Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008172

Physical Location & Seq

Genomic Coordinates Forward (+)

65399594 .. 65402930

Gene Structure 3337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G037830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAAAAGCGGAAAATCAAACAAAAAGGAAAAGAAGAATATCAAGTTATCAACCATCATTATTCGGTTCAAAATTTCAAATTCCGGTATAATTTCTATCCTGTGTTATAGCTCAAGTGACATTATCAAACTTCTATATAGATTGTATTTAAATTCTATAAGAGAAATAAGGAAAAAATGGGATGAACAAAACCAAGAAATTGCAAAGGCTGTTAAGCATCTTCATGAATTTGACCAGTATGGCGTTTTCGGCAAATTGGATGCCTGTAATGTGTATGATGAAGGGAAGATATTGAGGATCGTGACAGATTGCTCTCCCCATGGCACACATGTTGCTGGCATTGAGACTGCTTTACATGCAAAGGAGGCCCGGCCTGTCGAATGGAGTTGCACCTGGAGCACAGTTACATATTGTAAAATTGGGGACGCACGCTTAGGTTCAATAGAGACAAGAACTGGGCTTACTCGAGTTTTGATTGCTGCTGTGGAGGCTGTGAACAAGCATCGTCTGGTATTTGTGAGTAATGCTGGCAATAGTGGTCCGGCATTGAGCACTGTTGGGCACCTTGGTACTACATCGATCAAGCAATATAGGAGTGGTGCACATGTCTCTCCTACAATGGCTGCTGGTGCTCATTGTGTAGATGAAGCCCCTGGTGAAGGGTTTGAATACACTTGGTCTAGCCGAGGACCAACTGCTGCCGATGGAGATCTTGGTGTCAAGTGTCTGTATAAGTGCTCGGCGCAGCTGTTGCTCCTGTTCCTAGATGGACTCTCCAACGACAGATGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

264

Amino Acids

28.92

Weight (kDa)

8.98

Isoelectric Point (pI)

23.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378641 RchiOBHm_Chr1g0378651
rosa_laevigata	RLG00000026415
rosa_multiflora	Rmu_sc0002395.1_g000017 Rmu_sc0013199.1_g000009
rosa_roxburghii	Rroxscaffold_3G00228460 Rroxscaffold_4G00278940 Rroxscaffold_4G00278950 Rroxscaffold_5G00358580
rosa_samantha	Rh1AG431900 Rh1AG432000 Rh1AG432600 Rh1AG432700 Rh1BG390300 Rh1BG390500 Rh1BG390700 Rh1BG390800 Rh1CG403400 Rh1CG403500 Rh1DG421400 Rh1DG421600 Rh1DG421800 Rh1DG421900
rosa_wichuraiana	Rw1G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	561
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	305
AcsI	RAATTY	4 cut(s)	72, 79, 151, 227
AfaI	GTAC	1 cut(s)	571
AfiI	CCNNNNNNNGG	1 cut(s)	659
AflIII	ACRYGT	2 cut(s)	328, 604
AgsI	TTSAA	4 cut(s)	70, 78, 441, 668
AjnI	CCWGG	2 cut(s)	392, 652
AluBI	AGCT	2 cut(s)	111, 748
AluI	AGCT	2 cut(s)	111, 748
Alw21I	GWGCWC	5 cut(s)	401, 554, 604, 634, 740
Alw26I	GTCTC	3 cut(s)	338, 440, 613
Alw44I	GTGCAC	1 cut(s)	600
AlwI	GGATC	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	465
AoxI	GGCC	2 cut(s)	366, 371
ApaLI	GTGCAC	1 cut(s)	600
ApeKI	GCWGC	4 cut(s)	479, 623, 698, 745
ApoI	RAATTY	4 cut(s)	72, 79, 151, 227
AspLEI	GCGC	1 cut(s)	745
AspS9I	GGNCC	3 cut(s)	367, 539, 689
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	668
AvaI	CYCGRG	1 cut(s)	465
AvaII	GGWCC	2 cut(s)	539, 689
BaeGI	GKGCMC	2 cut(s)	564, 604
BanI	GGYRCC	1 cut(s)	561
Bbv12I	GWGCWC	5 cut(s)	401, 554, 604, 634, 740
BbvI	GCAGC	4 cut(s)	466, 610, 685, 757
BccI	CCATC	3 cut(s)	62, 698, 761
BciT130I	CCWGG	2 cut(s)	394, 654
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	3 cut(s)	338, 440, 613
BfaI	CTAG	2 cut(s)	681, 764
BglII	AGATCT	1 cut(s)	709
BisI	GCNGC	4 cut(s)	480, 624, 699, 746
BlsI	GCNGC	4 cut(s)	481, 625, 700, 747
Bme1390I	CCNGG	3 cut(s)	370, 394, 654
Bme18I	GGWCC	2 cut(s)	539, 689
BmeT110I	CYCGRG	1 cut(s)	465
BmgT120I	GGNCC	3 cut(s)	367, 539, 689
BmiI	GGNNCC	1 cut(s)	563
BmrFI	CCNGG	3 cut(s)	370, 394, 654
BmrI	ACTGGG	1 cut(s)	465
BmsI	GCATC	4 cut(s)	226, 250, 511, 776
BmuI	ACTGGG	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	415
Bpu10I	CCTNAGC	1 cut(s)	433
BpuEI	CTTGAG	1 cut(s)	97
BpuMI	CCSGG	1 cut(s)	370
Bsa29I	ATCGAT	1 cut(s)	578
BsaBI	GATNNNNATC	1 cut(s)	708
BsaJI	CCNNGG	4 cut(s)	319, 565, 652, 685
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	1 cut(s)	659
Bse1I	ACTGG	2 cut(s)	235, 460
Bse8I	GATNNNNATC	1 cut(s)	708
BseBI	CCWGG	2 cut(s)	394, 654
BseCI	ATCGAT	1 cut(s)	578
BseDI	CCNNGG	4 cut(s)	319, 565, 652, 685
BseGI	GGATG	2 cut(s)	187, 265
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	1 cut(s)	659
BseNI	ACTGG	2 cut(s)	235, 460
BseSI	GKGCMC	2 cut(s)	564, 604
BseXI	GCAGC	4 cut(s)	466, 610, 685, 757
BshFI	GGCC	2 cut(s)	368, 373
BshNI	GGYRCC	1 cut(s)	561
BshVI	ATCGAT	1 cut(s)	578
BsiHKAI	GWGCWC	5 cut(s)	401, 554, 604, 634, 740
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	3 cut(s)	84, 370, 542
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	659
BsmAI	GTCTC	3 cut(s)	338, 440, 613
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	368, 373
BsoBI	CYCGRG	1 cut(s)	465
Bsp1286I	GDGCHC	6 cut(s)	401, 554, 564, 604, 634, 740
Bsp143I	GATC	3 cut(s)	297, 579, 709
Bsp19I	CCATGG	1 cut(s)	319
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	2 cut(s)	368, 373
BspDI	ATCGAT	1 cut(s)	578
BspHI	TCATGA	2 cut(s)	223, 791
BspLI	GGNNCC	1 cut(s)	563
BspPI	GGATC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	235, 460
BssECI	CCNNGG	4 cut(s)	319, 565, 652, 685
BssMI	GATC	3 cut(s)	297, 579, 709
BssT1I	CCWWGG	2 cut(s)	319, 565
Bst2UI	CCWGG	2 cut(s)	394, 654
Bst4CI	ACNGT	2 cut(s)	403, 556
BstAPI	GCANNNNNTGC	1 cut(s)	751
BstC8I	GCNNGC	3 cut(s)	337, 430, 529
BstDEI	CTNAG	1 cut(s)	433
BstDSI	CCRYGG	1 cut(s)	319
BstENI	CCTNNNNNAGG	1 cut(s)	657
BstF5I	GGATG	2 cut(s)	187, 265
BstHHI	GCGC	1 cut(s)	745
BstKTI	GATC	3 cut(s)	300, 582, 712
BstMAI	GTCTC	3 cut(s)	338, 440, 613
BstMBI	GATC	3 cut(s)	297, 579, 709
BstMWI	GCNNNNNNNGC	7 cut(s)	249, 356, 365, 396, 488, 629, 751
BstNI	CCWGG	2 cut(s)	394, 654
BstNSI	RCATGY	3 cut(s)	332, 359, 608
BstSCI	CCNGG	3 cut(s)	368, 392, 652
BstSLI	GKGCMC	2 cut(s)	564, 604
BstV1I	GCAGC	4 cut(s)	466, 610, 685, 757
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
Bsu15I	ATCGAT	1 cut(s)	578
BsuRI	GGCC	2 cut(s)	368, 373
BsuTUI	ATCGAT	1 cut(s)	578
BtgI	CCRYGG	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	187, 265
BtsIMutI	CAGTG	1 cut(s)	552
Cac8I	GCNNGC	3 cut(s)	337, 430, 529
CciI	TCATGA	2 cut(s)	223, 791
CfoI	GCGC	1 cut(s)	745
Cfr13I	GGNCC	3 cut(s)	367, 539, 689
ClaI	ATCGAT	1 cut(s)	578
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	1 cut(s)	570
CviAII	CATG	6 cut(s)	224, 320, 329, 356, 605, 792
CviQI	GTAC	1 cut(s)	570
DdeI	CTNAG	1 cut(s)	433
DpnI	GATC	3 cut(s)	299, 581, 711
DpnII	GATC	3 cut(s)	297, 579, 709
DraI	TTTAAA	1 cut(s)	150
Eco130I	CCWWGG	2 cut(s)	319, 565
Eco47I	GGWCC	2 cut(s)	539, 689
Eco88I	CYCGRG	1 cut(s)	465
EcoNI	CCTNNNNNAGG	1 cut(s)	657
EcoRII	CCWGG	2 cut(s)	392, 652
EcoT14I	CCWWGG	2 cut(s)	319, 565
ErhI	CCWWGG	2 cut(s)	319, 565
FaeI	CATG	6 cut(s)	227, 323, 332, 359, 608, 795
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	6 cut(s)	223, 319, 328, 355, 604, 791
Fnu4HI	GCNGC	4 cut(s)	480, 624, 699, 746
FokI	GGATG	2 cut(s)	194, 272
Fsp4HI	GCNGC	4 cut(s)	480, 624, 699, 746
FspBI	CTAG	2 cut(s)	681, 764
GlaI	GCGC	1 cut(s)	744
GluI	GCNGC	4 cut(s)	480, 624, 699, 746
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	2 cut(s)	368, 373
HapII	CCGG	3 cut(s)	84, 370, 542
HgaI	GACGC	1 cut(s)	434
HhaI	GCGC	1 cut(s)	745
Hin1II	CATG	6 cut(s)	227, 323, 332, 359, 608, 795
Hin6I	GCGC	1 cut(s)	743
HinP1I	GCGC	1 cut(s)	743
HinfI	GANTC	1 cut(s)	771
HpaII	CCGG	3 cut(s)	84, 370, 542
HphI	GGTGA	1 cut(s)	668
Hpy166II	GTNNAC	2 cut(s)	496, 602
Hpy188III	TCNNGA	3 cut(s)	224, 301, 792
Hpy8I	GTNNAC	2 cut(s)	496, 602
HpyAV	CCTTC	2 cut(s)	275, 653
HpyCH4III	ACNGT	2 cut(s)	403, 556
HpyCH4V	TGCA	4 cut(s)	203, 359, 390, 602
HpyF10VI	GCNNNNNNNGC	7 cut(s)	249, 356, 365, 396, 488, 629, 751
HpyF3I	CTNAG	1 cut(s)	433
Hsp92II	CATG	6 cut(s)	227, 323, 332, 359, 608, 795
HspAI	GCGC	1 cut(s)	743
Kzo9I	GATC	3 cut(s)	297, 579, 709
LmnI	GCTCC	2 cut(s)	396, 759
Lsp1109I	GCAGC	4 cut(s)	466, 610, 685, 757
LweI	GCATC	4 cut(s)	226, 250, 511, 776
MaeI	CTAG	2 cut(s)	681, 764
MaeIII	GTNAC	3 cut(s)	116, 301, 403
MalI	GATC	3 cut(s)	299, 581, 711
MboI	GATC	3 cut(s)	297, 579, 709
MboII	GAAGA	3 cut(s)	46, 212, 298
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	6 cut(s)	401, 554, 564, 604, 634, 740
MluCI	AATT	8 cut(s)	72, 79, 90, 151, 198, 227, 254, 417
MlyI	GAGTC	1 cut(s)	765
MnlI	CCTC	4 cut(s)	288, 358, 481, 680
MseI	TTAA	2 cut(s)	149, 213
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	748
MspI	CCGG	3 cut(s)	84, 370, 542
MspR9I	CCNGG	3 cut(s)	370, 394, 654
MvaI	CCWGG	2 cut(s)	394, 654
MwoI	GCNNNNNNNGC	7 cut(s)	249, 356, 365, 396, 488, 629, 751
NciI	CCSGG	1 cut(s)	370
NcoI	CCATGG	1 cut(s)	319
NdeII	GATC	3 cut(s)	297, 579, 709
NlaIII	CATG	6 cut(s)	227, 323, 332, 359, 608, 795
NlaIV	GGNNCC	1 cut(s)	563
NmeAIII	GCCGAG	2 cut(s)	710, 719
NmuCI	GTSAC	2 cut(s)	116, 301
NspI	RCATGY	3 cut(s)	332, 359, 608
PaeR7I	CTCGAG	1 cut(s)	465
PagI	TCATGA	2 cut(s)	223, 791
PciI	ACATGT	2 cut(s)	328, 604
PkrI	GCNGC	4 cut(s)	481, 625, 700, 747
PleI	GAGTC	1 cut(s)	765
PpsI	GAGTC	1 cut(s)	765
PscI	ACATGT	2 cut(s)	328, 604
Psp6I	CCWGG	2 cut(s)	392, 652
PspGI	CCWGG	2 cut(s)	392, 652
PspN4I	GGNNCC	1 cut(s)	563
PspPI	GGNCC	3 cut(s)	367, 539, 689
PspXI	VCTCGAGB	1 cut(s)	465
PsrI	GAACNNNNNNTAC	2 cut(s)	445, 477
PsuI	RGATCY	1 cut(s)	709
PvuII	CAGCTG	1 cut(s)	748
RsaI	GTAC	1 cut(s)	571
RsaNI	GTAC	1 cut(s)	570
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	149, 213
SatI	GCNGC	4 cut(s)	480, 624, 699, 746
Sau3AI	GATC	3 cut(s)	297, 579, 709
Sau96I	GGNCC	3 cut(s)	367, 539, 689
SchI	GAGTC	1 cut(s)	765
ScrFI	CCNGG	3 cut(s)	370, 394, 654
SduI	GDGCHC	6 cut(s)	401, 554, 564, 604, 634, 740
SetI	ASST	5 cut(s)	113, 395, 439, 567, 750
SfaNI	GCATC	4 cut(s)	226, 250, 511, 776
Sfr274I	CTCGAG	1 cut(s)	465
SinI	GGWCC	2 cut(s)	539, 689
SlaI	CTCGAG	1 cut(s)	465
SmiI	ATTTAAAT	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	2 cut(s)	112, 465
SmoI	CTYRAG	2 cut(s)	112, 465
Sse9I	AATT	8 cut(s)	72, 79, 90, 151, 198, 227, 254, 417
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	2 cut(s)	681, 764
StyD4I	CCNGG	3 cut(s)	368, 392, 652
StyI	CCWWGG	2 cut(s)	319, 565
SwaI	ATTTAAAT	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	403, 556
TaqI	TCGA	3 cut(s)	378, 466, 578
TasI	AATT	8 cut(s)	72, 79, 90, 151, 198, 227, 254, 417
Tru1I	TTAA	2 cut(s)	149, 213
Tru9I	TTAA	2 cut(s)	149, 213
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	2 cut(s)	116, 301
TseI	GCWGC	4 cut(s)	479, 623, 698, 745
Tsp45I	GTSAC	2 cut(s)	116, 301
TspDTI	ATGAA	6 cut(s)	17, 198, 212, 240, 294, 660
TspRI	CASTG	1 cut(s)	559
VneI	GTGCAC	1 cut(s)	600
VpaK11BI	GGWCC	2 cut(s)	539, 689
XagI	CCTNNNNNAGG	1 cut(s)	657
XapI	RAATTY	4 cut(s)	72, 79, 151, 227
XceI	RCATGY	3 cut(s)	332, 359, 608
XhoI	CTCGAG	1 cut(s)	465
XspI	CTAG	2 cut(s)	681, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.