Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008172

Physical Location & Seq

Genomic Coordinates Forward (+)

1881581 .. 1890180

Gene Structure 8600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00278950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCCGCTTGTCCACGAAATCATTTCCGAAAAGTCCTCGGAAATTAATTTGAATTTCCGGGGTATTACATGGGACAAATTAAGATGTGAGATACTCTTTTTGTATGTGGAGAACTTGAGACTGTATGCTGAAGAGGCCCGGCCTGTTGAATGGAGTTGCACCTGGAGCACAGTTACATATTGTAAAATTGGGGACGCACGCTTAGGTTCAATAGAGACAAGAACTGGGCTGACTCGAGTTTTGATTGCTGCTGTGGATGTTTCAAAATCTCTGTTTTGGACATACCAATCTGAGGGTATATATCAGTGTATTGATGGCTGTAATACAATGTTTTTGCACCATAAATGTGATCCGATCAACATGAGTTATGGAGAATCAGCGTTACTACCGGACTATGGGTGCTTTGTTGACCTCGTTAATGAAAAAGGTAGAGGAGGATCATTAAGCAAGTCCATTACAAATGGATGGAGTGAGTTAAAGCAGAAAGCAACCCTGCAGCCTAGGGTGACAGATGAAAGGGAAATGGCCCTGGTATTCAAAAGTGCGAGTGGCCAGGAACTTGAAGGAGAAATCTCCCGACTCCAAAACTTGAAATTGAATTACCAAGACAAGAAGGCGAATCGTCTGGCGATGAGTGGCGCTATAGTCGTCTCTCGACTTTCGGGAGGCTCGAGGACAAAACAAAGCATGTTTAAGTATAAGCAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

236

Amino Acids

26.7

Weight (kDa)

8.41

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378641 RchiOBHm_Chr1g0378651
rosa_laevigata	RLG00000026415
rosa_multiflora	Rmu_sc0002395.1_g000017 Rmu_sc0013199.1_g000009
rosa_roxburghii	Rroxscaffold_3G00228460 Rroxscaffold_4G00278940 Rroxscaffold_4G00278950 Rroxscaffold_5G00358580
rosa_samantha	Rh1AG431900 Rh1AG432000 Rh1AG432600 Rh1AG432700 Rh1BG390300 Rh1BG390500 Rh1BG390700 Rh1BG390800 Rh1CG403400 Rh1CG403500 Rh1DG421400 Rh1DG421600 Rh1DG421800 Rh1DG421900
rosa_wichuraiana	Rw1G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	344, 445
AcoI	YGGCCR	1 cut(s)	550
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	292, 395
AgsI	TTSAA	8 cut(s)	52, 149, 210, 264, 538, 563, 592, 598
AjnI	CCWGG	3 cut(s)	161, 528, 552
Alw21I	GWGCWC	1 cut(s)	170
Alw26I	GTCTC	3 cut(s)	112, 209, 655
AlwI	GGATC	2 cut(s)	344, 445
Ama87I	CYCGRG	2 cut(s)	234, 670
AoxI	GGCC	4 cut(s)	135, 140, 525, 550
ApeKI	GCWGC	2 cut(s)	248, 496
ApoI	RAATTY	1 cut(s)	52
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
AseI	ATTAAT	1 cut(s)	45
AspA2I	CCTAGG	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	641
AspS9I	GGNCC	2 cut(s)	136, 526
AsuC2I	CCSGG	2 cut(s)	59, 139
AsuHPI	GGTGA	1 cut(s)	517
AvaI	CYCGRG	2 cut(s)	234, 670
AvrII	CCTAGG	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	235, 508
BccI	CCATC	2 cut(s)	308, 459
BciT130I	CCWGG	3 cut(s)	163, 530, 554
BcnI	CCSGG	2 cut(s)	59, 139
BcoDI	GTCTC	3 cut(s)	112, 209, 655
BfaI	CTAG	1 cut(s)	501
BfmI	CTRYAG	2 cut(s)	494, 642
BfoI	RGCGCY	1 cut(s)	642
BisI	GCNGC	3 cut(s)	5, 249, 497
BlnI	CCTAGG	1 cut(s)	500
BlsI	GCNGC	3 cut(s)	6, 250, 498
Bme1390I	CCNGG	5 cut(s)	59, 139, 163, 530, 554
BmeT110I	CYCGRG	2 cut(s)	234, 670
BmgT120I	GGNCC	2 cut(s)	136, 526
BmrFI	CCNGG	5 cut(s)	59, 139, 163, 530, 554
BmrI	ACTGGG	1 cut(s)	234
BmuI	ACTGGG	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	184
Bpu10I	CCTNAGC	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	136
BpuMI	CCSGG	2 cut(s)	59, 139
BsaJI	CCNNGG	4 cut(s)	36, 58, 500, 528
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 395
Bse1I	ACTGG	1 cut(s)	229
BseBI	CCWGG	3 cut(s)	163, 530, 554
BseDI	CCNNGG	4 cut(s)	36, 58, 500, 528
BseGI	GGATG	2 cut(s)	262, 470
BseLI	CCNNNNNNNGG	2 cut(s)	292, 395
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	235, 508
BshFI	GGCC	4 cut(s)	137, 142, 527, 552
BsiHKAI	GWGCWC	1 cut(s)	170
BsiHKCI	CYCGRG	2 cut(s)	234, 670
BsiSI	CCGG	3 cut(s)	58, 139, 389
BslFI	GGGAC	2 cut(s)	86, 206
BslI	CCNNNNNNNGG	2 cut(s)	292, 395
BsmAI	GTCTC	3 cut(s)	112, 209, 655
BsmBI	CGTCTC	1 cut(s)	655
BsmFI	GGGAC	2 cut(s)	86, 206
BsnI	GGCC	4 cut(s)	137, 142, 527, 552
BsoBI	CYCGRG	2 cut(s)	234, 670
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	3 cut(s)	349, 354, 437
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	4 cut(s)	137, 142, 527, 552
BspCNI	CTCAG	1 cut(s)	283
BspMAI	CTGCAG	1 cut(s)	498
BspPI	GGATC	2 cut(s)	344, 445
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	4 cut(s)	36, 58, 500, 528
BssMI	GATC	3 cut(s)	349, 354, 437
BssT1I	CCWWGG	1 cut(s)	500
Bst2UI	CCWGG	3 cut(s)	163, 530, 554
Bst4CI	ACNGT	2 cut(s)	123, 172
Bst6I	CTCTTC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	2 cut(s)	202, 291
BstF5I	GGATG	2 cut(s)	262, 470
BstH2I	RGCGCY	1 cut(s)	642
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	3 cut(s)	352, 357, 440
BstMAI	GTCTC	3 cut(s)	112, 209, 655
BstMBI	GATC	3 cut(s)	349, 354, 437
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 165
BstNI	CCWGG	3 cut(s)	163, 530, 554
BstNSI	RCATGY	1 cut(s)	691
BstSCI	CCNGG	5 cut(s)	57, 137, 161, 528, 552
BstSFI	CTRYAG	2 cut(s)	494, 642
BstV1I	GCAGC	2 cut(s)	235, 508
BsuRI	GGCC	4 cut(s)	137, 142, 527, 552
BtgZI	GCGATG	1 cut(s)	644
BtsCI	GGATG	2 cut(s)	262, 470
BtsIMutI	CAGTG	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	199
CfoI	GCGC	1 cut(s)	641
Cfr13I	GGNCC	2 cut(s)	136, 526
CseI	GACGC	1 cut(s)	203
CviAII	CATG	3 cut(s)	69, 361, 688
CviJI	RGCY	8 cut(s)	137, 142, 229, 318, 499, 527, 552, 669
CviKI_1	RGCY	8 cut(s)	137, 142, 229, 318, 499, 527, 552, 669
DdeI	CTNAG	2 cut(s)	202, 291
DpnI	GATC	3 cut(s)	351, 356, 439
DpnII	GATC	3 cut(s)	349, 354, 437
EaeI	YGGCCR	1 cut(s)	550
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	500
Eco57I	CTGAAG	1 cut(s)	150
Eco88I	CYCGRG	2 cut(s)	234, 670
EcoRII	CCWGG	3 cut(s)	161, 528, 552
EcoT14I	CCWWGG	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	500
Esp3I	CGTCTC	1 cut(s)	655
FaeI	CATG	3 cut(s)	72, 364, 691
FaqI	GGGAC	2 cut(s)	86, 206
FatI	CATG	3 cut(s)	68, 360, 687
Fnu4HI	GCNGC	3 cut(s)	5, 249, 497
FokI	GGATG	2 cut(s)	269, 477
Fsp4HI	GCNGC	3 cut(s)	5, 249, 497
FspBI	CTAG	1 cut(s)	501
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	3 cut(s)	5, 249, 497
GsuI	CTGGAG	1 cut(s)	184
HaeII	RGCGCY	1 cut(s)	642
HaeIII	GGCC	4 cut(s)	137, 142, 527, 552
HapII	CCGG	3 cut(s)	58, 139, 389
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	641
Hin1II	CATG	3 cut(s)	72, 364, 691
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	4 cut(s)	232, 374, 579, 619
HpaII	CCGG	3 cut(s)	58, 139, 389
HphI	GGTGA	1 cut(s)	517
Hpy166II	GTNNAC	2 cut(s)	13, 409
Hpy188I	TCNGA	4 cut(s)	28, 40, 292, 354
Hpy188III	TCNNGA	3 cut(s)	576, 654, 663
Hpy8I	GTNNAC	2 cut(s)	13, 409
HpyAV	CCTTC	2 cut(s)	557, 607
HpyCH4III	ACNGT	2 cut(s)	123, 172
HpyCH4V	TGCA	3 cut(s)	159, 337, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 165
HpyF3I	CTNAG	2 cut(s)	202, 291
Hsp92II	CATG	3 cut(s)	72, 364, 691
HspAI	GCGC	1 cut(s)	639
Kzo9I	GATC	3 cut(s)	349, 354, 437
LmnI	GCTCC	1 cut(s)	165
Lsp1109I	GCAGC	2 cut(s)	235, 508
MaeI	CTAG	1 cut(s)	501
MaeIII	GTNAC	3 cut(s)	172, 381, 505
MalI	GATC	3 cut(s)	351, 356, 439
MboI	GATC	3 cut(s)	349, 354, 437
MboII	GAAGA	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	170
MlsI	TGGCCA	1 cut(s)	552
MluCI	AATT	8 cut(s)	42, 46, 52, 77, 186, 593, 598, 706
MluNI	TGGCCA	1 cut(s)	552
MlyI	GAGTC	2 cut(s)	226, 573
MnlI	CCTC	8 cut(s)	46, 127, 286, 422, 425, 428, 659, 666
Mox20I	TGGCCA	1 cut(s)	552
MscI	TGGCCA	1 cut(s)	552
MseI	TTAA	6 cut(s)	45, 80, 417, 443, 476, 693
MslI	CAYNNNNRTG	1 cut(s)	345
Msp20I	TGGCCA	1 cut(s)	552
MspI	CCGG	3 cut(s)	58, 139, 389
MspR9I	CCNGG	5 cut(s)	59, 139, 163, 530, 554
MvaI	CCWGG	3 cut(s)	163, 530, 554
MwoI	GCNNNNNNNGC	2 cut(s)	134, 165
NciI	CCSGG	2 cut(s)	59, 139
NdeII	GATC	3 cut(s)	349, 354, 437
NlaIII	CATG	3 cut(s)	72, 364, 691
NmuCI	GTSAC	1 cut(s)	505
NspI	RCATGY	1 cut(s)	691
PaeR7I	CTCGAG	2 cut(s)	234, 670
PcsI	WCGNNNNNNNCGW	1 cut(s)	668
PfeI	GAWTC	2 cut(s)	374, 619
PkrI	GCNGC	3 cut(s)	6, 250, 498
PleI	GAGTC	2 cut(s)	226, 573
PpsI	GAGTC	2 cut(s)	226, 573
PshBI	ATTAAT	1 cut(s)	45
Psp6I	CCWGG	3 cut(s)	161, 528, 552
PspGI	CCWGG	3 cut(s)	161, 528, 552
PspPI	GGNCC	2 cut(s)	136, 526
PspXI	VCTCGAGB	2 cut(s)	234, 670
PstI	CTGCAG	1 cut(s)	498
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	6 cut(s)	45, 80, 417, 443, 476, 693
SatI	GCNGC	3 cut(s)	5, 249, 497
Sau3AI	GATC	3 cut(s)	349, 354, 437
Sau96I	GGNCC	2 cut(s)	136, 526
SchI	GAGTC	2 cut(s)	226, 573
ScrFI	CCNGG	5 cut(s)	59, 139, 163, 530, 554
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	4 cut(s)	164, 208, 414, 430
SfcI	CTRYAG	2 cut(s)	494, 642
Sfr274I	CTCGAG	2 cut(s)	234, 670
SlaI	CTCGAG	2 cut(s)	234, 670
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	3 cut(s)	115, 234, 670
SmoI	CTYRAG	3 cut(s)	115, 234, 670
Sse9I	AATT	8 cut(s)	42, 46, 52, 77, 186, 593, 598, 706
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	5 cut(s)	57, 137, 161, 528, 552
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	2 cut(s)	123, 172
TaqI	TCGA	3 cut(s)	235, 655, 671
TasI	AATT	8 cut(s)	42, 46, 52, 77, 186, 593, 598, 706
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	374, 619
Tru1I	TTAA	6 cut(s)	45, 80, 417, 443, 476, 693
Tru9I	TTAA	6 cut(s)	45, 80, 417, 443, 476, 693
TscAI	CASTG	1 cut(s)	311
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	2 cut(s)	248, 496
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	2 cut(s)	435, 528
TspRI	CASTG	1 cut(s)	311
VspI	ATTAAT	1 cut(s)	45
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	1 cut(s)	691
XhoI	CTCGAG	2 cut(s)	234, 670
XmaJI	CCTAGG	1 cut(s)	500
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.