Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0008172

Physical Location & Seq

Genomic Coordinates Forward (+)

51706036 .. 51706626

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG390800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGTTATGGAGAATCAGCGTTACTACCGGACTATGGGTGCTTTGTTGACCTCGTTAATGAAGCTGTGAACAAGCATCGTCTGGTATTTGTGAGTAATGCTGGCAATAGTGGTCCGGCATTGAGCACTGTTGGGGACCTTGGTACTACATCGATCAAGCAATATAGGAGTGGTGCACATGTCTCTCCTGCAATGGCTACTGGTGCTCATTGTGTAGATGAAGCCCCTGGTGAAGGGTTTGAATACACTTGGTCTAGCCGAGGACCAACTGCTGCCGATGGAGATATTGGTGTCAGGTGTCTGTATAAGTGCTCGGCGCAGCTGTTGCTCCTGTTCCTAGATGGACTCTCCAACGACAGATGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

122

Amino Acids

12.82

Weight (kDa)

4.92

Isoelectric Point (pI)

19.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378641 RchiOBHm_Chr1g0378651
rosa_laevigata	RLG00000026415
rosa_multiflora	Rmu_sc0002395.1_g000017 Rmu_sc0013199.1_g000009
rosa_roxburghii	Rroxscaffold_3G00228460 Rroxscaffold_4G00278940 Rroxscaffold_4G00278950 Rroxscaffold_5G00358580
rosa_samantha	Rh1AG431900 Rh1AG432000 Rh1AG432600 Rh1AG432700 Rh1BG390300 Rh1BG390500 Rh1BG390700 Rh1BG390800 Rh1CG403400 Rh1CG403500 Rh1DG421400 Rh1DG421600 Rh1DG421800 Rh1DG421900
rosa_wichuraiana	Rw1G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	2 cut(s)	35, 233
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	2 cut(s)	65, 322
AluI	AGCT	2 cut(s)	65, 322
Alw21I	GWGCWC	4 cut(s)	128, 178, 208, 314
Alw26I	GTCTC	1 cut(s)	187
Alw44I	GTGCAC	1 cut(s)	174
ApaLI	GTGCAC	1 cut(s)	174
ApeKI	GCWGC	2 cut(s)	272, 319
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	3 cut(s)	113, 136, 263
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	3 cut(s)	113, 136, 263
BaeGI	GKGCMC	1 cut(s)	178
Bbv12I	GWGCWC	4 cut(s)	128, 178, 208, 314
BbvI	GCAGC	2 cut(s)	259, 331
BccI	CCATC	2 cut(s)	272, 335
BciT130I	CCWGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	2 cut(s)	255, 338
BisI	GCNGC	2 cut(s)	273, 320
BlsI	GCNGC	2 cut(s)	274, 321
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	3 cut(s)	113, 136, 263
BmgT120I	GGNCC	3 cut(s)	113, 136, 263
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	2 cut(s)	85, 350
Bsa29I	ATCGAT	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	139, 226, 259
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 233
Bse1I	ACTGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	152
BseDI	CCNNGG	3 cut(s)	139, 226, 259
BseLI	CCNNNNNNNGG	2 cut(s)	35, 233
BseMI	GCAATG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	205
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	259, 331
BshVI	ATCGAT	1 cut(s)	152
BsiHKAI	GWGCWC	4 cut(s)	128, 178, 208, 314
BsiSI	CCGG	2 cut(s)	29, 116
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	35, 233
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	149
Bsp1286I	GDGCHC	4 cut(s)	128, 178, 208, 314
Bsp143I	GATC	1 cut(s)	153
BspDI	ATCGAT	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	365
BspLI	GGNNCC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	3 cut(s)	139, 226, 259
BssMI	GATC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	130
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	103
BstENI	CCTNNNNNAGG	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 325
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	226
BstSLI	GKGCMC	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	259, 331
Bsu15I	ATCGAT	1 cut(s)	152
BsuTUI	ATCGAT	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	103
CciI	TCATGA	1 cut(s)	365
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	3 cut(s)	113, 136, 263
ClaI	ATCGAT	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	2 cut(s)	179, 366
CviJI	RGCY	5 cut(s)	65, 197, 224, 258, 322
CviKI_1	RGCY	5 cut(s)	65, 197, 224, 258, 322
CviQI	GTAC	1 cut(s)	144
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	139
Eco47I	GGWCC	3 cut(s)	113, 136, 263
EcoNI	CCTNNNNNAGG	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	2 cut(s)	182, 369
FaiI	YATR	6 cut(s)	9, 36, 165, 180, 306, 367
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	2 cut(s)	178, 365
Fnu4HI	GCNGC	2 cut(s)	273, 320
Fsp4HI	GCNGC	2 cut(s)	273, 320
FspBI	CTAG	2 cut(s)	255, 338
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	2 cut(s)	273, 320
HapII	CCGG	2 cut(s)	29, 116
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	2 cut(s)	182, 369
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	14, 345
HpaII	CCGG	2 cut(s)	29, 116
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	3 cut(s)	49, 70, 176
Hpy188III	TCNNGA	1 cut(s)	366
Hpy8I	GTNNAC	3 cut(s)	49, 70, 176
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	2 cut(s)	176, 191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 325
Hsp92II	CATG	2 cut(s)	182, 369
HspAI	GCGC	1 cut(s)	317
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	333
Lsp1109I	GCAGC	2 cut(s)	259, 331
LweI	GCATC	2 cut(s)	85, 350
MaeI	CTAG	2 cut(s)	255, 338
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MhlI	GDGCHC	4 cut(s)	128, 178, 208, 314
MlyI	GAGTC	1 cut(s)	339
MnlI	CCTC	2 cut(s)	62, 254
MseI	TTAA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	2 cut(s)	29, 116
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	203, 325
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	2 cut(s)	182, 369
NlaIV	GGNNCC	1 cut(s)	137
NmeAIII	GCCGAG	2 cut(s)	284, 293
NspI	RCATGY	1 cut(s)	182
PagI	TCATGA	1 cut(s)	365
PciI	ACATGT	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	274, 321
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
PpuMI	RGGWCCY	1 cut(s)	136
PscI	ACATGT	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	3 cut(s)	113, 136, 263
PspPPI	RGGWCCY	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	322
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	2 cut(s)	273, 320
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	3 cut(s)	113, 136, 263
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	4 cut(s)	128, 178, 208, 314
SetI	ASST	5 cut(s)	54, 67, 141, 299, 324
SfaNI	GCATC	2 cut(s)	85, 350
SinI	GGWCC	3 cut(s)	113, 136, 263
SspMI	CTAG	2 cut(s)	255, 338
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	2 cut(s)	272, 319
TspDTI	ATGAA	2 cut(s)	75, 234
TspRI	CASTG	1 cut(s)	133
VneI	GTGCAC	1 cut(s)	174
VpaK11BI	GGWCC	3 cut(s)	113, 136, 263
XagI	CCTNNNNNAGG	1 cut(s)	231
XceI	RCATGY	1 cut(s)	182
XspI	CTAG	2 cut(s)	255, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.