Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008172

Physical Location & Seq

Genomic Coordinates Forward (+)

65058112 .. 65059739

Gene Structure 1628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAGTGATGTAATATTTTATTGTTTGATTCAAGATTATTTTCTTCTCATGGAGCCATGGGGCTCCAGCTTCTCATCGTATTCCGTTTATAAACATAGTAGAGTGGAGGATGCTAACTTGAAAAGGGCTCGGGAGGACCTGCAAAACAGAGTTGATTACCTAAAAAAGCAAGCTGAGAGCTATGATGAAAAAGGGCCTGTCATAGATGCTGTTGTATGGCATGATGGAGAAGTATGGAGAGTTTCCATTGATACAGAGACTGTTGAGGATGACCCTGATTGTGGAAAACTCGCTGACTTTTATGGCGTTTTCGGCAAATTGGATGCCTGTAATGTGTATGATGAAGGGAAGATATTGAGGATCGTGACAGATTGCTCTCCCCATGGCACAAATGTTTCTGGCATTGATACTGCTTTACATGCAAAGGCCCGGCCTGTCGAATGGAGTTGCACCTGGAGCACAGTTACATATTGTAAAATTGGGGACGCACGCTTAGGTTCAATAGAGACAAGAACTGGGCTTACTCGAGTTTTGATTGCTGCTGTGGAGGTTTCAAAATCTCTGTTTTGGACATACCAATCTGAGGGTATATATCAGTGTATTGATGGCTGTAATACAATGTTTTTTGCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

211

Amino Acids

23.85

Weight (kDa)

4.78

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378641 RchiOBHm_Chr1g0378651
rosa_laevigata	RLG00000026415
rosa_multiflora	Rmu_sc0002395.1_g000017 Rmu_sc0013199.1_g000009
rosa_roxburghii	Rroxscaffold_3G00228460 Rroxscaffold_4G00278940 Rroxscaffold_4G00278950 Rroxscaffold_5G00358580
rosa_samantha	Rh1AG431900 Rh1AG432000 Rh1AG432600 Rh1AG432700 Rh1BG390300 Rh1BG390500 Rh1BG390700 Rh1BG390800 Rh1CG403400 Rh1CG403500 Rh1DG421400 Rh1DG421600 Rh1DG421800 Rh1DG421900
rosa_wichuraiana	Rw1G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
Acc36I	ACCTGC	1 cut(s)	147
AclWI	GGATC	1 cut(s)	368
AfiI	CCNNNNNNNGG	2 cut(s)	281, 583
AgsI	TTSAA	4 cut(s)	32, 121, 501, 555
AjnI	CCWGG	1 cut(s)	452
AluBI	AGCT	3 cut(s)	69, 173, 180
AluI	AGCT	3 cut(s)	69, 173, 180
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	2 cut(s)	251, 500
AlwI	GGATC	1 cut(s)	368
AlwNI	CAGNNNCTG	1 cut(s)	260
Ama87I	CYCGRG	2 cut(s)	129, 525
AoxI	GGCC	3 cut(s)	194, 426, 431
ApeKI	GCWGC	1 cut(s)	539
AspS9I	GGNCC	3 cut(s)	136, 194, 427
AsuC2I	CCSGG	1 cut(s)	430
AvaI	CYCGRG	2 cut(s)	129, 525
AvaII	GGWCC	1 cut(s)	136
BanII	GRGCYC	2 cut(s)	65, 130
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	1 cut(s)	526
BccI	CCATC	2 cut(s)	218, 599
BciT130I	CCWGG	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	251, 500
BfuAI	ACCTGC	1 cut(s)	147
BisI	GCNGC	1 cut(s)	540
BlsI	GCNGC	1 cut(s)	541
Bme1390I	CCNGG	2 cut(s)	430, 454
Bme18I	GGWCC	1 cut(s)	136
BmeT110I	CYCGRG	2 cut(s)	129, 525
BmgT120I	GGNCC	3 cut(s)	136, 194, 427
BmiI	GGNNCC	2 cut(s)	54, 64
BmrFI	CCNGG	2 cut(s)	430, 454
BmrI	ACTGGG	1 cut(s)	525
BmsI	GCATC	3 cut(s)	100, 196, 313
BmuI	ACTGGG	1 cut(s)	525
BpmI	CTGGAG	2 cut(s)	49, 475
Bpu10I	CCTNAGC	1 cut(s)	493
BpuMI	CCSGG	1 cut(s)	430
BsaJI	CCNNGG	2 cut(s)	56, 382
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 583
Bse1I	ACTGG	1 cut(s)	520
BseBI	CCWGG	1 cut(s)	454
BseDI	CCNNGG	2 cut(s)	56, 382
BseGI	GGATG	3 cut(s)	115, 274, 328
BseLI	CCNNNNNNNGG	2 cut(s)	281, 583
BseMII	CTCAG	2 cut(s)	165, 573
BseNI	ACTGG	1 cut(s)	520
BseXI	GCAGC	1 cut(s)	526
BshFI	GGCC	3 cut(s)	196, 428, 433
BsiHKAI	GWGCWC	1 cut(s)	461
BsiHKCI	CYCGRG	2 cut(s)	129, 525
BsiSI	CCGG	1 cut(s)	430
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	2 cut(s)	281, 583
BsmAI	GTCTC	2 cut(s)	251, 500
BsmFI	GGGAC	1 cut(s)	497
BsnI	GGCC	3 cut(s)	196, 428, 433
BsoBI	CYCGRG	2 cut(s)	129, 525
Bsp1286I	GDGCHC	3 cut(s)	65, 130, 461
Bsp143I	GATC	1 cut(s)	360
Bsp19I	CCATGG	2 cut(s)	56, 382
BspANI	GGCC	3 cut(s)	196, 428, 433
BspCNI	CTCAG	2 cut(s)	166, 574
BspLI	GGNNCC	2 cut(s)	54, 64
BspMI	ACCTGC	1 cut(s)	147
BspPI	GGATC	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	2 cut(s)	56, 382
BssMI	GATC	1 cut(s)	360
BssT1I	CCWWGG	2 cut(s)	56, 382
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	2 cut(s)	262, 463
BstC8I	GCNNGC	2 cut(s)	171, 490
BstDEI	CTNAG	3 cut(s)	174, 493, 582
BstDSI	CCRYGG	2 cut(s)	56, 382
BstF5I	GGATG	3 cut(s)	115, 274, 328
BstKTI	GATC	1 cut(s)	363
BstMAI	GTCTC	2 cut(s)	251, 500
BstMBI	GATC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	3 cut(s)	312, 419, 456
BstNI	CCWGG	1 cut(s)	454
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	2 cut(s)	428, 452
BstV1I	GCAGC	1 cut(s)	526
BsuRI	GGCC	3 cut(s)	196, 428, 433
BtgI	CCRYGG	2 cut(s)	56, 382
BtsCI	GGATG	3 cut(s)	115, 274, 328
BtsIMutI	CAGTG	1 cut(s)	602
BveI	ACCTGC	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	171, 490
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr13I	GGNCC	3 cut(s)	136, 194, 427
CseI	GACGC	1 cut(s)	494
CviAII	CATG	5 cut(s)	49, 57, 221, 383, 419
DdeI	CTNAG	3 cut(s)	174, 493, 582
DpnI	GATC	1 cut(s)	362
DpnII	GATC	1 cut(s)	360
Eco130I	CCWWGG	2 cut(s)	56, 382
Eco24I	GRGCYC	2 cut(s)	65, 130
Eco47I	GGWCC	1 cut(s)	136
Eco88I	CYCGRG	2 cut(s)	129, 525
EcoO109I	RGGNCCY	2 cut(s)	136, 194
EcoRII	CCWGG	1 cut(s)	452
EcoT14I	CCWWGG	2 cut(s)	56, 382
EcoT38I	GRGCYC	2 cut(s)	65, 130
ErhI	CCWWGG	2 cut(s)	56, 382
FaeI	CATG	5 cut(s)	52, 60, 224, 386, 422
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	5 cut(s)	48, 56, 220, 382, 418
Fnu4HI	GCNGC	1 cut(s)	540
FokI	GGATG	3 cut(s)	122, 281, 335
FriOI	GRGCYC	2 cut(s)	65, 130
Fsp4HI	GCNGC	1 cut(s)	540
GluI	GCNGC	1 cut(s)	540
GsuI	CTGGAG	2 cut(s)	49, 475
HaeIII	GGCC	3 cut(s)	196, 428, 433
HapII	CCGG	1 cut(s)	430
HgaI	GACGC	1 cut(s)	494
Hin1II	CATG	5 cut(s)	52, 60, 224, 386, 422
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	430
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	3 cut(s)	32, 131, 364
HpyAV	CCTTC	1 cut(s)	338
HpyCH4III	ACNGT	2 cut(s)	262, 463
HpyCH4V	TGCA	4 cut(s)	142, 422, 450, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	312, 419, 456
HpyF3I	CTNAG	3 cut(s)	174, 493, 582
Hsp92II	CATG	5 cut(s)	52, 60, 224, 386, 422
Kzo9I	GATC	1 cut(s)	360
LmnI	GCTCC	3 cut(s)	52, 68, 456
Lsp1109I	GCAGC	1 cut(s)	526
LweI	GCATC	3 cut(s)	100, 196, 313
MaeIII	GTNAC	2 cut(s)	364, 463
MalI	GATC	1 cut(s)	362
MboI	GATC	1 cut(s)	360
MboII	GAAGA	2 cut(s)	35, 361
MhlI	GDGCHC	3 cut(s)	65, 130, 461
MluCI	AATT	2 cut(s)	317, 477
MnlI	CCTC	6 cut(s)	100, 127, 259, 351, 541, 577
MspI	CCGG	1 cut(s)	430
MspR9I	CCNGG	2 cut(s)	430, 454
MvaI	CCWGG	1 cut(s)	454
MwoI	GCNNNNNNNGC	3 cut(s)	312, 419, 456
NciI	CCSGG	1 cut(s)	430
NcoI	CCATGG	2 cut(s)	56, 382
NdeII	GATC	1 cut(s)	360
NlaIII	CATG	5 cut(s)	52, 60, 224, 386, 422
NlaIV	GGNNCC	2 cut(s)	54, 64
NmuCI	GTSAC	1 cut(s)	364
NspI	RCATGY	1 cut(s)	422
PaeR7I	CTCGAG	1 cut(s)	525
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	541
PpuMI	RGGWCCY	1 cut(s)	136
PsiI	TTATAA	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	2 cut(s)	54, 64
PspPI	GGNCC	3 cut(s)	136, 194, 427
PspPPI	RGGWCCY	1 cut(s)	136
PspXI	VCTCGAGB	1 cut(s)	525
PsrI	GAACNNNNNNTAC	2 cut(s)	505, 537
PstNI	CAGNNNCTG	1 cut(s)	260
SatI	GCNGC	1 cut(s)	540
Sau3AI	GATC	1 cut(s)	360
Sau96I	GGNCC	3 cut(s)	136, 194, 427
ScrFI	CCNGG	2 cut(s)	430, 454
SduI	GDGCHC	3 cut(s)	65, 130, 461
SetI	ASST	8 cut(s)	71, 141, 162, 175, 182, 455, 499, 552
SfaNI	GCATC	3 cut(s)	100, 196, 313
Sfr274I	CTCGAG	1 cut(s)	525
SinI	GGWCC	1 cut(s)	136
SlaI	CTCGAG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	525
SmoI	CTYRAG	1 cut(s)	525
Sse9I	AATT	2 cut(s)	317, 477
SspI	AATATT	1 cut(s)	15
StyD4I	CCNGG	2 cut(s)	428, 452
StyI	CCWWGG	2 cut(s)	56, 382
TaaI	ACNGT	2 cut(s)	262, 463
TaqI	TCGA	2 cut(s)	438, 526
TasI	AATT	2 cut(s)	317, 477
TfiI	GAWTC	1 cut(s)	28
TscAI	CASTG	1 cut(s)	602
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	2 cut(s)	201, 357
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	602
VpaK11BI	GGWCC	1 cut(s)	136
XceI	RCATGY	1 cut(s)	422
XhoI	CTCGAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.