RchiOBHm_Chr1g0374251

Cell number regulator 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007068
Physical Location & Seq
Reverse (-)
62146246 .. 62148513
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 732 bp
ATGGCGGACGGAAGCGGTCACTCGCGCTATGTGAAGCTGACGAAAGATCAAGCGCCGCTGCAGGAGGACATTAAGCCCGGCGAGCTCAATCAGCCCATCGATGTTCCTCAGTTGAATGTTAAGAAGTGTCATGAGTGTGGACAACCTTTACCGGAAAGCTTTCAGCCCCCGGCCGATGAACCTTGGACGACTGGAATTTTCGGCTGCAGTGAAGATAGAGACAGTTGCTTGACAGGACTATTTTGTCCCTGTGTTCAGTTTGGGCGTAATATTGAAAACTTAAGAGATGATGTGCCATGGACCACACCATGCATTTGTCATGCCGTTTTTGTTGAAGGTGGCATGGCTGTTGCAGCAGGAACTGCAATCTTCCATGGTGTTGACCCAAGAACTTCATTTCTTATCTGCGAGGGTCTGTTGTTTGCATGGTGGATGTGTGGAGTGTATACAGGTCTTGTTCGGCAATCCTTGCAGAAAAAATATCATCTTAAGAACTCGCCATGTGACCCTTGCTTGGTGCACTGCTGCCTGCACTGGTGTGCCTTGTGTCAGGAGCACAGGGAGATGAAGGGTCGCCTTTCAGAAAATTCTGTTATGCCAATGACCGTTGTCAACCCTCCTCCTGTTCAACAGATGAACAAACCTGCTGATGACAACGACAACCAGGACTCTGCTGCACCGTCCTCTACTACCAACAATGGGCATACTAATATAGAAATGCAGGCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

243

Amino Acids

26.86

Weight (kDa)

5.28

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 62 - 188 1.1e-27 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 243
Acc36I ACCTGC 1 cut(s) 652
AccI GTMKAC 1 cut(s) 446
AccII CGCG 1 cut(s) 25
AciI CCGC 3 cut(s) 5, 15, 56
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 2 cut(s) 195, 586
AfiI CCNNNNNNNGG 2 cut(s) 514, 699
AflII CTTAAG 2 cut(s) 280, 488
AgsI TTSAA 4 cut(s) 115, 275, 335, 629
AjnI CCWGG 1 cut(s) 663
AleI CACNNNNGTG 1 cut(s) 537
AluBI AGCT 3 cut(s) 37, 85, 159
AluI AGCT 3 cut(s) 37, 85, 159
Alw21I GWGCWC 3 cut(s) 87, 522, 558
Alw26I GTCTC 1 cut(s) 213
Alw44I GTGCAC 1 cut(s) 518
AlwNI CAGNNNCTG 1 cut(s) 362
AoxI GGCC 1 cut(s) 171
ApaLI GTGCAC 1 cut(s) 518
ApeKI GCWGC 5 cut(s) 58, 204, 353, 525, 674
ApoI RAATTY 2 cut(s) 195, 586
Asp700I GAANNNNTTC 1 cut(s) 159
AspLEI GCGC 2 cut(s) 27, 55
AspS9I GGNCC 1 cut(s) 300
AsuC2I CCSGG 2 cut(s) 78, 170
AvaII GGWCC 1 cut(s) 300
BaeGI GKGCMC 1 cut(s) 522
BanII GRGCYC 1 cut(s) 87
Bbv12I GWGCWC 3 cut(s) 87, 522, 558
BbvI GCAGC 5 cut(s) 45, 191, 365, 512, 661
BccI CCATC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 308
BciT130I CCWGG 1 cut(s) 665
BcnI CCSGG 2 cut(s) 78, 170
BcoDI GTCTC 1 cut(s) 213
BfmI CTRYAG 2 cut(s) 59, 205
BfoI RGCGCY 1 cut(s) 56
BfrI CTTAAG 2 cut(s) 280, 488
BfuAI ACCTGC 1 cut(s) 652
BisI GCNGC 6 cut(s) 56, 59, 205, 354, 526, 675
BlsI GCNGC 6 cut(s) 57, 60, 206, 355, 527, 676
Bme1390I CCNGG 3 cut(s) 78, 170, 665
Bme18I GGWCC 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 300
BmrFI CCNGG 3 cut(s) 78, 170, 665
BoxI GACNNNNGTC 1 cut(s) 608
BpuMI CCSGG 2 cut(s) 78, 170
Bsa29I ATCGAT 1 cut(s) 99
BsaJI CCNNGG 4 cut(s) 168, 182, 296, 373
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 514, 699
Bse1I ACTGG 2 cut(s) 196, 539
BseBI CCWGG 1 cut(s) 665
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 4 cut(s) 168, 182, 296, 373
BseGI GGATG 1 cut(s) 438
BseLI CCNNNNNNNGG 2 cut(s) 514, 699
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 2 cut(s) 196, 539
BseRI GAGGAG 1 cut(s) 609
BseSI GKGCMC 1 cut(s) 522
BseX3I CGGCCG 1 cut(s) 171
BseXI GCAGC 5 cut(s) 45, 191, 365, 512, 661
BsgI GTGCAG 2 cut(s) 515, 660
Bsh1236I CGCG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 173
BshVI ATCGAT 1 cut(s) 99
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 3 cut(s) 87, 522, 558
BsiSI CCGG 3 cut(s) 78, 152, 170
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 2 cut(s) 514, 699
BsmAI GTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 231
BsnI GGCC 1 cut(s) 173
Bsp1286I GDGCHC 3 cut(s) 87, 522, 558
Bsp143I GATC 1 cut(s) 46
Bsp19I CCATGG 2 cut(s) 296, 373
BspACI CCGC 3 cut(s) 5, 15, 56
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 121
BspDI ATCGAT 1 cut(s) 99
BspFNI CGCG 1 cut(s) 25
BspHI TCATGA 1 cut(s) 130
BspMAI CTGCAG 2 cut(s) 63, 209
BspMI ACCTGC 1 cut(s) 652
BspTI CTTAAG 2 cut(s) 280, 488
BsrI ACTGG 2 cut(s) 196, 539
BssECI CCNNGG 4 cut(s) 168, 182, 296, 373
BssMI GATC 1 cut(s) 46
BssNAI GTATAC 1 cut(s) 447
BssT1I CCWWGG 3 cut(s) 182, 296, 373
Bst1107I GTATAC 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 3 cut(s) 224, 607, 681
BstAFI CTTAAG 2 cut(s) 280, 488
BstAPI GCANNNNNTGC 2 cut(s) 362, 469
BstC8I GCNNGC 3 cut(s) 83, 530, 723
BstDEI CTNAG 1 cut(s) 108
BstDSI CCRYGG 2 cut(s) 296, 373
BstF5I GGATG 1 cut(s) 438
BstFNI CGCG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 2 cut(s) 27, 55
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 1 cut(s) 46
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 5 cut(s) 82, 91, 353, 362, 469
BstNI CCWGG 1 cut(s) 665
BstPAI GACNNNNGTC 1 cut(s) 608
BstSCI CCNGG 3 cut(s) 76, 168, 663
BstSFI CTRYAG 2 cut(s) 59, 205
BstSLI GKGCMC 1 cut(s) 522
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 5 cut(s) 45, 191, 365, 512, 661
BstZ17I GTATAC 1 cut(s) 447
BstZI CGGCCG 1 cut(s) 171
Bsu15I ATCGAT 1 cut(s) 99
BsuRI GGCC 1 cut(s) 173
BsuTUI ATCGAT 1 cut(s) 99
BtgI CCRYGG 2 cut(s) 296, 373
BtsCI GGATG 1 cut(s) 438
BtsI GCAGTG 2 cut(s) 214, 520
BtsIMutI CAGTG 3 cut(s) 214, 520, 532
BveI ACCTGC 1 cut(s) 652
Cac8I GCNNGC 3 cut(s) 83, 530, 723
CaiI CAGNNNCTG 1 cut(s) 362
CciI TCATGA 1 cut(s) 130
CfoI GCGC 2 cut(s) 27, 55
Cfr13I GGNCC 1 cut(s) 300
ClaI ATCGAT 1 cut(s) 99
CviAII CATG 8 cut(s) 131, 297, 309, 320, 343, 374, 426, 501
CviJI RGCY 9 cut(s) 37, 76, 85, 94, 159, 166, 173, 204, 347
CviKI_1 RGCY 9 cut(s) 37, 76, 85, 94, 159, 166, 173, 204, 347
DdeI CTNAG 1 cut(s) 108
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DrdI GACNNNNNNGTC 1 cut(s) 243
DseDI GACNNNNNNGTC 1 cut(s) 243
EaeI YGGCCR 1 cut(s) 171
EagI CGGCCG 1 cut(s) 171
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 85
EclXI CGGCCG 1 cut(s) 171
Eco130I CCWWGG 3 cut(s) 182, 296, 373
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 300
Eco52I CGGCCG 1 cut(s) 171
Eco53kI GAGCTC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 663
EcoT14I CCWWGG 3 cut(s) 182, 296, 373
EcoT22I ATGCAT 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 3 cut(s) 182, 296, 373
FaeI CATG 8 cut(s) 134, 300, 312, 323, 346, 377, 429, 504
FaqI GGGAC 1 cut(s) 231
FatI CATG 8 cut(s) 130, 296, 308, 319, 342, 373, 425, 500
FblI GTMKAC 1 cut(s) 446
Fnu4HI GCNGC 6 cut(s) 56, 59, 205, 354, 526, 675
FokI GGATG 1 cut(s) 445
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 6 cut(s) 56, 59, 205, 354, 526, 675
GlaI GCGC 2 cut(s) 26, 54
GluI GCNGC 6 cut(s) 56, 59, 205, 354, 526, 675
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 1 cut(s) 173
HapII CCGG 3 cut(s) 78, 152, 170
HhaI GCGC 2 cut(s) 27, 55
Hin1II CATG 8 cut(s) 134, 300, 312, 323, 346, 377, 429, 504
Hin6I GCGC 2 cut(s) 25, 53
HinP1I GCGC 2 cut(s) 25, 53
HincII GTYRAC 2 cut(s) 382, 613
HindII GTYRAC 2 cut(s) 382, 613
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 1 cut(s) 668
HpaII CCGG 3 cut(s) 78, 152, 170
Hpy166II GTNNAC 5 cut(s) 140, 382, 447, 520, 613
Hpy188I TCNGA 1 cut(s) 583
Hpy188III TCNNGA 2 cut(s) 131, 551
Hpy8I GTNNAC 5 cut(s) 140, 382, 447, 520, 613
HpyAV CCTTC 2 cut(s) 329, 562
HpyCH4III ACNGT 3 cut(s) 224, 607, 681
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 91, 353, 362, 469
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 8 cut(s) 134, 300, 312, 323, 346, 377, 429, 504
HspAI GCGC 2 cut(s) 25, 53
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 553
Lsp1109I GCAGC 5 cut(s) 45, 191, 365, 512, 661
MaeIII GTNAC 2 cut(s) 17, 503
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 224, 361
MhlI GDGCHC 3 cut(s) 87, 522, 558
MluCI AATT 2 cut(s) 195, 586
MlyI GAGTC 1 cut(s) 662
MnlI CCTC 6 cut(s) 58, 117, 403, 627, 630, 694
Mph1103I ATGCAT 1 cut(s) 314
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 4 cut(s) 72, 120, 281, 489
MslI CAYNNNNRTG 2 cut(s) 135, 537
MspA1I CMGCKG 1 cut(s) 58
MspCI CTTAAG 2 cut(s) 280, 488
MspI CCGG 3 cut(s) 78, 152, 170
MspR9I CCNGG 3 cut(s) 78, 170, 665
MvaI CCWGG 1 cut(s) 665
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 5 cut(s) 82, 91, 353, 362, 469
NciI CCSGG 2 cut(s) 78, 170
NcoI CCATGG 2 cut(s) 296, 373
NdeII GATC 1 cut(s) 46
NlaIII CATG 8 cut(s) 134, 300, 312, 323, 346, 377, 429, 504
NmuCI GTSAC 2 cut(s) 17, 503
NsiI ATGCAT 1 cut(s) 314
OliI CACNNNNGTG 1 cut(s) 537
PagI TCATGA 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 159
PkrI GCNGC 6 cut(s) 57, 60, 206, 355, 527, 676
PleI GAGTC 1 cut(s) 662
PpsI GAGTC 1 cut(s) 662
PshAI GACNNNNGTC 1 cut(s) 608
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 663
PspGI CCWGG 1 cut(s) 663
PspPI GGNCC 1 cut(s) 300
PstI CTGCAG 2 cut(s) 63, 209
PstNI CAGNNNCTG 1 cut(s) 362
RseI CAYNNNNRTG 2 cut(s) 135, 537
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 4 cut(s) 72, 120, 281, 489
SatI GCNGC 6 cut(s) 56, 59, 205, 354, 526, 675
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 300
SchI GAGTC 1 cut(s) 662
ScrFI CCNGG 3 cut(s) 78, 170, 665
SduI GDGCHC 3 cut(s) 87, 522, 558
SetI ASST 8 cut(s) 39, 87, 148, 161, 184, 340, 454, 646
SfcI CTRYAG 2 cut(s) 59, 205
SinI GGWCC 1 cut(s) 300
SmiMI CAYNNNNRTG 2 cut(s) 135, 537
SmlI CTYRAG 2 cut(s) 280, 488
SmoI CTYRAG 2 cut(s) 280, 488
Sse9I AATT 2 cut(s) 195, 586
SsiI CCGC 3 cut(s) 5, 15, 56
SspI AATATT 1 cut(s) 271
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 3 cut(s) 76, 168, 663
StyI CCWWGG 3 cut(s) 182, 296, 373
TaaI ACNGT 3 cut(s) 224, 607, 681
TaqI TCGA 1 cut(s) 99
TasI AATT 2 cut(s) 195, 586
TauI GCSGC 1 cut(s) 58
Tru1I TTAA 4 cut(s) 72, 120, 281, 489
Tru9I TTAA 4 cut(s) 72, 120, 281, 489
TscAI CASTG 3 cut(s) 214, 527, 539
TseFI GTSAC 2 cut(s) 17, 503
TseI GCWGC 5 cut(s) 58, 204, 353, 525, 674
Tsp45I GTSAC 2 cut(s) 17, 503
TspDTI ATGAA 4 cut(s) 192, 384, 581, 650
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 3 cut(s) 214, 527, 539
Vha464I CTTAAG 2 cut(s) 280, 488
VneI GTGCAC 1 cut(s) 518
VpaK11BI GGWCC 1 cut(s) 300
XapI RAATTY 2 cut(s) 195, 586
XmiI GTMKAC 1 cut(s) 446
XmnI GAANNNNTTC 1 cut(s) 159
Zsp2I ATGCAT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.