Rroxscaffold_5G00358580
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0008172
Physical Location & Seq
Forward (+)
38643634 .. 38660333
16700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00358580.1

Sequence Viewer

Length: 729 bp
ATGTACCAAACGAAGTCTTTGGTGGTGGCGGTCATTTTTGTACAGGGATGGTTCGCTTTGTCGAGTGGCTTCCATGACCTACGACGACCTGGGTTGTGGAGGTATTGGGTGACGGTGTTGGGTGTTAATCGAAGGGCATTGCATCTTGGTGACGCTAGTTTGTGGCGGCCTGGTATGTTACGGCATGGGGCTTGGTGGCGTGGGTCGCAGCGGAATGAATGTGGCGGTGTGGTTCGACGGACCTGCACCGAAACCGTACTTGCAGCCGCTGAGCAGGTCAACTTGGTGCGTGATGCTAGTGTTCAAAAGGAAATTTCTAACTCTGTTGGGAAACAAGCTCTTGTTCTTTCTATTGTGGAGCGCAAGGGGCTCGAGTTCCAGCAGTTTGCTTCTCCGGCGAAATTCTCCAGTTTCCGGCTATCTTCGGCGGTGAAATTGGCTCTATTGGGAGCGCCTCGAGTCACCGATCATCTTCCCTCAAGACTTCTAGCTGAAATTTCCACGTTTGGAAGTTCACCTGCAACAGTGGATAAATGGGAATACCATGATAAGGTTAATTGGTTAATTTACACAGCAGCACAACTAAAAAATGGTGTTGACAGGAATGCAGATTTGATGAAAAGCGAAGGGATTGTCACATGGTATTCTACCTTTAGGTGGAAGAGGAAGAGTCGGTGTCGGTTGTTGATGTTGGCTGAAAGTGGGTGTCCGGATTCGGCGACAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

242

Amino Acids

27.2

Weight (kDa)

10.06

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 526
Acc36I ACCTGC 3 cut(s) 251, 265, 526
AccIII TCCGGA 1 cut(s) 709
AciI CCGC 6 cut(s) 29, 166, 211, 225, 267, 428
AcsI RAATTY 3 cut(s) 312, 401, 495
AfaI GTAC 3 cut(s) 5, 42, 258
AfiI CCNNNNNNNGG 3 cut(s) 414, 550, 657
AgsI TTSAA 1 cut(s) 305
AjnI CCWGG 2 cut(s) 88, 169
AluBI AGCT 2 cut(s) 338, 491
AluI AGCT 2 cut(s) 338, 491
AlwNI CAGNNNCTG 1 cut(s) 269
Ama87I CYCGRG 2 cut(s) 371, 456
Aor13HI TCCGGA 1 cut(s) 709
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 3 cut(s) 208, 263, 575
ApoI RAATTY 3 cut(s) 312, 401, 495
ArsI GACNNNNNNTTYG 2 cut(s) 618, 650
AspLEI GCGC 2 cut(s) 363, 454
AspS9I GGNCC 1 cut(s) 240
AsuHPI GGTGA 5 cut(s) 121, 161, 442, 454, 507
AvaI CYCGRG 2 cut(s) 371, 456
AvaII GGWCC 1 cut(s) 240
BanII GRGCYC 1 cut(s) 372
BbvI GCAGC 3 cut(s) 220, 275, 587
BccI CCATC 1 cut(s) 42
BceAI ACGGC 1 cut(s) 197
BcgI CGANNNNNNTGC 4 cut(s) 225, 259, 352, 386
BciT130I CCWGG 2 cut(s) 90, 171
BfaI CTAG 3 cut(s) 156, 297, 488
BfoI RGCGCY 1 cut(s) 455
BfuAI ACCTGC 3 cut(s) 251, 265, 526
BisI GCNGC 5 cut(s) 167, 209, 264, 267, 576
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 5 cut(s) 168, 210, 265, 268, 577
Bme1390I CCNGG 2 cut(s) 90, 171
Bme18I GGWCC 1 cut(s) 240
BmeT110I CYCGRG 2 cut(s) 371, 456
BmgT120I GGNCC 1 cut(s) 240
BmrFI CCNGG 2 cut(s) 90, 171
BmsI GCATC 2 cut(s) 151, 283
BpmI CTGGAG 1 cut(s) 391
Bpu1102I GCTNAGC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 463
BsaJI CCNNGG 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 709
Bsc4I CCNNNNNNNGG 3 cut(s) 414, 550, 657
Bse1I ACTGG 1 cut(s) 408
Bse3DI GCAATG 1 cut(s) 137
BseAI TCCGGA 1 cut(s) 709
BseBI CCWGG 2 cut(s) 90, 171
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 53
BseLI CCNNNNNNNGG 3 cut(s) 414, 550, 657
BseMI GCAATG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 408
BseXI GCAGC 3 cut(s) 220, 275, 587
BsgI GTGCAG 1 cut(s) 229
BshFI GGCC 1 cut(s) 169
BsiHKCI CYCGRG 2 cut(s) 371, 456
BsiSI CCGG 3 cut(s) 395, 415, 710
BslI CCNNNNNNNGG 3 cut(s) 414, 550, 657
BsmI GAATGC 1 cut(s) 610
BsnI GGCC 1 cut(s) 169
BsoBI CYCGRG 2 cut(s) 371, 456
Bsp1286I GDGCHC 1 cut(s) 372
Bsp13I TCCGGA 1 cut(s) 709
Bsp1407I TGTACA 1 cut(s) 40
Bsp143I GATC 1 cut(s) 466
Bsp1720I GCTNAGC 1 cut(s) 270
BspACI CCGC 6 cut(s) 29, 166, 211, 225, 267, 428
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 262
BspEI TCCGGA 1 cut(s) 709
BspMI ACCTGC 3 cut(s) 251, 265, 526
BsrDI GCAATG 1 cut(s) 137
BsrGI TGTACA 1 cut(s) 40
BsrI ACTGG 1 cut(s) 408
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 1 cut(s) 466
Bst2UI CCWGG 2 cut(s) 90, 171
Bst4CI ACNGT 3 cut(s) 115, 256, 526
Bst6I CTCTTC 2 cut(s) 656, 662
BstAUI TGTACA 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 270
BstF5I GGATG 1 cut(s) 53
BstH2I RGCGCY 1 cut(s) 455
BstHHI GCGC 2 cut(s) 363, 454
BstKTI GATC 1 cut(s) 469
BstMBI GATC 1 cut(s) 466
BstMWI GCNNNNNNNGC 3 cut(s) 205, 367, 395
BstNI CCWGG 2 cut(s) 90, 171
BstSCI CCNGG 2 cut(s) 88, 169
BstV1I GCAGC 3 cut(s) 220, 275, 587
BsuRI GGCC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 531
BveI ACCTGC 3 cut(s) 251, 265, 526
CaiI CAGNNNCTG 1 cut(s) 269
CfoI GCGC 2 cut(s) 363, 454
Cfr13I GGNCC 1 cut(s) 240
CseI GACGC 1 cut(s) 161
Csp6I GTAC 3 cut(s) 4, 41, 257
CviAII CATG 4 cut(s) 74, 185, 545, 639
CviQI GTAC 3 cut(s) 4, 41, 257
DdeI CTNAG 1 cut(s) 270
DpnI GATC 1 cut(s) 468
DpnII GATC 1 cut(s) 466
Eam1104I CTCTTC 2 cut(s) 656, 662
EarI CTCTTC 2 cut(s) 656, 662
Eco24I GRGCYC 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 240
Eco88I CYCGRG 2 cut(s) 371, 456
EcoRII CCWGG 2 cut(s) 88, 169
EcoT38I GRGCYC 1 cut(s) 372
FaeI CATG 4 cut(s) 77, 188, 548, 642
FaiI YATR 6 cut(s) 75, 176, 186, 546, 640, 727
FatI CATG 4 cut(s) 73, 184, 544, 638
Fnu4HI GCNGC 5 cut(s) 167, 209, 264, 267, 576
FokI GGATG 1 cut(s) 60
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 5 cut(s) 167, 209, 264, 267, 576
FspBI CTAG 3 cut(s) 156, 297, 488
GlaI GCGC 2 cut(s) 362, 453
GluI GCNGC 5 cut(s) 167, 209, 264, 267, 576
GsuI CTGGAG 1 cut(s) 391
HaeII RGCGCY 1 cut(s) 455
HaeIII GGCC 1 cut(s) 169
HapII CCGG 3 cut(s) 395, 415, 710
HgaI GACGC 1 cut(s) 161
HhaI GCGC 2 cut(s) 363, 454
Hin1II CATG 4 cut(s) 77, 188, 548, 642
Hin6I GCGC 2 cut(s) 361, 452
HinP1I GCGC 2 cut(s) 361, 452
HincII GTYRAC 2 cut(s) 280, 598
HindII GTYRAC 2 cut(s) 280, 598
HinfI GANTC 3 cut(s) 459, 670, 713
HpaII CCGG 3 cut(s) 395, 415, 710
HphI GGTGA 5 cut(s) 121, 161, 442, 454, 507
Hpy166II GTNNAC 3 cut(s) 280, 515, 598
Hpy188III TCNNGA 2 cut(s) 480, 710
Hpy8I GTNNAC 3 cut(s) 280, 515, 598
Hpy99I CGWCG 2 cut(s) 87, 240
HpyAV CCTTC 2 cut(s) 126, 620
HpyCH4III ACNGT 3 cut(s) 115, 256, 526
HpyCH4IV ACGT 1 cut(s) 503
HpyCH4V TGCA 5 cut(s) 142, 246, 263, 521, 608
HpyF10VI GCNNNNNNNGC 3 cut(s) 205, 367, 395
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 503
Hsp92II CATG 4 cut(s) 77, 188, 548, 642
HspAI GCGC 2 cut(s) 361, 452
Kpn2I TCCGGA 1 cut(s) 709
Kzo9I GATC 1 cut(s) 466
LmnI GCTCC 2 cut(s) 358, 449
Lsp1109I GCAGC 3 cut(s) 220, 275, 587
LweI GCATC 2 cut(s) 151, 283
MaeI CTAG 3 cut(s) 156, 297, 488
MaeII ACGT 1 cut(s) 503
MaeIII GTNAC 5 cut(s) 109, 149, 177, 460, 634
MalI GATC 1 cut(s) 468
MboI GATC 1 cut(s) 466
MboII GAAGA 4 cut(s) 414, 464, 673, 679
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 6 cut(s) 312, 401, 434, 495, 556, 564
MlyI GAGTC 2 cut(s) 468, 679
MnlI CCTC 4 cut(s) 93, 465, 487, 657
MroI TCCGGA 1 cut(s) 709
MseI TTAA 3 cut(s) 126, 555, 563
MslI CAYNNNNRTG 1 cut(s) 147
MspA1I CMGCKG 2 cut(s) 211, 269
MspI CCGG 3 cut(s) 395, 415, 710
MspR9I CCNGG 2 cut(s) 90, 171
Mva1269I GAATGC 1 cut(s) 610
MvaI CCWGG 2 cut(s) 90, 171
MwoI GCNNNNNNNGC 3 cut(s) 205, 367, 395
NdeII GATC 1 cut(s) 466
NlaIII CATG 4 cut(s) 77, 188, 548, 642
NmuCI GTSAC 4 cut(s) 109, 149, 460, 634
PaeR7I CTCGAG 2 cut(s) 371, 456
PaqCI CACCTGC 1 cut(s) 526
PctI GAATGC 1 cut(s) 610
PfeI GAWTC 1 cut(s) 713
PkrI GCNGC 5 cut(s) 168, 210, 265, 268, 577
PleI GAGTC 2 cut(s) 467, 678
PpsI GAGTC 2 cut(s) 467, 678
Psp6I CCWGG 2 cut(s) 88, 169
PspGI CCWGG 2 cut(s) 88, 169
PspPI GGNCC 1 cut(s) 240
PspXI VCTCGAGB 2 cut(s) 371, 456
PstNI CAGNNNCTG 1 cut(s) 269
RsaI GTAC 3 cut(s) 5, 42, 258
RsaNI GTAC 3 cut(s) 4, 41, 257
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 3 cut(s) 126, 555, 563
SatI GCNGC 5 cut(s) 167, 209, 264, 267, 576
Sau3AI GATC 1 cut(s) 466
Sau96I GGNCC 1 cut(s) 240
SchI GAGTC 2 cut(s) 468, 679
ScrFI CCNGG 2 cut(s) 90, 171
SduI GDGCHC 1 cut(s) 372
SfaNI GCATC 2 cut(s) 151, 283
Sfr274I CTCGAG 2 cut(s) 371, 456
SinI GGWCC 1 cut(s) 240
SlaI CTCGAG 2 cut(s) 371, 456
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 3 cut(s) 371, 456, 478
SmoI CTYRAG 3 cut(s) 371, 456, 478
Sse9I AATT 6 cut(s) 312, 401, 434, 495, 556, 564
SsiI CCGC 6 cut(s) 29, 166, 211, 225, 267, 428
SspMI CTAG 3 cut(s) 156, 297, 488
StyD4I CCNGG 2 cut(s) 88, 169
TaaI ACNGT 3 cut(s) 115, 256, 526
TaiI ACGT 1 cut(s) 506
TaqI TCGA 5 cut(s) 62, 130, 235, 372, 457
TasI AATT 6 cut(s) 312, 401, 434, 495, 556, 564
TatI WGTACW 1 cut(s) 40
TauI GCSGC 2 cut(s) 169, 269
TfiI GAWTC 1 cut(s) 713
Tru1I TTAA 3 cut(s) 126, 555, 563
Tru9I TTAA 3 cut(s) 126, 555, 563
TscAI CASTG 1 cut(s) 531
TseFI GTSAC 4 cut(s) 109, 149, 460, 634
TseI GCWGC 3 cut(s) 208, 263, 575
Tsp45I GTSAC 4 cut(s) 109, 149, 460, 634
TspDTI ATGAA 2 cut(s) 231, 632
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 1 cut(s) 531
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 3 cut(s) 312, 401, 495
XhoI CTCGAG 2 cut(s) 371, 456
XspI CTAG 3 cut(s) 156, 297, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.