Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008172

Physical Location & Seq

Genomic Coordinates Forward (+)

65866820 .. 65883453

Gene Structure 16634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG432600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAGCGGCGCAAAACCACCTTCTCTCTTCCTTCAGTTCCTTGTACACTACTTTCATCGAAGAGACACATCAGCGTCCAACGTCTCCCCCATATGGACTTATTTTGTAGAGTCACTGGCTTTTAGGGACGGACAACCCGATGCGACCCTCACTCGTTGGGAGGCAACCGTGAAAAGTGATTTCGGAGACCACGGGCGGAGCGAGAGGTGGCTATCCTGTGTTATAGCTCAAAGAGAAATAAGGAAAAAATGGGATGAACAAAACCAAGAAATTGCAAAGGCTCTTAAGCATCTTCATGAATTTGACCAGGGGCTTCTGGGGCGGAAGAGGACTGCGCATATTGGGTCCAACAAAGCTGAGAGAGGCAGGGATGGCTCTTCTATGGAAGGAAGAAGGTCTGGCCTTGTGCATGAGAGTTCTTCTTCACAGGTAACTGGGGTAGGGAAATTTACTGAATTGGGAAGGCTCAGGGCTAGCGCCGATTCAAAAGACACGGAGAAACGGAAGAATAAAACCCACTTGCAGGTGCTTTTAAAGGAGGTTGCTACCTTTATGGGTGCTGTCGGATTCATGGTTGCTGCCATTGTTGCATATGTTGTTTGGATCAGAGGCTTCTTTACTGGTGATAGTTCAAATGGAAGTAGTGAACCTGGAAGTACACTTGAAGAAGCCATTCGAATTAGTATTATTGCACATAAATGTGATCCGATCAACATGAGCTATGTAGAATCAGCGTTACTGCCGGACTATGGGTGCTTTGTTGACTTCGTTAATGAAGCTGTGAACAAGCATCGTCTGGTATTTGTGAGTAGTGCTGGCATTACTGGTCCGGCATTGAGCACTGTTGGGCACCTCGGTACTACATCGATCAAGAATTATAGGAGTGGTGCATGTGTCTCTCCTGCAATGGCTGCTGGTGCTCATTGTGTAGCTGAAGCCCCTGGTGAAGAGCTTGAATACACTTGGTATATTAACTTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

327

Amino Acids

35.98

Weight (kDa)

8.22

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378641 RchiOBHm_Chr1g0378651
rosa_laevigata	RLG00000026415
rosa_multiflora	Rmu_sc0002395.1_g000017 Rmu_sc0013199.1_g000009
rosa_roxburghii	Rroxscaffold_3G00228460 Rroxscaffold_4G00278940 Rroxscaffold_4G00278950 Rroxscaffold_5G00358580
rosa_samantha	Rh1AG431900 Rh1AG432000 Rh1AG432600 Rh1AG432700 Rh1BG390300 Rh1BG390500 Rh1BG390700 Rh1BG390800 Rh1CG403400 Rh1CG403500 Rh1DG421400 Rh1DG421600 Rh1DG421800 Rh1DG421900
rosa_wichuraiana	Rw1G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	514
Acc16I	TGCGCA	1 cut(s)	336
Acc36I	ACCTGC	1 cut(s)	514
AccB1I	GGYRCC	1 cut(s)	849
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	3 cut(s)	6, 196, 322
AclWI	GGATC	2 cut(s)	611, 698
AcsI	RAATTY	2 cut(s)	299, 446
AcuI	CTGAAG	2 cut(s)	17, 954
AfaI	GTAC	3 cut(s)	45, 658, 859
AfiI	CCNNNNNNNGG	3 cut(s)	93, 523, 749
AflII	CTTAAG	1 cut(s)	284
AgsI	TTSAA	4 cut(s)	486, 633, 665, 956
AjnI	CCWGG	3 cut(s)	306, 649, 940
AluBI	AGCT	6 cut(s)	227, 356, 720, 779, 932, 952
AluI	AGCT	6 cut(s)	227, 356, 720, 779, 932, 952
Alw21I	GWGCWC	2 cut(s)	842, 922
Alw26I	GTCTC	4 cut(s)	57, 88, 180, 901
AlwI	GGATC	2 cut(s)	611, 698
AoxI	GGCC	1 cut(s)	400
ApeKI	GCWGC	2 cut(s)	578, 911
ApoI	RAATTY	2 cut(s)	299, 446
Asp700I	GAANNNNTTC	1 cut(s)	672
AspLEI	GCGC	3 cut(s)	11, 337, 479
AspS9I	GGNCC	2 cut(s)	345, 827
AsuHPI	GGTGA	2 cut(s)	635, 956
AsuII	TTCGAA	1 cut(s)	676
AsuNHI	GCTAGC	1 cut(s)	473
AvaII	GGWCC	2 cut(s)	345, 827
BaeGI	GKGCMC	1 cut(s)	852
BanI	GGYRCC	1 cut(s)	849
Bbv12I	GWGCWC	2 cut(s)	842, 922
BbvI	GCAGC	2 cut(s)	565, 898
BccI	CCATC	1 cut(s)	365
BciT130I	CCWGG	3 cut(s)	308, 651, 942
BcoDI	GTCTC	4 cut(s)	57, 88, 180, 901
BfaI	CTAG	1 cut(s)	474
BfoI	RGCGCY	1 cut(s)	480
BfrI	CTTAAG	1 cut(s)	284
BfuAI	ACCTGC	1 cut(s)	514
BisI	GCNGC	3 cut(s)	7, 579, 912
BlsI	GCNGC	3 cut(s)	8, 580, 913
Bme1390I	CCNGG	3 cut(s)	308, 651, 942
Bme18I	GGWCC	2 cut(s)	345, 827
BmgT120I	GGNCC	2 cut(s)	345, 827
BmiI	GGNNCC	2 cut(s)	346, 851
BmrFI	CCNGG	3 cut(s)	308, 651, 942
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	3 cut(s)	130, 298, 799
BmtI	GCTAGC	1 cut(s)	477
BmuI	ACTGGG	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	467
Bpu14I	TTCGAA	1 cut(s)	676
Bsa29I	ATCGAT	1 cut(s)	866
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	4 cut(s)	190, 307, 853, 940
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 523, 749
Bse1I	ACTGG	4 cut(s)	120, 439, 625, 829
Bse3DI	GCAATG	1 cut(s)	912
BseBI	CCWGG	3 cut(s)	308, 651, 942
BseCI	ATCGAT	1 cut(s)	866
BseDI	CCNNGG	4 cut(s)	190, 307, 853, 940
BseGI	GGATG	2 cut(s)	259, 376
BseLI	CCNNNNNNNGG	3 cut(s)	93, 523, 749
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	2 cut(s)	348, 481
BseNI	ACTGG	4 cut(s)	120, 439, 625, 829
BseSI	GKGCMC	1 cut(s)	852
BseXI	GCAGC	2 cut(s)	565, 898
BshFI	GGCC	1 cut(s)	402
BshNI	GGYRCC	1 cut(s)	849
BshVI	ATCGAT	1 cut(s)	866
BsiHKAI	GWGCWC	2 cut(s)	842, 922
BsiSI	CCGG	2 cut(s)	743, 830
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	3 cut(s)	93, 523, 749
BsmAI	GTCTC	4 cut(s)	57, 88, 180, 901
BsmBI	CGTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	402
Bso31I	GGTCTC	1 cut(s)	180
Bsp119I	TTCGAA	1 cut(s)	676
Bsp1286I	GDGCHC	3 cut(s)	842, 852, 922
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	4 cut(s)	603, 703, 708, 867
BspACI	CCGC	3 cut(s)	6, 196, 322
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	2 cut(s)	349, 480
BspDI	ATCGAT	1 cut(s)	866
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	346, 851
BspMI	ACCTGC	1 cut(s)	514
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	2 cut(s)	611, 698
BspQI	GCTCTTC	2 cut(s)	382, 942
BspT104I	TTCGAA	1 cut(s)	676
BspT107I	GGYRCC	1 cut(s)	849
BspTI	CTTAAG	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	180
BsrBI	CCGCTC	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	912
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	4 cut(s)	120, 439, 625, 829
BssECI	CCNNGG	4 cut(s)	190, 307, 853, 940
BssMI	GATC	4 cut(s)	603, 703, 708, 867
Bst2UI	CCWGG	3 cut(s)	308, 651, 942
Bst4CI	ACNGT	2 cut(s)	169, 844
Bst6I	CTCTTC	5 cut(s)	32, 55, 320, 382, 942
BstAFI	CTTAAG	1 cut(s)	284
BstAPI	GCANNNNNTGC	1 cut(s)	911
BstAUI	TGTACA	1 cut(s)	43
BstBI	TTCGAA	1 cut(s)	676
BstC8I	GCNNGC	2 cut(s)	475, 817
BstDEI	CTNAG	3 cut(s)	357, 467, 981
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	2 cut(s)	259, 376
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	3 cut(s)	11, 337, 479
BstKTI	GATC	4 cut(s)	606, 706, 711, 870
BstMAI	GTCTC	4 cut(s)	57, 88, 180, 901
BstMBI	GATC	4 cut(s)	603, 703, 708, 867
BstMWI	GCNNNNNNNGC	5 cut(s)	319, 372, 587, 911, 917
BstNI	CCWGG	3 cut(s)	308, 651, 942
BstNSI	RCATGY	1 cut(s)	894
BstSCI	CCNGG	3 cut(s)	306, 649, 940
BstSLI	GKGCMC	1 cut(s)	852
BstV1I	GCAGC	2 cut(s)	565, 898
Bsu15I	ATCGAT	1 cut(s)	866
BsuRI	GGCC	1 cut(s)	402
BsuTUI	ATCGAT	1 cut(s)	866
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	259, 376
BtsIMutI	CAGTG	2 cut(s)	113, 840
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	2 cut(s)	475, 817
CciI	TCATGA	1 cut(s)	295
CfoI	GCGC	3 cut(s)	11, 337, 479
Cfr13I	GGNCC	2 cut(s)	345, 827
ClaI	ATCGAT	1 cut(s)	866
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	3 cut(s)	44, 657, 858
CviAII	CATG	5 cut(s)	296, 410, 571, 715, 891
CviQI	GTAC	3 cut(s)	44, 657, 858
DdeI	CTNAG	3 cut(s)	357, 467, 981
DpnI	GATC	4 cut(s)	605, 705, 710, 869
DpnII	GATC	4 cut(s)	603, 703, 708, 867
DraI	TTTAAA	1 cut(s)	534
Eam1104I	CTCTTC	5 cut(s)	32, 55, 320, 382, 942
EarI	CTCTTC	5 cut(s)	32, 55, 320, 382, 942
EciI	GGCGGA	2 cut(s)	211, 337
Eco31I	GGTCTC	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	345, 827
Eco57I	CTGAAG	2 cut(s)	17, 954
EcoRII	CCWGG	3 cut(s)	306, 649, 940
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	5 cut(s)	299, 413, 574, 718, 894
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	5 cut(s)	295, 409, 570, 714, 890
FauNDI	CATATG	2 cut(s)	92, 592
Fnu4HI	GCNGC	3 cut(s)	7, 579, 912
FokI	GGATG	2 cut(s)	266, 383
Fsp4HI	GCNGC	3 cut(s)	7, 579, 912
FspBI	CTAG	1 cut(s)	474
FspI	TGCGCA	1 cut(s)	336
GlaI	GCGC	3 cut(s)	10, 336, 478
GluI	GCNGC	3 cut(s)	7, 579, 912
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	402
HapII	CCGG	2 cut(s)	743, 830
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	3 cut(s)	11, 337, 479
Hin1II	CATG	5 cut(s)	299, 413, 574, 718, 894
Hin6I	GCGC	3 cut(s)	9, 335, 477
HinP1I	GCGC	3 cut(s)	9, 335, 477
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HinfI	GANTC	4 cut(s)	110, 482, 567, 728
HpaII	CCGG	2 cut(s)	743, 830
HphI	GGTGA	2 cut(s)	635, 956
Hpy166II	GTNNAC	5 cut(s)	46, 647, 659, 763, 784
Hpy188I	TCNGA	4 cut(s)	185, 566, 608, 708
Hpy188III	TCNNGA	2 cut(s)	296, 871
Hpy8I	GTNNAC	5 cut(s)	46, 647, 659, 763, 784
HpyAV	CCTTC	5 cut(s)	30, 41, 380, 387, 456
HpyCH4III	ACNGT	2 cut(s)	169, 844
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	7 cut(s)	275, 409, 523, 590, 692, 890, 905
HpyF10VI	GCNNNNNNNGC	5 cut(s)	319, 372, 587, 911, 917
HpyF3I	CTNAG	3 cut(s)	357, 467, 981
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	5 cut(s)	299, 413, 574, 718, 894
HspAI	GCGC	3 cut(s)	9, 335, 477
Kzo9I	GATC	4 cut(s)	603, 703, 708, 867
LguI	GCTCTTC	2 cut(s)	382, 942
LmnI	GCTCC	1 cut(s)	198
Lsp1109I	GCAGC	2 cut(s)	565, 898
LweI	GCATC	3 cut(s)	130, 298, 799
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	3 cut(s)	111, 430, 735
MalI	GATC	4 cut(s)	605, 705, 710, 869
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	4 cut(s)	603, 703, 708, 867
MhlI	GDGCHC	3 cut(s)	842, 852, 922
MluCI	AATT	6 cut(s)	270, 299, 446, 455, 678, 874
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	3 cut(s)	102, 372, 544
MnlI	CCTC	8 cut(s)	154, 158, 198, 321, 356, 532, 602, 863
MroXI	GAANNNNTTC	1 cut(s)	672
MseI	TTAA	4 cut(s)	285, 533, 771, 972
MslI	CAYNNNNRTG	3 cut(s)	294, 697, 699
MspCI	CTTAAG	1 cut(s)	284
MspI	CCGG	2 cut(s)	743, 830
MspR9I	CCNGG	3 cut(s)	308, 651, 942
MvaI	CCWGG	3 cut(s)	308, 651, 942
MwoI	GCNNNNNNNGC	5 cut(s)	319, 372, 587, 911, 917
NdeI	CATATG	2 cut(s)	92, 592
NdeII	GATC	4 cut(s)	603, 703, 708, 867
NheI	GCTAGC	1 cut(s)	473
NlaIII	CATG	5 cut(s)	299, 413, 574, 718, 894
NlaIV	GGNNCC	2 cut(s)	346, 851
NmuCI	GTSAC	1 cut(s)	111
NsbI	TGCGCA	1 cut(s)	336
NspI	RCATGY	1 cut(s)	894
NspV	TTCGAA	1 cut(s)	676
PagI	TCATGA	1 cut(s)	295
PaqCI	CACCTGC	1 cut(s)	514
PciSI	GCTCTTC	2 cut(s)	382, 942
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 198
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	3 cut(s)	482, 567, 728
PkrI	GCNGC	3 cut(s)	8, 580, 913
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp6I	CCWGG	3 cut(s)	306, 649, 940
PspGI	CCWGG	3 cut(s)	306, 649, 940
PspN4I	GGNNCC	2 cut(s)	346, 851
PspPI	GGNCC	2 cut(s)	345, 827
RsaI	GTAC	3 cut(s)	45, 658, 859
RsaNI	GTAC	3 cut(s)	44, 657, 858
RseI	CAYNNNNRTG	3 cut(s)	294, 697, 699
SapI	GCTCTTC	2 cut(s)	382, 942
SaqAI	TTAA	4 cut(s)	285, 533, 771, 972
SatI	GCNGC	3 cut(s)	7, 579, 912
Sau3AI	GATC	4 cut(s)	603, 703, 708, 867
Sau96I	GGNCC	2 cut(s)	345, 827
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	3 cut(s)	308, 651, 942
SduI	GDGCHC	3 cut(s)	842, 852, 922
SfaNI	GCATC	3 cut(s)	130, 298, 799
SfuI	TTCGAA	1 cut(s)	676
SinI	GGWCC	2 cut(s)	345, 827
SmiMI	CAYNNNNRTG	3 cut(s)	294, 697, 699
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	6 cut(s)	270, 299, 446, 455, 678, 874
SsiI	CCGC	3 cut(s)	6, 196, 322
SspMI	CTAG	1 cut(s)	474
StyD4I	CCNGG	3 cut(s)	306, 649, 940
TaaI	ACNGT	2 cut(s)	169, 844
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	3 cut(s)	58, 676, 866
TasI	AATT	6 cut(s)	270, 299, 446, 455, 678, 874
TatI	WGTACW	2 cut(s)	43, 656
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	3 cut(s)	482, 567, 728
Tru1I	TTAA	4 cut(s)	285, 533, 771, 972
Tru9I	TTAA	4 cut(s)	285, 533, 771, 972
TscAI	CASTG	2 cut(s)	120, 847
TseFI	GTSAC	1 cut(s)	111
TseI	GCWGC	2 cut(s)	578, 911
Tsp45I	GTSAC	1 cut(s)	111
TspDTI	ATGAA	6 cut(s)	44, 270, 284, 312, 559, 789
TspGWI	ACGGA	3 cut(s)	144, 509, 517
TspRI	CASTG	2 cut(s)	120, 847
Vha464I	CTTAAG	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	345, 827
XapI	RAATTY	2 cut(s)	299, 446
XceI	RCATGY	1 cut(s)	894
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.