Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005347

Physical Location & Seq

Genomic Coordinates Reverse (-)

60392027 .. 60393064

Gene Structure 1038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGACACCGCCTCCCCGTACCCCTGCGCCAACAGCGCGTTAAGCAACACGCGCTTCTTCGACCTGAAGCCTCCACTCTCCGAACCTGTCCTCCAAGCCCTAACCGAAGGGGGCTTCGACTTCTGCACTCCGGTTCAAGCCGCCACAATCCCCTTGCTATGCAGCTTCAAGGACGTCGCCGTCGACGCCGCCACCGGCTCCGGCAAAACCCTCGCCTTCGTCGTCCCACTCGTAGAGATCCTCCGCCGCGCTTCCACCAACCCCAAACCTCACCAGGTTATGGGGATGATTATATCTCCGACGAGAGAGCTGTCGTCGCAAATTTACAACGTGGCGAAGCCCTTCATTTCGACATTGCCGAATTTCAAGTGTGTGCTTTTGGTTGGGGGAGGGCAAGTGAAAGCAGACGTGAAGCTAATACAGGAGGAGGGAGCCAATTTGCTGATTGGCACACCAGGTAGATTGTATGACATTATGGAACGCATGGATAGCTTGGATTTGCGCAACTTTGAGATTTTGATCTTAGATGAGGCGGATAGGCTGTTGGATATGGGATTCCAAAAGCAGCTGACTGATATTATATCTCGCGTGCCAAAGCTTCGAAGAACTGGTCTTTTTTCAGCTACACAGACTGAGGCAGTTGAAGAGCTGGCCAGGGCGGGGTTGAGGAATCCTGTGAGGGTTGAAGTACGGGCGGAATCAAAATCAAATAAGGATTCAGCGTTGTCACAGCAATCTGCGTCATCCAAAACACCTTCTGGCCTTGCCATTGAGGCATGCTCTTTAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003727 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008187 GO:0008266 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

263

Amino Acids

28.48

Weight (kDa)

5.98

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	43 - 216	7.4e-42	DEAD/DEAH box helicase
ResIII	PF04851	57 - 199	3.4e-07	Type III restriction enzyme, res subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71280 AT1G71280 AT1G71370 AT5G05450
fragaria_vesca	FvH4_6g01590 FvH4_6g01590 FvH4_6g01590 FvH4_6g03480 FvH4_7g25130 FvH4_7g25130 FvH4_7g25130
malus_domestica	MD01G1158100.v1.1 MD07G1226800.v1.1
prunus_persica	Prupe.2G256400_v2.0.a1
pyrus_communis	pycom01g17480 pycom07g20540
rosa_chinensis	RchiOBHm_Chr1g0371021 RchiOBHm_Chr1g0371031
rosa_laevigata	RLG00000026991
rosa_multiflora	Rmu_co8450187.1_g000001 Rmu_sc0001018.1_g000027 Rmu_sc0003272.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286030
rosa_rugosa	Rorug01G0360900
rosa_samantha	Rh1AG371200 Rh1BG334700 Rh1CG348000 Rh1DG365900
rosa_wichuraiana	Rw1G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AatII	GACGTC	1 cut(s)	177
Acc16I	TGCGCA	1 cut(s)	503
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	4 cut(s)	38, 52, 249, 588
AciI	CCGC	8 cut(s)	9, 141, 189, 244, 247, 533, 659, 695
AclWI	GGATC	1 cut(s)	232
AcoI	YGGCCR	1 cut(s)	651
AcsI	RAATTY	2 cut(s)	321, 361
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	2 cut(s)	174, 186
AfaI	GTAC	2 cut(s)	20, 690
AfiI	CCNNNNNNNGG	2 cut(s)	280, 660
AgsI	TTSAA	5 cut(s)	137, 169, 367, 644, 686
AjiI	CACGTC	1 cut(s)	409
AjnI	CCWGG	3 cut(s)	273, 454, 653
AloI	GAACNNNNNNTCC	2 cut(s)	75, 107
AluBI	AGCT	8 cut(s)	165, 310, 415, 492, 568, 598, 623, 649
AluI	AGCT	8 cut(s)	165, 310, 415, 492, 568, 598, 623, 649
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	2 cut(s)	651, 760
ApeKI	GCWGC	2 cut(s)	162, 565
ApoI	RAATTY	2 cut(s)	321, 361
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	5 cut(s)	29, 38, 54, 251, 504
AsuHPI	GGTGA	1 cut(s)	263
AsuII	TTCGAA	1 cut(s)	601
BalI	TGGCCA	1 cut(s)	653
BbvI	GCAGC	2 cut(s)	174, 577
BceAI	ACGGC	1 cut(s)	164
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciT130I	CCWGG	3 cut(s)	275, 456, 655
BglI	GCCNNNNNGGC	1 cut(s)	773
BisI	GCNGC	5 cut(s)	141, 163, 189, 247, 566
BlsI	GCNGC	5 cut(s)	142, 164, 190, 248, 567
Bme1390I	CCNGG	3 cut(s)	275, 456, 655
BmgBI	CACGTC	1 cut(s)	409
BmiI	GGNNCC	2 cut(s)	199, 433
BmrFI	CCNGG	3 cut(s)	275, 456, 655
BplI	GAGNNNNNCTC	1 cut(s)	764
Bpu14I	TTCGAA	1 cut(s)	601
BsaBI	GATNNNNATC	1 cut(s)	518
BsaHI	GRCGYC	2 cut(s)	174, 186
BsaJI	CCNNGG	1 cut(s)	654
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	5 cut(s)	26, 75, 105, 381, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 660
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	613
Bse3DI	GCAATG	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	518
BseBI	CCWGG	3 cut(s)	275, 456, 655
BseDI	CCNNGG	1 cut(s)	654
BseGI	GGATG	2 cut(s)	291, 743
BseJI	GATNNNNATC	1 cut(s)	518
BseLI	CCNNNNNNNGG	2 cut(s)	280, 660
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	624
BseNI	ACTGG	1 cut(s)	613
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	2 cut(s)	174, 577
BsgI	GTGCAG	1 cut(s)	109
Bsh1236I	CGCG	4 cut(s)	38, 52, 249, 588
BshFI	GGCC	2 cut(s)	653, 762
BsiSI	CCGG	3 cut(s)	131, 195, 201
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	280, 660
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	653, 762
Bsp119I	TTCGAA	1 cut(s)	601
Bsp143I	GATC	2 cut(s)	237, 519
BspACI	CCGC	8 cut(s)	9, 141, 189, 244, 247, 533, 659, 695
BspANI	GGCC	2 cut(s)	653, 762
BspCNI	CTCAG	1 cut(s)	625
BspFNI	CGCG	4 cut(s)	38, 52, 249, 588
BspLI	GGNNCC	2 cut(s)	199, 433
BspPI	GGATC	1 cut(s)	232
BspQI	GCTCTTC	1 cut(s)	639
BspT104I	TTCGAA	1 cut(s)	601
BsrDI	GCAATG	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	613
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	654
BssMI	GATC	2 cut(s)	237, 519
BssNI	GRCGYC	2 cut(s)	174, 186
Bst2UI	CCWGG	3 cut(s)	275, 456, 655
Bst6I	CTCTTC	1 cut(s)	639
BstACI	GRCGYC	2 cut(s)	174, 186
BstBI	TTCGAA	1 cut(s)	601
BstC8I	GCNNGC	3 cut(s)	590, 651, 778
BstDEI	CTNAG	2 cut(s)	523, 633
BstF5I	GGATG	2 cut(s)	291, 743
BstFNI	CGCG	4 cut(s)	38, 52, 249, 588
BstHHI	GCGC	5 cut(s)	29, 38, 54, 251, 504
BstKTI	GATC	2 cut(s)	240, 522
BstMBI	GATC	2 cut(s)	237, 519
BstMWI	GCNNNNNNNGC	8 cut(s)	33, 35, 42, 51, 185, 316, 489, 773
BstNI	CCWGG	3 cut(s)	275, 456, 655
BstNSI	RCATGY	1 cut(s)	780
BstSCI	CCNGG	3 cut(s)	273, 454, 653
BstUI	CGCG	4 cut(s)	38, 52, 249, 588
BstV1I	GCAGC	2 cut(s)	174, 577
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	2 cut(s)	653, 762
BtrI	CACGTC	1 cut(s)	409
BtsCI	GGATG	2 cut(s)	291, 743
Cac8I	GCNNGC	3 cut(s)	590, 651, 778
CfoI	GCGC	5 cut(s)	29, 38, 54, 251, 504
Cfr10I	RCCGGY	1 cut(s)	194
CseI	GACGC	2 cut(s)	194, 729
CsiI	ACCWGGT	2 cut(s)	273, 454
Csp6I	GTAC	2 cut(s)	19, 689
CviAII	CATG	2 cut(s)	484, 777
CviQI	GTAC	2 cut(s)	19, 689
DdeI	CTNAG	2 cut(s)	523, 633
DpnI	GATC	2 cut(s)	239, 521
DpnII	GATC	2 cut(s)	237, 519
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	651
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
EciI	GGCGGA	3 cut(s)	233, 548, 710
Eco57I	CTGAAG	1 cut(s)	86
EcoRII	CCWGG	3 cut(s)	273, 454, 653
FaeI	CATG	2 cut(s)	487, 780
FaiI	YATR	9 cut(s)	160, 281, 293, 468, 476, 485, 551, 581, 778
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	483, 776
FauI	CCCGC	1 cut(s)	652
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	5 cut(s)	141, 163, 189, 247, 566
FokI	GGATG	2 cut(s)	298, 730
Fsp4HI	GCNGC	5 cut(s)	141, 163, 189, 247, 566
FspI	TGCGCA	1 cut(s)	503
GlaI	GCGC	5 cut(s)	28, 37, 53, 250, 503
GluI	GCNGC	5 cut(s)	141, 163, 189, 247, 566
HaeIII	GGCC	2 cut(s)	653, 762
HapII	CCGG	3 cut(s)	131, 195, 201
HgaI	GACGC	2 cut(s)	194, 729
HhaI	GCGC	5 cut(s)	29, 38, 54, 251, 504
Hin1I	GRCGYC	2 cut(s)	174, 186
Hin1II	CATG	2 cut(s)	487, 780
Hin6I	GCGC	5 cut(s)	27, 36, 52, 249, 502
HinP1I	GCGC	5 cut(s)	27, 36, 52, 249, 502
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	4 cut(s)	555, 670, 698, 716
HpaII	CCGG	3 cut(s)	131, 195, 201
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	82, 300
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	6 cut(s)	179, 185, 188, 224, 304, 319
HpyAV	CCTTC	4 cut(s)	101, 226, 352, 765
HpyCH4IV	ACGT	3 cut(s)	174, 330, 408
HpyCH4V	TGCA	2 cut(s)	126, 162
HpyF10VI	GCNNNNNNNGC	8 cut(s)	33, 35, 42, 51, 185, 316, 489, 773
HpyF3I	CTNAG	2 cut(s)	523, 633
HpySE526I	ACGT	3 cut(s)	174, 330, 408
Hsp92I	GRCGYC	2 cut(s)	174, 186
Hsp92II	CATG	2 cut(s)	487, 780
HspAI	GCGC	5 cut(s)	27, 36, 52, 249, 502
Kzo9I	GATC	2 cut(s)	237, 519
LguI	GCTCTTC	1 cut(s)	639
LmnI	GCTCC	2 cut(s)	203, 431
Lsp1109I	GCAGC	2 cut(s)	174, 577
MabI	ACCWGGT	2 cut(s)	273, 454
MaeII	ACGT	3 cut(s)	174, 330, 408
MaeIII	GTNAC	1 cut(s)	726
MalI	GATC	2 cut(s)	239, 521
MboI	GATC	2 cut(s)	237, 519
MboII	GAAGA	3 cut(s)	49, 615, 656
MflI	RGATCY	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	653
MluCI	AATT	3 cut(s)	321, 361, 436
MluNI	TGGCCA	1 cut(s)	653
MmeI	TCCRAC	2 cut(s)	323, 525
Mox20I	TGGCCA	1 cut(s)	653
MroXI	GAANNNNTTC	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	653
MseI	TTAA	3 cut(s)	41, 785, 790
Msp20I	TGGCCA	1 cut(s)	653
MspA1I	CMGCKG	1 cut(s)	568
MspI	CCGG	3 cut(s)	131, 195, 201
MspR9I	CCNGG	3 cut(s)	275, 456, 655
MvaI	CCWGG	3 cut(s)	275, 456, 655
MvnI	CGCG	4 cut(s)	38, 52, 249, 588
MwoI	GCNNNNNNNGC	8 cut(s)	33, 35, 42, 51, 185, 316, 489, 773
NdeII	GATC	2 cut(s)	237, 519
NlaIII	CATG	2 cut(s)	487, 780
NlaIV	GGNNCC	2 cut(s)	199, 433
NmuCI	GTSAC	1 cut(s)	726
NsbI	TGCGCA	1 cut(s)	503
NspI	RCATGY	1 cut(s)	780
NspV	TTCGAA	1 cut(s)	601
PaeI	GCATGC	1 cut(s)	780
PciSI	GCTCTTC	1 cut(s)	639
PcsI	WCGNNNNNNNCGW	4 cut(s)	180, 219, 228, 356
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	4 cut(s)	555, 670, 698, 716
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	5 cut(s)	142, 164, 190, 248, 567
Psp6I	CCWGG	3 cut(s)	273, 454, 653
PspGI	CCWGG	3 cut(s)	273, 454, 653
PspN4I	GGNNCC	2 cut(s)	199, 433
PsuI	RGATCY	1 cut(s)	237
PvuII	CAGCTG	1 cut(s)	568
RsaI	GTAC	2 cut(s)	20, 690
RsaNI	GTAC	2 cut(s)	19, 689
SalI	GTCGAC	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	3 cut(s)	41, 785, 790
SatI	GCNGC	5 cut(s)	141, 163, 189, 247, 566
Sau3AI	GATC	2 cut(s)	237, 519
ScrFI	CCNGG	3 cut(s)	275, 456, 655
SexAI	ACCWGGT	2 cut(s)	273, 454
SfuI	TTCGAA	1 cut(s)	601
SgrDI	CGTCGACG	1 cut(s)	182
SphI	GCATGC	1 cut(s)	780
Sse9I	AATT	3 cut(s)	321, 361, 436
SsiI	CCGC	8 cut(s)	9, 141, 189, 244, 247, 533, 659, 695
StyD4I	CCNGG	3 cut(s)	273, 454, 653
TaiI	ACGT	3 cut(s)	177, 333, 411
TaqI	TCGA	5 cut(s)	60, 117, 183, 350, 601
TasI	AATT	3 cut(s)	321, 361, 436
TauI	GCSGC	3 cut(s)	143, 191, 249
TfiI	GAWTC	4 cut(s)	555, 670, 698, 716
Tru1I	TTAA	3 cut(s)	41, 785, 790
Tru9I	TTAA	3 cut(s)	41, 785, 790
TseFI	GTSAC	1 cut(s)	726
TseI	GCWGC	2 cut(s)	162, 565
Tsp45I	GTSAC	1 cut(s)	726
TspDTI	ATGAA	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	280
XapI	RAATTY	2 cut(s)	321, 361
XceI	RCATGY	1 cut(s)	780
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	341
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.