Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008172

Physical Location & Seq

Genomic Coordinates Forward (+)

63607813 .. 63609792

Gene Structure 1980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG421800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAGCGGCACTAAACCACCTTCTCTCTTCCTTGTACACTACTTTCATCGAAGAGACACATCGGCGTCCAACGTCTCCCCCATATGGACTTATTTTGTAGAGTCACTGGCTTTTAGGGACGGACAACCCGATGCGACCCTCACTTATTGGGAGGCAACCGTGAAAAGTGATTTCGGAGACCACGGGCGGAGCGAGAGGTGGCTATCCTGTGTTATAGCTCAAAGAGAAATAAGGAAAAAATGGGATGAACAAAACCAAGAAATTGCAAAGGCTGTTAAGCATCTTCATGAATTTGACCAGAAACACAGTAGAGTGGAGGATGCTAACTTGAAAAGGGCTCGGGGGGACCTGCAAAACAGAGTTGATTACCTAAAAAAGCAAGCTGAGAGCTATGATGAAAAAGGGCCTGTCATAGATGCTGTTGTATGGCATGATGGAGAAGTATGGAGAGTTTCCATTGACACAGAGACTGTTGAGGATGACCCTGATAGTGGAAAACTCGCTGACTTTGTGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

172

Amino Acids

19.92

Weight (kDa)

5.49

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378641 RchiOBHm_Chr1g0378651
rosa_laevigata	RLG00000026415
rosa_multiflora	Rmu_sc0002395.1_g000017 Rmu_sc0013199.1_g000009
rosa_roxburghii	Rroxscaffold_3G00228460 Rroxscaffold_4G00278940 Rroxscaffold_4G00278950 Rroxscaffold_5G00358580
rosa_samantha	Rh1AG431900 Rh1AG432000 Rh1AG432600 Rh1AG432700 Rh1BG390300 Rh1BG390500 Rh1BG390700 Rh1BG390800 Rh1CG403400 Rh1CG403500 Rh1DG421400 Rh1DG421600 Rh1DG421800 Rh1DG421900
rosa_wichuraiana	Rw1G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	357
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	2 cut(s)	6, 187
AcsI	RAATTY	1 cut(s)	290
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	84, 491
AgsI	TTSAA	1 cut(s)	331
AluBI	AGCT	3 cut(s)	218, 383, 390
AluI	AGCT	3 cut(s)	218, 383, 390
Alw26I	GTCTC	4 cut(s)	48, 79, 171, 461
AlwNI	CAGNNNCTG	1 cut(s)	470
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	1 cut(s)	404
ApoI	RAATTY	1 cut(s)	290
AspS9I	GGNCC	2 cut(s)	346, 404
AvaI	CYCGRG	1 cut(s)	339
AvaII	GGWCC	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	516
BanII	GRGCYC	1 cut(s)	340
BccI	CCATC	1 cut(s)	428
BcoDI	GTCTC	4 cut(s)	48, 79, 171, 461
BfuAI	ACCTGC	1 cut(s)	357
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	346
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	2 cut(s)	346, 404
BmiI	GGNNCC	1 cut(s)	347
BmsI	GCATC	4 cut(s)	121, 289, 310, 406
BsaHI	GRCGYC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 491
Bse1I	ACTGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	3 cut(s)	250, 325, 484
BseLI	CCNNNNNNNGG	2 cut(s)	84, 491
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	111
BseSI	GKGCMC	1 cut(s)	516
BshFI	GGCC	1 cut(s)	406
BsiHKCI	CYCGRG	1 cut(s)	339
BslFI	GGGAC	2 cut(s)	131, 359
BslI	CCNNNNNNNGG	2 cut(s)	84, 491
BsmAI	GTCTC	4 cut(s)	48, 79, 171, 461
BsmBI	CGTCTC	1 cut(s)	79
BsmFI	GGGAC	2 cut(s)	131, 359
BsnI	GGCC	1 cut(s)	406
Bso31I	GGTCTC	1 cut(s)	171
BsoBI	CYCGRG	1 cut(s)	339
Bsp1286I	GDGCHC	2 cut(s)	340, 516
Bsp1407I	TGTACA	1 cut(s)	34
BspACI	CCGC	2 cut(s)	6, 187
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	347
BspMI	ACCTGC	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	171
BsrBI	CCGCTC	1 cut(s)	6
BsrGI	TGTACA	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	181
BssNI	GRCGYC	1 cut(s)	65
Bst4CI	ACNGT	3 cut(s)	160, 308, 472
Bst6I	CTCTTC	2 cut(s)	32, 46
BstACI	GRCGYC	1 cut(s)	65
BstAUI	TGTACA	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	384
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	3 cut(s)	250, 325, 484
BstMAI	GTCTC	4 cut(s)	48, 79, 171, 461
BstSLI	GKGCMC	1 cut(s)	516
BsuRI	GGCC	1 cut(s)	406
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	3 cut(s)	250, 325, 484
BtsIMutI	CAGTG	1 cut(s)	104
BveI	ACCTGC	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	381
CaiI	CAGNNNCTG	1 cut(s)	470
CciI	TCATGA	1 cut(s)	286
Cfr13I	GGNCC	2 cut(s)	346, 404
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	35
CviAII	CATG	2 cut(s)	287, 431
CviJI	RGCY	8 cut(s)	110, 202, 218, 272, 338, 383, 390, 406
CviKI_1	RGCY	8 cut(s)	110, 202, 218, 272, 338, 383, 390, 406
CviQI	GTAC	1 cut(s)	35
DdeI	CTNAG	1 cut(s)	384
Eam1104I	CTCTTC	2 cut(s)	32, 46
EarI	CTCTTC	2 cut(s)	32, 46
EciI	GGCGGA	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	346
Eco88I	CYCGRG	1 cut(s)	339
EcoO109I	RGGNCCY	2 cut(s)	346, 404
EcoT38I	GRGCYC	1 cut(s)	340
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	2 cut(s)	290, 434
FaiI	YATR	9 cut(s)	83, 85, 215, 288, 393, 413, 427, 432, 445
FaqI	GGGAC	2 cut(s)	131, 359
FatI	CATG	2 cut(s)	286, 430
FauNDI	CATATG	1 cut(s)	83
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	3 cut(s)	257, 332, 491
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	1 cut(s)	7
GluI	GCNGC	1 cut(s)	7
HaeIII	GGCC	1 cut(s)	406
HgaI	GACGC	1 cut(s)	54
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	290, 434
HinfI	GANTC	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	176
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	3 cut(s)	160, 308, 472
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	2 cut(s)	266, 352
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	290, 434
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	6 cut(s)	92, 220, 311, 362, 420, 498
LweI	GCATC	4 cut(s)	121, 289, 310, 406
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	102
MbiI	CCGCTC	1 cut(s)	6
MboII	GAAGA	3 cut(s)	19, 63, 275
MhlI	GDGCHC	2 cut(s)	340, 516
MluCI	AATT	2 cut(s)	261, 290
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	5 cut(s)	145, 149, 189, 310, 469
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	285
NdeI	CATATG	1 cut(s)	83
NlaIII	CATG	2 cut(s)	290, 434
NlaIV	GGNNCC	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	102
PagI	TCATGA	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 189
PkrI	GCNGC	1 cut(s)	8
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PpuMI	RGGWCCY	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	347
PspPI	GGNCC	2 cut(s)	346, 404
PspPPI	RGGWCCY	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	470
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	7
Sau96I	GGNCC	2 cut(s)	346, 404
SchI	GAGTC	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	340, 516
SetI	ASST	8 cut(s)	22, 75, 200, 220, 351, 372, 385, 392
SfaNI	GCATC	4 cut(s)	121, 289, 310, 406
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	2 cut(s)	261, 290
SsiI	CCGC	2 cut(s)	6, 187
TaaI	ACNGT	3 cut(s)	160, 308, 472
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	49
TasI	AATT	2 cut(s)	261, 290
TatI	WGTACW	1 cut(s)	34
TauI	GCSGC	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	102
Tsp45I	GTSAC	1 cut(s)	102
TspDTI	ATGAA	5 cut(s)	35, 261, 275, 303, 411
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.