Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013199.1

Orthogroup ID

OG0008172

Physical Location & Seq

Genomic Coordinates Forward (+)

49774 .. 52117

Gene Structure 2344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013199.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgagcggtgctaaaccaccttctctcttccttgtgcactactttcatcgaagagacacatcggcgtccaacgtctcccccatatggacttattttgtagagtcaccggctttgagggacggacaacccgatgcgaccctcacttattgggaggcaaccgtgaaaaggaagatattgaggatcgtgacagattgctctccccatggcacacatgttgctggcattgatactgctttacatgcaaaggaggcccggcctgtcgaatggagttgcacctggagcacagttacatattgtaaaattggggacgcacgcttaggttcaatagagacaagaactgggcttactcgagttttgattgctgctgtggaggctgtgaacaagcatcgtctggtatttgtgagtaatgctggcaatagtggtccggcattgagcactgttgggcaccttggtactacatcgatcaagcaatataggagtggtgcacatgtctctcctgcaatggctgctggtgctcattgtgtagatgaagcccctggtgaagggtttgaatacacttggtctagccgaggaccaactgctgccgatggagatcttggtgtcaagtgtctctataagtgctcggcgcagctgttgctcctgttcctagatggactctccaacgacagatgctcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

225

Amino Acids

24.22

Weight (kDa)

8.16

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378641 RchiOBHm_Chr1g0378651
rosa_laevigata	RLG00000026415
rosa_multiflora	Rmu_sc0002395.1_g000017 Rmu_sc0013199.1_g000009
rosa_roxburghii	Rroxscaffold_3G00228460 Rroxscaffold_4G00278940 Rroxscaffold_4G00278950 Rroxscaffold_5G00358580
rosa_samantha	Rh1AG431900 Rh1AG432000 Rh1AG432600 Rh1AG432700 Rh1BG390300 Rh1BG390500 Rh1BG390700 Rh1BG390800 Rh1CG403400 Rh1CG403500 Rh1DG421400 Rh1DG421600 Rh1DG421800 Rh1DG421900
rosa_wichuraiana	Rw1G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	444
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	188
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	3 cut(s)	84, 165, 542
AflIII	ACRYGT	2 cut(s)	211, 487
AgsI	TTSAA	2 cut(s)	324, 551
AjnI	CCWGG	2 cut(s)	275, 535
AluBI	AGCT	1 cut(s)	631
AluI	AGCT	1 cut(s)	631
Alw21I	GWGCWC	6 cut(s)	39, 284, 437, 487, 517, 623
Alw26I	GTCTC	5 cut(s)	48, 79, 323, 496, 614
Alw44I	GTGCAC	2 cut(s)	35, 483
AlwI	GGATC	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	348
AoxI	GGCC	2 cut(s)	249, 254
ApaLI	GTGCAC	2 cut(s)	35, 483
ApeKI	GCWGC	4 cut(s)	362, 506, 581, 628
AspLEI	GCGC	1 cut(s)	628
AspS9I	GGNCC	3 cut(s)	250, 422, 572
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	96, 551
AvaI	CYCGRG	1 cut(s)	348
AvaII	GGWCC	2 cut(s)	422, 572
BaeGI	GKGCMC	3 cut(s)	39, 447, 487
BanI	GGYRCC	1 cut(s)	444
Bbv12I	GWGCWC	6 cut(s)	39, 284, 437, 487, 517, 623
BbvI	GCAGC	4 cut(s)	349, 493, 568, 640
BccI	CCATC	2 cut(s)	581, 644
BciT130I	CCWGG	2 cut(s)	277, 537
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	5 cut(s)	48, 79, 323, 496, 614
BfaI	CTAG	2 cut(s)	564, 647
BglII	AGATCT	1 cut(s)	592
BisI	GCNGC	4 cut(s)	363, 507, 582, 629
BlsI	GCNGC	4 cut(s)	364, 508, 583, 630
Bme1390I	CCNGG	3 cut(s)	253, 277, 537
Bme18I	GGWCC	2 cut(s)	422, 572
BmeT110I	CYCGRG	1 cut(s)	348
BmgT120I	GGNCC	3 cut(s)	250, 422, 572
BmiI	GGNNCC	1 cut(s)	446
BmrFI	CCNGG	3 cut(s)	253, 277, 537
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	3 cut(s)	121, 394, 659
BmuI	ACTGGG	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	298
Bpu10I	CCTNAGC	1 cut(s)	316
BpuMI	CCSGG	1 cut(s)	253
Bsa29I	ATCGAT	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	591
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	4 cut(s)	202, 448, 535, 568
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 165, 542
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	507
Bse8I	GATNNNNATC	1 cut(s)	591
BseBI	CCWGG	2 cut(s)	277, 537
BseCI	ATCGAT	1 cut(s)	461
BseDI	CCNNGG	4 cut(s)	202, 448, 535, 568
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	3 cut(s)	84, 165, 542
BseMI	GCAATG	1 cut(s)	507
BseNI	ACTGG	1 cut(s)	343
BseSI	GKGCMC	3 cut(s)	39, 447, 487
BseXI	GCAGC	4 cut(s)	349, 493, 568, 640
BshFI	GGCC	2 cut(s)	251, 256
BshNI	GGYRCC	1 cut(s)	444
BshVI	ATCGAT	1 cut(s)	461
BsiHKAI	GWGCWC	6 cut(s)	39, 284, 437, 487, 517, 623
BsiHKCI	CYCGRG	1 cut(s)	348
BsiSI	CCGG	3 cut(s)	107, 253, 425
BslFI	GGGAC	2 cut(s)	131, 320
BslI	CCNNNNNNNGG	3 cut(s)	84, 165, 542
BsmAI	GTCTC	5 cut(s)	48, 79, 323, 496, 614
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	2 cut(s)	131, 320
BsnI	GGCC	2 cut(s)	251, 256
BsoBI	CYCGRG	1 cut(s)	348
Bsp1286I	GDGCHC	7 cut(s)	39, 284, 437, 447, 487, 517, 623
Bsp143I	GATC	3 cut(s)	180, 462, 592
Bsp19I	CCATGG	1 cut(s)	202
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	2 cut(s)	251, 256
BspDI	ATCGAT	1 cut(s)	461
BspHI	TCATGA	1 cut(s)	674
BspLI	GGNNCC	1 cut(s)	446
BspPI	GGATC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	444
BsrBI	CCGCTC	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	507
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	343
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	4 cut(s)	202, 448, 535, 568
BssMI	GATC	3 cut(s)	180, 462, 592
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	2 cut(s)	202, 448
Bst2UI	CCWGG	2 cut(s)	277, 537
Bst4CI	ACNGT	3 cut(s)	160, 286, 439
Bst6I	CTCTTC	2 cut(s)	32, 46
BstACI	GRCGYC	1 cut(s)	65
BstAPI	GCANNNNNTGC	2 cut(s)	506, 634
BstC8I	GCNNGC	3 cut(s)	220, 313, 412
BstDEI	CTNAG	1 cut(s)	316
BstDSI	CCRYGG	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	540
BstHHI	GCGC	1 cut(s)	628
BstKTI	GATC	3 cut(s)	183, 465, 595
BstMAI	GTCTC	5 cut(s)	48, 79, 323, 496, 614
BstMBI	GATC	3 cut(s)	180, 462, 592
BstMWI	GCNNNNNNNGC	7 cut(s)	239, 248, 279, 371, 506, 512, 634
BstNI	CCWGG	2 cut(s)	277, 537
BstNSI	RCATGY	3 cut(s)	215, 242, 491
BstSCI	CCNGG	3 cut(s)	251, 275, 535
BstSLI	GKGCMC	3 cut(s)	39, 447, 487
BstV1I	GCAGC	4 cut(s)	349, 493, 568, 640
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
Bsu15I	ATCGAT	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	251, 256
BsuTUI	ATCGAT	1 cut(s)	461
BtgI	CCRYGG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	3 cut(s)	220, 313, 412
CciI	TCATGA	1 cut(s)	674
CfoI	GCGC	1 cut(s)	628
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	3 cut(s)	250, 422, 572
ClaI	ATCGAT	1 cut(s)	461
CseI	GACGC	2 cut(s)	54, 317
Csp6I	GTAC	1 cut(s)	453
CviAII	CATG	5 cut(s)	203, 212, 239, 488, 675
CviJI	RGCY	9 cut(s)	110, 251, 256, 343, 374, 506, 533, 567, 631
CviKI_1	RGCY	9 cut(s)	110, 251, 256, 343, 374, 506, 533, 567, 631
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	1 cut(s)	316
DpnI	GATC	3 cut(s)	182, 464, 594
DpnII	GATC	3 cut(s)	180, 462, 592
Eam1104I	CTCTTC	2 cut(s)	32, 46
EarI	CTCTTC	2 cut(s)	32, 46
Eco130I	CCWWGG	2 cut(s)	202, 448
Eco47I	GGWCC	2 cut(s)	422, 572
Eco88I	CYCGRG	1 cut(s)	348
EcoNI	CCTNNNNNAGG	1 cut(s)	540
EcoRII	CCWGG	2 cut(s)	275, 535
EcoT14I	CCWWGG	2 cut(s)	202, 448
ErhI	CCWWGG	2 cut(s)	202, 448
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	5 cut(s)	206, 215, 242, 491, 678
FaqI	GGGAC	2 cut(s)	131, 320
FatI	CATG	5 cut(s)	202, 211, 238, 487, 674
FauNDI	CATATG	1 cut(s)	83
Fnu4HI	GCNGC	4 cut(s)	363, 507, 582, 629
Fsp4HI	GCNGC	4 cut(s)	363, 507, 582, 629
FspBI	CTAG	2 cut(s)	564, 647
GlaI	GCGC	1 cut(s)	627
GluI	GCNGC	4 cut(s)	363, 507, 582, 629
GsuI	CTGGAG	1 cut(s)	298
HaeIII	GGCC	2 cut(s)	251, 256
HapII	CCGG	3 cut(s)	107, 253, 425
HgaI	GACGC	2 cut(s)	54, 317
HhaI	GCGC	1 cut(s)	628
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	5 cut(s)	206, 215, 242, 491, 678
Hin6I	GCGC	1 cut(s)	626
HinP1I	GCGC	1 cut(s)	626
HinfI	GANTC	2 cut(s)	101, 654
HpaII	CCGG	3 cut(s)	107, 253, 425
HphI	GGTGA	2 cut(s)	96, 551
Hpy166II	GTNNAC	3 cut(s)	37, 379, 485
Hpy188III	TCNNGA	2 cut(s)	184, 675
Hpy8I	GTNNAC	3 cut(s)	37, 379, 485
HpyAV	CCTTC	2 cut(s)	30, 536
HpyCH4III	ACNGT	3 cut(s)	160, 286, 439
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	5 cut(s)	37, 242, 273, 485, 500
HpyF10VI	GCNNNNNNNGC	7 cut(s)	239, 248, 279, 371, 506, 512, 634
HpyF3I	CTNAG	1 cut(s)	316
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	5 cut(s)	206, 215, 242, 491, 678
HspAI	GCGC	1 cut(s)	626
Kzo9I	GATC	3 cut(s)	180, 462, 592
LmnI	GCTCC	2 cut(s)	279, 642
Lsp1109I	GCAGC	4 cut(s)	349, 493, 568, 640
LweI	GCATC	3 cut(s)	121, 394, 659
MaeI	CTAG	2 cut(s)	564, 647
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	3 cut(s)	102, 184, 286
MalI	GATC	3 cut(s)	182, 464, 594
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	3 cut(s)	180, 462, 592
MboII	GAAGA	3 cut(s)	19, 63, 181
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	7 cut(s)	39, 284, 437, 447, 487, 517, 623
MluCI	AATT	1 cut(s)	300
MlyI	GAGTC	2 cut(s)	110, 648
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	7 cut(s)	108, 145, 149, 171, 241, 364, 563
MspA1I	CMGCKG	1 cut(s)	631
MspI	CCGG	3 cut(s)	107, 253, 425
MspR9I	CCNGG	3 cut(s)	253, 277, 537
MvaI	CCWGG	2 cut(s)	277, 537
MwoI	GCNNNNNNNGC	7 cut(s)	239, 248, 279, 371, 506, 512, 634
NciI	CCSGG	1 cut(s)	253
NcoI	CCATGG	1 cut(s)	202
NdeI	CATATG	1 cut(s)	83
NdeII	GATC	3 cut(s)	180, 462, 592
NlaIII	CATG	5 cut(s)	206, 215, 242, 491, 678
NlaIV	GGNNCC	1 cut(s)	446
NmeAIII	GCCGAG	2 cut(s)	593, 602
NmuCI	GTSAC	2 cut(s)	102, 184
NspI	RCATGY	3 cut(s)	215, 242, 491
PaeR7I	CTCGAG	1 cut(s)	348
PagI	TCATGA	1 cut(s)	674
PciI	ACATGT	2 cut(s)	211, 487
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PkrI	GCNGC	4 cut(s)	364, 508, 583, 630
PleI	GAGTC	2 cut(s)	109, 648
PpsI	GAGTC	2 cut(s)	109, 648
PscI	ACATGT	2 cut(s)	211, 487
Psp6I	CCWGG	2 cut(s)	275, 535
PspGI	CCWGG	2 cut(s)	275, 535
PspN4I	GGNNCC	1 cut(s)	446
PspPI	GGNCC	3 cut(s)	250, 422, 572
PspXI	VCTCGAGB	1 cut(s)	348
PsrI	GAACNNNNNNTAC	2 cut(s)	328, 360
PsuI	RGATCY	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	631
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
SatI	GCNGC	4 cut(s)	363, 507, 582, 629
Sau3AI	GATC	3 cut(s)	180, 462, 592
Sau96I	GGNCC	3 cut(s)	250, 422, 572
SchI	GAGTC	2 cut(s)	110, 648
ScrFI	CCNGG	3 cut(s)	253, 277, 537
SduI	GDGCHC	7 cut(s)	39, 284, 437, 447, 487, 517, 623
SetI	ASST	6 cut(s)	22, 75, 278, 322, 450, 633
SfaNI	GCATC	3 cut(s)	121, 394, 659
Sfr274I	CTCGAG	1 cut(s)	348
SinI	GGWCC	2 cut(s)	422, 572
SlaI	CTCGAG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
Sse9I	AATT	1 cut(s)	300
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	2 cut(s)	564, 647
StyD4I	CCNGG	3 cut(s)	251, 275, 535
StyI	CCWWGG	2 cut(s)	202, 448
TaaI	ACNGT	3 cut(s)	160, 286, 439
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	4 cut(s)	49, 261, 349, 461
TasI	AATT	1 cut(s)	300
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	2 cut(s)	102, 184
TseI	GCWGC	4 cut(s)	362, 506, 581, 628
Tsp45I	GTSAC	2 cut(s)	102, 184
TspDTI	ATGAA	2 cut(s)	35, 543
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	442
VneI	GTGCAC	2 cut(s)	35, 483
VpaK11BI	GGWCC	2 cut(s)	422, 572
XagI	CCTNNNNNAGG	1 cut(s)	540
XceI	RCATGY	3 cut(s)	215, 242, 491
XhoI	CTCGAG	1 cut(s)	348
XspI	CTAG	2 cut(s)	564, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.