Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008172

Physical Location & Seq

Genomic Coordinates Forward (+)

65805766 .. 65807904

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG431900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAGCGGCGCAAAACCACCTTCTCTCTTCCTTCAGTTCCTTGTACACTACTTTCATCGAAGAGACACATCAGTGTCCAACGTCTCCCCCATATGGACTTATTTTGTAGAGTCACTGGCTTTTAGGGACGGACAACCCGATGCGACCCTCACTGGTTGGGAGGCAACCGTGAAAAGTGATTTCGGAGACCACGGGCGGAGCGAGAGGTGGCTATCCTGTGTTATAGCTCAAAAACACAGTAGAGTGGAGGATGCTAACTTGAAAAGGGCTCGGGAGGACCTGCAAAACAGACTTGATTACCGAAAAAAGCAAGCTGAGAGCTATGATGAAAAAGGTCCTGTCATAGATGCTGTTGTATGGCATGATGGAGAAGTATGGAGAGTTTCCATTGACACACAGACTCTTGAGGATGACCCTGATTGTGGAAAACTCGCTGACTTTGTGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

149

Amino Acids

17.1

Weight (kDa)

5.32

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378641 RchiOBHm_Chr1g0378651
rosa_laevigata	RLG00000026415
rosa_multiflora	Rmu_sc0002395.1_g000017 Rmu_sc0013199.1_g000009
rosa_roxburghii	Rroxscaffold_3G00228460 Rroxscaffold_4G00278940 Rroxscaffold_4G00278950 Rroxscaffold_5G00358580
rosa_samantha	Rh1AG431900 Rh1AG432000 Rh1AG432600 Rh1AG432700 Rh1BG390300 Rh1BG390500 Rh1BG390700 Rh1BG390800 Rh1CG403400 Rh1CG403500 Rh1DG421400 Rh1DG421600 Rh1DG421800 Rh1DG421900
rosa_wichuraiana	Rw1G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	288
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	2 cut(s)	6, 196
AcuI	CTGAAG	1 cut(s)	17
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	2 cut(s)	93, 422
AgsI	TTSAA	1 cut(s)	262
AleI	CACNNNNGTG	1 cut(s)	71
AluBI	AGCT	3 cut(s)	227, 314, 321
AluI	AGCT	3 cut(s)	227, 314, 321
Alw26I	GTCTC	3 cut(s)	57, 88, 180
Ama87I	CYCGRG	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	277, 335
AvaI	CYCGRG	1 cut(s)	270
AvaII	GGWCC	2 cut(s)	277, 335
BaeGI	GKGCMC	1 cut(s)	447
BanII	GRGCYC	1 cut(s)	271
BccI	CCATC	1 cut(s)	359
BcoDI	GTCTC	3 cut(s)	57, 88, 180
BfuAI	ACCTGC	1 cut(s)	288
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme18I	GGWCC	2 cut(s)	277, 335
BmeT110I	CYCGRG	1 cut(s)	270
BmgT120I	GGNCC	2 cut(s)	277, 335
BmsI	GCATC	3 cut(s)	130, 241, 337
BpuEI	CTTGAG	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 422
Bse1I	ACTGG	2 cut(s)	120, 157
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	2 cut(s)	256, 415
BseLI	CCNNNNNNNGG	2 cut(s)	93, 422
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	2 cut(s)	120, 157
BseSI	GKGCMC	1 cut(s)	447
BsiHKCI	CYCGRG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	93, 422
BsmAI	GTCTC	3 cut(s)	57, 88, 180
BsmBI	CGTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	270
Bsp1286I	GDGCHC	2 cut(s)	271, 447
Bsp1407I	TGTACA	1 cut(s)	43
BspACI	CCGC	2 cut(s)	6, 196
BspCNI	CTCAG	1 cut(s)	307
BspMI	ACCTGC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	180
BsrBI	CCGCTC	1 cut(s)	6
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	120, 157
BssECI	CCNNGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	169, 239
Bst6I	CTCTTC	2 cut(s)	32, 55
BstAUI	TGTACA	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	315
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	2 cut(s)	256, 415
BstHHI	GCGC	1 cut(s)	11
BstMAI	GTCTC	3 cut(s)	57, 88, 180
BstSLI	GKGCMC	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	256, 415
BtsIMutI	CAGTG	3 cut(s)	78, 113, 150
BveI	ACCTGC	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	312
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	277, 335
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	1 cut(s)	362
CviJI	RGCY	6 cut(s)	119, 211, 227, 269, 314, 321
CviKI_1	RGCY	6 cut(s)	119, 211, 227, 269, 314, 321
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	1 cut(s)	315
Eam1104I	CTCTTC	2 cut(s)	32, 55
EarI	CTCTTC	2 cut(s)	32, 55
EciI	GGCGGA	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	271
Eco31I	GGTCTC	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	277, 335
Eco57I	CTGAAG	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	270
EcoO109I	RGGNCCY	2 cut(s)	277, 335
EcoT38I	GRGCYC	1 cut(s)	271
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	1 cut(s)	365
FaiI	YATR	8 cut(s)	92, 94, 224, 324, 344, 358, 363, 376
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	1 cut(s)	361
FauNDI	CATATG	1 cut(s)	92
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	2 cut(s)	263, 422
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	1 cut(s)	7
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	1 cut(s)	7
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	365
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HinfI	GANTC	2 cut(s)	110, 400
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	2 cut(s)	272, 404
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	2 cut(s)	30, 41
HpyCH4III	ACNGT	2 cut(s)	169, 239
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	283
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	365
HspAI	GCGC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	6 cut(s)	101, 138, 229, 293, 351, 429
LweI	GCATC	3 cut(s)	130, 241, 337
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	111
MbiI	CCGCTC	1 cut(s)	6
MboII	GAAGA	2 cut(s)	19, 72
MhlI	GDGCHC	2 cut(s)	271, 447
MlyI	GAGTC	2 cut(s)	119, 394
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	6 cut(s)	154, 158, 198, 241, 268, 400
MslI	CAYNNNNRTG	1 cut(s)	71
NdeI	CATATG	1 cut(s)	92
NlaIII	CATG	1 cut(s)	365
NmuCI	GTSAC	1 cut(s)	111
OliI	CACNNNNGTG	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 198
PkrI	GCNGC	1 cut(s)	8
PleI	GAGTC	2 cut(s)	118, 394
PpsI	GAGTC	2 cut(s)	118, 394
PpuMI	RGGWCCY	2 cut(s)	277, 335
Psp5II	RGGWCCY	2 cut(s)	277, 335
PspPI	GGNCC	2 cut(s)	277, 335
PspPPI	RGGWCCY	2 cut(s)	277, 335
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	71
SatI	GCNGC	1 cut(s)	7
Sau96I	GGNCC	2 cut(s)	277, 335
SchI	GAGTC	2 cut(s)	119, 394
SduI	GDGCHC	2 cut(s)	271, 447
SetI	ASST	8 cut(s)	22, 84, 209, 229, 282, 316, 323, 337
SfaNI	GCATC	3 cut(s)	130, 241, 337
SinI	GGWCC	2 cut(s)	277, 335
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SsiI	CCGC	2 cut(s)	6, 196
TaaI	ACNGT	2 cut(s)	169, 239
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	58
TatI	WGTACW	1 cut(s)	43
TauI	GCSGC	1 cut(s)	9
TscAI	CASTG	3 cut(s)	78, 120, 157
TseFI	GTSAC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	111
TspDTI	ATGAA	2 cut(s)	44, 342
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	3 cut(s)	78, 120, 157
VpaK11BI	GGWCC	2 cut(s)	277, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.