Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008172

Physical Location & Seq

Genomic Coordinates Forward (+)

65808879 .. 65809255

Gene Structure 377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG432000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAGCTATGTAGAATCAGCGTTACTGCCGGACTATGGGTGCTTTGTTGACTTCGTTAATGAAGCTGTGAACAAGCATCGTCTGGTATTTGTGAGTAGTGCTGGCATTACTGGTCCGGCATTGAGCACTGTTGGGCACCTCGGTACTACATCGATCAAGAATTATAGGAGTGGCGCATGTGTCTCTCCTGCAATGGCTGCTGGTGCTCATTGTGTAGCTGAAGCCCCTGGTGAAGAGCTTGAATACACTTGGTATATTAACTTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

89

Amino Acids

9.45

Weight (kDa)

5.08

Isoelectric Point (pI)

29.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378641 RchiOBHm_Chr1g0378651
rosa_laevigata	RLG00000026415
rosa_multiflora	Rmu_sc0002395.1_g000017 Rmu_sc0013199.1_g000009
rosa_roxburghii	Rroxscaffold_3G00228460 Rroxscaffold_4G00278940 Rroxscaffold_4G00278950 Rroxscaffold_5G00358580
rosa_samantha	Rh1AG431900 Rh1AG432000 Rh1AG432600 Rh1AG432700 Rh1BG390300 Rh1BG390500 Rh1BG390700 Rh1BG390800 Rh1CG403400 Rh1CG403500 Rh1DG421400 Rh1DG421600 Rh1DG421800 Rh1DG421900
rosa_wichuraiana	Rw1G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	135
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	4 cut(s)	6, 65, 218, 238
AluI	AGCT	4 cut(s)	6, 65, 218, 238
Alw21I	GWGCWC	2 cut(s)	128, 208
Alw26I	GTCTC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	135
Bbv12I	GWGCWC	2 cut(s)	128, 208
BbvI	GCAGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	187
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	85
Bsa29I	ATCGAT	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	139, 226
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	139, 226
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMI	GCAATG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	184
BshNI	GGYRCC	1 cut(s)	135
BshVI	ATCGAT	1 cut(s)	152
BsiHKAI	GWGCWC	2 cut(s)	128, 208
BsiSI	CCGG	2 cut(s)	29, 116
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	187
Bsp1286I	GDGCHC	3 cut(s)	128, 138, 208
Bsp143I	GATC	1 cut(s)	153
BspDI	ATCGAT	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	139, 226
BssMI	GATC	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 203
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	226
BstSLI	GKGCMC	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	184
Bsu15I	ATCGAT	1 cut(s)	152
BsuTUI	ATCGAT	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	113
ClaI	ATCGAT	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	1 cut(s)	177
CviJI	RGCY	6 cut(s)	6, 65, 197, 218, 224, 238
CviKI_1	RGCY	6 cut(s)	6, 65, 197, 218, 224, 238
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	226
FaeI	CATG	1 cut(s)	180
FaiI	YATR	5 cut(s)	9, 36, 165, 178, 255
FatI	CATG	1 cut(s)	176
Fnu4HI	GCNGC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	198
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	198
HapII	CCGG	2 cut(s)	29, 116
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	1 cut(s)	180
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	2 cut(s)	29, 116
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	49, 70
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	2 cut(s)	49, 70
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 203
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	180
HspAI	GCGC	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	153
LguI	GCTCTTC	1 cut(s)	228
LpnPI	CCDG	9 cut(s)	42, 68, 87, 96, 129, 186, 201, 213, 240
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	85
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	1 cut(s)	245
MhlI	GDGCHC	3 cut(s)	128, 138, 208
MluCI	AATT	1 cut(s)	160
MnlI	CCTC	1 cut(s)	149
MseI	TTAA	2 cut(s)	57, 258
MspI	CCGG	2 cut(s)	29, 116
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	197, 203
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	1 cut(s)	180
NlaIV	GGNNCC	1 cut(s)	137
NspI	RCATGY	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	57, 258
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	3 cut(s)	128, 138, 208
SetI	ASST	5 cut(s)	8, 67, 141, 220, 240
SfaNI	GCATC	1 cut(s)	85
SinI	GGWCC	1 cut(s)	113
Sse9I	AATT	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	152
TasI	AATT	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	2 cut(s)	57, 258
Tru9I	TTAA	2 cut(s)	57, 258
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	113
XceI	RCATGY	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.