Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008172

Physical Location & Seq

Genomic Coordinates Reverse (-)

2900843 .. 2901379

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026415

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGAGACGGGAACTGGGCTGACTCGAGCTTGGATTGCTGCTGTGGAGCATAAATGTGATCTGATCAACATGAGTTATGGAGAATCAGCGTTACTACCGGACTATGGGTGCTTTGTTGACCTCGTTAATGAAGCTGTGAACAAGCATCGTCTGGTATTTGTGAGTAATGCTGGCGATAGTGGTCCGGCATTGAGCACTGTTGGGCACCTTGGTACTACATCGATCAAGCATTATAGGAGTGGTGCACATGTCTCTCCTGCAATGGCTGCTGGTGCTCATAGTGTAGATGAAGCCCCTGGTGAAGGGTTTGAATACACTTGGTATATTAACTTTCTTAGTCACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

116

Amino Acids

12.34

Weight (kDa)

5.5

Isoelectric Point (pI)

22.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378641 RchiOBHm_Chr1g0378651
rosa_laevigata	RLG00000026415
rosa_multiflora	Rmu_sc0002395.1_g000017 Rmu_sc0013199.1_g000009
rosa_roxburghii	Rroxscaffold_3G00228460 Rroxscaffold_4G00278940 Rroxscaffold_4G00278950 Rroxscaffold_5G00358580
rosa_samantha	Rh1AG431900 Rh1AG432000 Rh1AG432600 Rh1AG432700 Rh1BG390300 Rh1BG390500 Rh1BG390700 Rh1BG390800 Rh1CG403400 Rh1CG403500 Rh1DG421400 Rh1DG421600 Rh1DG421800 Rh1DG421900
rosa_wichuraiana	Rw1G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	2 cut(s)	104, 302
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	311
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	2 cut(s)	29, 134
AluI	AGCT	2 cut(s)	29, 134
Alw21I	GWGCWC	3 cut(s)	197, 247, 277
Alw26I	GTCTC	1 cut(s)	256
Alw44I	GTGCAC	1 cut(s)	243
Ama87I	CYCGRG	1 cut(s)	24
ApaLI	GTGCAC	1 cut(s)	243
ApeKI	GCWGC	2 cut(s)	38, 266
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	311
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	182
BaeGI	GKGCMC	2 cut(s)	207, 247
BanI	GGYRCC	1 cut(s)	204
Bbv12I	GWGCWC	3 cut(s)	197, 247, 277
BbvI	GCAGC	2 cut(s)	25, 253
BciT130I	CCWGG	1 cut(s)	297
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	256
BisI	GCNGC	2 cut(s)	39, 267
BlsI	GCNGC	2 cut(s)	40, 268
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	297
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	24
Bsa29I	ATCGAT	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	208, 295
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 302
Bse1I	ACTGG	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	297
BseCI	ATCGAT	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	208, 295
BseLI	CCNNNNNNNGG	2 cut(s)	104, 302
BseMI	GCAATG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	19
BseSI	GKGCMC	2 cut(s)	207, 247
BseXI	GCAGC	2 cut(s)	25, 253
BshNI	GGYRCC	1 cut(s)	204
BshVI	ATCGAT	1 cut(s)	221
BsiHKAI	GWGCWC	3 cut(s)	197, 247, 277
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	2 cut(s)	98, 185
BslI	CCNNNNNNNGG	2 cut(s)	104, 302
BsmAI	GTCTC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	24
Bsp1286I	GDGCHC	4 cut(s)	197, 207, 247, 277
Bsp143I	GATC	3 cut(s)	58, 63, 222
BspDI	ATCGAT	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	208, 295
BssMI	GATC	3 cut(s)	58, 63, 222
BssT1I	CCWWGG	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	199
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	335
BstENI	CCTNNNNNAGG	1 cut(s)	300
BstKTI	GATC	3 cut(s)	61, 66, 225
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	3 cut(s)	58, 63, 222
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 266, 272
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	295
BstSLI	GKGCMC	2 cut(s)	207, 247
BstV1I	GCAGC	2 cut(s)	25, 253
Bsu15I	ATCGAT	1 cut(s)	221
BsuTUI	ATCGAT	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	182
ClaI	ATCGAT	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	2 cut(s)	70, 248
CviJI	RGCY	5 cut(s)	19, 29, 134, 266, 293
CviKI_1	RGCY	5 cut(s)	19, 29, 134, 266, 293
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	3 cut(s)	60, 65, 224
DpnII	GATC	3 cut(s)	58, 63, 222
Eco130I	CCWWGG	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	24
EcoNI	CCTNNNNNAGG	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	2 cut(s)	73, 251
FaiI	YATR	8 cut(s)	51, 71, 78, 105, 234, 249, 279, 324
FatI	CATG	2 cut(s)	69, 247
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	39, 267
Fsp4HI	GCNGC	2 cut(s)	39, 267
GluI	GCNGC	2 cut(s)	39, 267
HapII	CCGG	2 cut(s)	98, 185
Hin1II	CATG	2 cut(s)	73, 251
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	22, 83
HpaII	CCGG	2 cut(s)	98, 185
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	3 cut(s)	118, 139, 245
Hpy188I	TCNGA	1 cut(s)	63
Hpy8I	GTNNAC	3 cut(s)	118, 139, 245
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	245, 260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 266, 272
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	2 cut(s)	73, 251
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	58, 63, 222
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	8 cut(s)	111, 137, 156, 198, 255, 270, 282, 309
Lsp1109I	GCAGC	2 cut(s)	25, 253
LweI	GCATC	1 cut(s)	154
MaeIII	GTNAC	2 cut(s)	90, 338
MalI	GATC	3 cut(s)	60, 65, 224
MboI	GATC	3 cut(s)	58, 63, 222
MhlI	GDGCHC	4 cut(s)	197, 207, 247, 277
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	1 cut(s)	131
MseI	TTAA	3 cut(s)	126, 327, 346
MslI	CAYNNNNRTG	1 cut(s)	54
MspI	CCGG	2 cut(s)	98, 185
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	35, 266, 272
NdeII	GATC	3 cut(s)	58, 63, 222
NlaIII	CATG	2 cut(s)	73, 251
NlaIV	GGNNCC	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	338
NspI	RCATGY	1 cut(s)	251
PaeR7I	CTCGAG	1 cut(s)	24
PciI	ACATGT	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	40, 268
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PscI	ACATGT	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	182
PspXI	VCTCGAGB	1 cut(s)	24
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	3 cut(s)	126, 327, 346
SatI	GCNGC	2 cut(s)	39, 267
Sau3AI	GATC	3 cut(s)	58, 63, 222
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	4 cut(s)	197, 207, 247, 277
SetI	ASST	4 cut(s)	31, 123, 136, 210
SfaNI	GCATC	1 cut(s)	154
Sfr274I	CTCGAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	25, 221
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	3 cut(s)	126, 327, 346
Tru9I	TTAA	3 cut(s)	126, 327, 346
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	2 cut(s)	38, 266
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	2 cut(s)	144, 303
TspRI	CASTG	1 cut(s)	202
VneI	GTGCAC	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	182
XagI	CCTNNNNNAGG	1 cut(s)	300
XceI	RCATGY	1 cut(s)	251
XhoI	CTCGAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.