Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008172

Physical Location & Seq

Genomic Coordinates Forward (+)

63609805 .. 63614598

Gene Structure 4794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG421900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCTTAACTTGGTTTCTAGTGGCAACACATGTGAGAAGTATAGTGGTGGGACAAAGATGTGTGATACTCTTTTTGTACGTGGAGAACTTGAGACTGTCAACTTGGTGCGTGATGCTAGTGTTCAAAAGGAAATTTCTAACTCTGTTGGGAAACAAGCTCTTGTTCTTTCTATTGTGGAGTGCAAGGGGCTCGAGTTCCAGGCTGTGAACAAGCATCGTCTGGTATTTGTGAGTAATGCTGGCAATAGTGGTCCGGCATTGAGCACTGTTGGGGACCTTGGTACTACATCGATCAAGCAATATAGGAGTGGTGCACATGTCTCTCCTGCAATGGCTACTGGTGCTCATTGTGTAGATGAAGCCCCTGGTGAAGGGTTTGAATACACTTGGTCTAGCCGAGGACCAACTGCTGCCGATGGAGATATTGGTGTCAGGTGTCTGTATAAGTGCTCGGCGCAGCTGTTGCTCCTGTTCCTAGATGGACTCTCCAACGACAGATGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

168

Amino Acids

17.77

Weight (kDa)

5.89

Isoelectric Point (pI)

19.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378641 RchiOBHm_Chr1g0378651
rosa_laevigata	RLG00000026415
rosa_multiflora	Rmu_sc0002395.1_g000017 Rmu_sc0013199.1_g000009
rosa_roxburghii	Rroxscaffold_3G00228460 Rroxscaffold_4G00278940 Rroxscaffold_4G00278950 Rroxscaffold_5G00358580
rosa_samantha	Rh1AG431900 Rh1AG432000 Rh1AG432600 Rh1AG432700 Rh1BG390300 Rh1BG390500 Rh1BG390700 Rh1BG390800 Rh1CG403400 Rh1CG403500 Rh1DG421400 Rh1DG421600 Rh1DG421800 Rh1DG421900
rosa_wichuraiana	Rw1G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	132
AfaI	GTAC	2 cut(s)	78, 283
AfiI	CCNNNNNNNGG	1 cut(s)	371
AflIII	ACRYGT	2 cut(s)	29, 316
AgsI	TTSAA	2 cut(s)	125, 380
AjnI	CCWGG	2 cut(s)	198, 364
AluBI	AGCT	2 cut(s)	158, 460
AluI	AGCT	2 cut(s)	158, 460
Alw21I	GWGCWC	4 cut(s)	266, 316, 346, 452
Alw26I	GTCTC	2 cut(s)	86, 325
Alw44I	GTGCAC	1 cut(s)	312
Ama87I	CYCGRG	1 cut(s)	191
ApaLI	GTGCAC	1 cut(s)	312
ApeKI	GCWGC	2 cut(s)	410, 457
ApoI	RAATTY	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	3 cut(s)	251, 274, 401
AsuHPI	GGTGA	1 cut(s)	380
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	3 cut(s)	251, 274, 401
BaeGI	GKGCMC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	4 cut(s)	266, 316, 346, 452
BbvI	GCAGC	2 cut(s)	397, 469
BccI	CCATC	2 cut(s)	410, 473
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BciT130I	CCWGG	2 cut(s)	200, 366
BcoDI	GTCTC	2 cut(s)	86, 325
BfaI	CTAG	4 cut(s)	18, 117, 393, 476
BisI	GCNGC	2 cut(s)	411, 458
BlsI	GCNGC	2 cut(s)	412, 459
Bme1390I	CCNGG	2 cut(s)	200, 366
Bme18I	GGWCC	3 cut(s)	251, 274, 401
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	3 cut(s)	251, 274, 401
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	2 cut(s)	200, 366
BmsI	GCATC	3 cut(s)	103, 223, 488
BpuEI	CTTGAG	1 cut(s)	110
Bsa29I	ATCGAT	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	80
BsaJI	CCNNGG	3 cut(s)	277, 364, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	2 cut(s)	200, 366
BseCI	ATCGAT	1 cut(s)	290
BseDI	CCNNGG	3 cut(s)	277, 364, 397
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMI	GCAATG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	343
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	397, 469
BshVI	ATCGAT	1 cut(s)	290
BsiHKAI	GWGCWC	4 cut(s)	266, 316, 346, 452
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	2 cut(s)	64, 287
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	2 cut(s)	86, 325
BsmFI	GGGAC	2 cut(s)	64, 287
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	5 cut(s)	192, 266, 316, 346, 452
Bsp143I	GATC	1 cut(s)	291
BspDI	ATCGAT	1 cut(s)	290
BspHI	TCATGA	1 cut(s)	503
BspLI	GGNNCC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	3 cut(s)	277, 364, 397
BssMI	GATC	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	2 cut(s)	200, 366
Bst4CI	ACNGT	2 cut(s)	97, 268
BstAPI	GCANNNNNTGC	1 cut(s)	463
BstBAI	YACGTR	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	241
BstENI	CCTNNNNNAGG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	2 cut(s)	86, 325
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 463
BstNI	CCWGG	2 cut(s)	200, 366
BstNSI	RCATGY	2 cut(s)	33, 320
BstSCI	CCNGG	2 cut(s)	198, 364
BstSLI	GKGCMC	1 cut(s)	316
BstV1I	GCAGC	2 cut(s)	397, 469
Bsu15I	ATCGAT	1 cut(s)	290
BsuTUI	ATCGAT	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	1 cut(s)	241
CciI	TCATGA	1 cut(s)	503
CfoI	GCGC	1 cut(s)	457
Cfr13I	GGNCC	3 cut(s)	251, 274, 401
ClaI	ATCGAT	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	77, 282
CviAII	CATG	3 cut(s)	30, 317, 504
CviJI	RGCY	7 cut(s)	158, 190, 203, 335, 362, 396, 460
CviKI_1	RGCY	7 cut(s)	158, 190, 203, 335, 362, 396, 460
CviQI	GTAC	2 cut(s)	77, 282
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	3 cut(s)	251, 274, 401
Eco88I	CYCGRG	1 cut(s)	191
EcoNI	CCTNNNNNAGG	1 cut(s)	369
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	2 cut(s)	198, 364
EcoT14I	CCWWGG	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	3 cut(s)	33, 320, 507
FaiI	YATR	6 cut(s)	31, 42, 303, 318, 444, 505
FaqI	GGGAC	2 cut(s)	64, 287
FatI	CATG	3 cut(s)	29, 316, 503
Fnu4HI	GCNGC	2 cut(s)	411, 458
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	2 cut(s)	411, 458
FspBI	CTAG	4 cut(s)	18, 117, 393, 476
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	2 cut(s)	411, 458
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	3 cut(s)	33, 320, 507
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	483
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	3 cut(s)	100, 208, 314
Hpy188III	TCNNGA	1 cut(s)	504
Hpy8I	GTNNAC	3 cut(s)	100, 208, 314
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	2 cut(s)	97, 268
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	3 cut(s)	183, 314, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 463
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	3 cut(s)	33, 320, 507
HspAI	GCGC	1 cut(s)	455
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	471
Lsp1109I	GCAGC	2 cut(s)	397, 469
LweI	GCATC	3 cut(s)	103, 223, 488
MaeI	CTAG	4 cut(s)	18, 117, 393, 476
MaeII	ACGT	1 cut(s)	79
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MhlI	GDGCHC	5 cut(s)	192, 266, 316, 346, 452
MluCI	AATT	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	477
MnlI	CCTC	1 cut(s)	392
MseI	TTAA	1 cut(s)	6
MspA1I	CMGCKG	1 cut(s)	460
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	2 cut(s)	200, 366
MvaI	CCWGG	2 cut(s)	200, 366
MwoI	GCNNNNNNNGC	2 cut(s)	341, 463
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	3 cut(s)	33, 320, 507
NlaIV	GGNNCC	1 cut(s)	275
NmeAIII	GCCGAG	2 cut(s)	422, 431
NspI	RCATGY	2 cut(s)	33, 320
PaeR7I	CTCGAG	1 cut(s)	191
PagI	TCATGA	1 cut(s)	503
PciI	ACATGT	2 cut(s)	29, 316
PkrI	GCNGC	2 cut(s)	412, 459
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
Ppu21I	YACGTR	1 cut(s)	80
PpuMI	RGGWCCY	1 cut(s)	274
PscI	ACATGT	2 cut(s)	29, 316
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	2 cut(s)	198, 364
PspGI	CCWGG	2 cut(s)	198, 364
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	3 cut(s)	251, 274, 401
PspPPI	RGGWCCY	1 cut(s)	274
PspXI	VCTCGAGB	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	460
RsaI	GTAC	2 cut(s)	78, 283
RsaNI	GTAC	2 cut(s)	77, 282
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	2 cut(s)	411, 458
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	3 cut(s)	251, 274, 401
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	2 cut(s)	200, 366
SduI	GDGCHC	5 cut(s)	192, 266, 316, 346, 452
SetI	ASST	5 cut(s)	82, 160, 279, 437, 462
SfaNI	GCATC	3 cut(s)	103, 223, 488
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	3 cut(s)	251, 274, 401
SlaI	CTCGAG	1 cut(s)	191
SmlI	CTYRAG	2 cut(s)	89, 191
SmoI	CTYRAG	2 cut(s)	89, 191
Sse9I	AATT	1 cut(s)	132
SspMI	CTAG	4 cut(s)	18, 117, 393, 476
StyD4I	CCNGG	2 cut(s)	198, 364
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	2 cut(s)	97, 268
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	2 cut(s)	192, 290
TasI	AATT	1 cut(s)	132
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	2 cut(s)	410, 457
TspDTI	ATGAA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	271
VneI	GTGCAC	1 cut(s)	312
VpaK11BI	GGWCC	3 cut(s)	251, 274, 401
XagI	CCTNNNNNAGG	1 cut(s)	369
XapI	RAATTY	1 cut(s)	132
XceI	RCATGY	2 cut(s)	33, 320
XhoI	CTCGAG	1 cut(s)	191
XspI	CTAG	4 cut(s)	18, 117, 393, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.