGNNNNNCTT 2 cut(s) 960, 992
FaqI GGGAC 1 cut(s) 1115
FatI CATG 8 cut(s) 215, 241, 328, 537, 571, 613, 702, 1221
FauI CCCGC 1 cut(s) 66
FbaI TGATCA 1 cut(s) 880
Fnu4HI GCNGC 3 cut(s) 630, 642, 835
FokI GGATG 3 cut(s) 770, 873, 1238
FriOI GRGCYC 1 cut(s) 371
Fsp4HI GCNGC 3 cut(s) 630, 642, 835
FspBI CTAG 2 cut(s) 228, 891
GlaI GCGC 3 cut(s) 139, 429, 838
GluI GCNGC 3 cut(s) 630, 642, 835
HaeIII GGCC 3 cut(s) 403, 869, 1257
HapII CCGG 7 cut(s) 18, 106, 199, 305, 377, 431, 1166
HgaI GACGC 1 cut(s) 659
HhaI GCGC 3 cut(s) 140, 430, 839
Hin1II CATG 8 cut(s) 219, 245, 332, 541, 575, 617, 706, 1225
Hin6I GCGC 3 cut(s) 138, 428, 837
HinP1I GCGC 3 cut(s) 138, 428, 837
HincII GTYRAC 2 cut(s) 448, 490
HindII GTYRAC 2 cut(s) 448, 490
HindIII AAGCTT 1 cut(s) 1190
HinfI GANTC 3 cut(s) 319, 449, 1039
HpaII CCGG 7 cut(s) 18, 106, 199, 305, 377, 431, 1166
HphI GGTGA 5 cut(s) 40, 95, 162, 445, 839
Hpy166II GTNNAC 4 cut(s) 248, 448, 490, 511
Hpy188I TCNGA 6 cut(s) 162, 318, 324, 423, 880, 1090
Hpy188III TCNNGA 4 cut(s) 572, 987, 1061, 1118
Hpy8I GTNNAC 4 cut(s) 248, 448, 490, 511
Hpy99I CGWCG 6 cut(s) 13, 178, 265, 292, 361, 675
HpyAV CCTTC 5 cut(s) 219, 289, 343, 451, 691
HpyCH4III ACNGT 4 cut(s) 174, 270, 515, 1094
HpyCH4IV ACGT 2 cut(s) 8, 875
HpyCH4V TGCA 2 cut(s) 345, 641
HpyF10VI GCNNNNNNNGC 3 cut(s) 305, 638, 1146
HpyF3I CTNAG 1 cut(s) 864
HpySE526I ACGT 2 cut(s) 8, 875
Hsp92II CATG 8 cut(s) 219, 245, 332, 541, 575, 617, 706, 1225
HspAI GCGC 3 cut(s) 138, 428, 837
KpnI GGTACC 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 880
Kzo9I GATC 7 cut(s) 67, 162, 544, 565, 880, 1000, 1198
LmnI GCTCC 3 cut(s) 26, 352, 1168
Lsp1109I GCAGC 2 cut(s) 641, 653
MabI ACCWGGT 1 cut(s) 807
MaeI CTAG 2 cut(s) 228, 891
MaeII ACGT 2 cut(s) 8, 875
MaeIII GTNAC 6 cut(s) 264, 338, 500, 781, 803, 1108
MalI GATC 7 cut(s) 69, 164, 546, 567, 882, 1002, 1200
MboI GATC 7 cut(s) 67, 162, 544, 565, 880, 1000, 1198
MboII GAAGA 8 cut(s) 157, 204, 213, 403, 409, 506, 560, 704
MhlI GDGCHC 1 cut(s) 371
MluCI AATT 6 cut(s) 98, 180, 635, 993, 1155, 1250
MlyI GAGTC 3 cut(s) 328, 443, 1033
MmeI TCCRAC 4 cut(s) 278, 297, 446, 1132
MroXI GAANNNNTTC 1 cut(s) 299
MseI TTAA 1 cut(s) 1076
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 7 cut(s) 18, 106, 199, 305, 377, 431, 1166
MspR9I CCNGG 2 cut(s) 305, 809
Mva1269I GAATGC 2 cut(s) 826, 1070
MvaI CCWGG 1 cut(s) 809
MvnI CGCG 1 cut(s) 837
MwoI GCNNNNNNNGC 3 cut(s) 305, 638, 1146
NciI CCSGG 1 cut(s) 305
NcoI CCATGG 2 cut(s) 241, 1221
NdeII GATC 7 cut(s) 67, 162, 544, 565, 880, 1000, 1198
NlaIII CATG 8 cut(s) 219, 245, 332, 541, 575, 617, 706, 1225
NlaIV GGNNCC 5 cut(s) 22, 150, 354, 375, 1219
NmeAIII GCCGAG 1 cut(s) 875
NmuCI GTSAC 2 cut(s) 264, 781
NspI RCATGY 1 cut(s) 332
PagI TCATGA 1 cut(s) 571
PcsI WCGNNNNNNNCGW 1 cut(s) 182
PctI GAATGC 2 cut(s) 826, 1070
PdmI GAANNNNTTC 1 cut(s) 299
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 3 cut(s) 631, 643, 836
PleI GAGTC 3 cut(s) 327, 443, 1033
PpsI GAGTC 3 cut(s) 327, 443, 1033
PshAI GACNNNNGTC 1 cut(s) 1043
Psp6I CCWGG 1 cut(s) 807
PspEI GGTNACC 1 cut(s) 803
PspGI CCWGG 1 cut(s) 807
PspN4I GGNNCC 5 cut(s) 22, 150, 354, 375, 1219
PspPI GGNCC 4 cut(s) 245, 270, 374, 868
PsyI GACNNNGTC 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 632
RsaI GTAC 4 cut(s) 150, 234, 551, 795
RsaNI GTAC 4 cut(s) 149, 233, 550, 794
SaqAI TTAA 1 cut(s) 1076
SatI GCNGC 3 cut(s) 630, 642, 835
Sau3AI GATC 7 cut(s) 67, 162, 544, 565, 880, 1000, 1198
Sau96I GGNCC 4 cut(s) 245, 270, 374, 868
ScaI AGTACT 1 cut(s) 234
SchI GAGTC 3 cut(s) 328, 443, 1033
ScrFI CCNGG 2 cut(s) 305, 809
SduI GDGCHC 1 cut(s) 371
SexAI ACCWGGT 1 cut(s) 807
SgrAI CRCCGGYG 1 cut(s) 430
SinI GGWCC 3 cut(s) 245, 270, 374
SmlI CTYRAG 1 cut(s) 1041
SmoI CTYRAG 1 cut(s) 1041
Sse9I AATT 6 cut(s) 98, 180, 635, 993, 1155, 1250
SsiI CCGC 5 cut(s) 59, 146, 479, 555, 835
SspMI CTAG 2 cut(s) 228, 891
StyD4I CCNGG 2 cut(s) 303, 807
StyI CCWWGG 4 cut(s) 63, 241, 789, 1221
TaaI ACNGT 4 cut(s) 174, 270, 515, 1094
TaiI ACGT 2 cut(s) 11, 878
TaqI TCGA 3 cut(s) 176, 818, 1003
TaqII GACCGA 1 cut(s) 749
TasI AATT 6 cut(s) 98, 180, 635, 993, 1155, 1250
TatI WGTACW 1 cut(s) 232
TauI GCSGC 1 cut(s) 837
Tru1I TTAA 1 cut(s) 1076
Tru9I TTAA 1 cut(s) 1076
TscAI CASTG 2 cut(s) 717, 1022
TseFI GTSAC 2 cut(s) 264, 781
TseI GCWGC 2 cut(s) 629, 641
Tsp45I GTSAC 2 cut(s) 264, 781
TspDTI ATGAA 3 cut(s) 204, 560, 918
TspGWI ACGGA 1 cut(s) 174
TspRI CASTG 2 cut(s) 717, 1022
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 3 cut(s) 245, 270, 374
XapI RAATTY 3 cut(s) 98, 180, 635
XceI RCATGY 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 299
XspI CTAG 2 cut(s) 228, 891
ZrmI AGTACT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.