Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0008172

Physical Location & Seq

Genomic Coordinates Forward (+)

51641562 .. 51651150

Gene Structure 9589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG390300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAGCGGCGCAAAACCACCTTCTCTCTTCCTTCAGTTCCTTCTACACTACTTTCATCGAAGAGACACATCAGCGTCCAACGTCTCCCCCATATGGACTTATTTTGTAGAGTCACTGGCTTTTAGGGACGGACAACCCGATGCGACCCTCACTCGTTGGGAGGCAACCGTGAAAAGTGATTTCGGAGACCACGGGCGGAGCGAGAGGTGGCTATCCTGTGTTATAGCTCAAAGAGAAATAAGGAAAAAATGGGATGAACAAAACCAAGAAATTGCAAAGGCTCTTAAGCATCTTCATGAATTTGACCAGAAACACAGTAGAGTGGAGGATGCTAACTTAAAAAGGGCTCGGGAGGACCTGCAAAACAGACTTGATTACCTAAAAAAGCAAGCTGAGCATAAATGTGATCCGATCAACATGAGCTATGTAGAATCAGCGTTACTGCCGGACTATGGGTGCTTTGTTGACTTCGTTAATGAAGCTGTGAACAAGCATCGTCTGGTATTTGTGAGTAGTGCTGGCATTACTGGTCCGGCATTGAGCACTGTTGGGCACCTCGGTACTACATCGATCAAGAATTATAGGAGTGGCCCATGTGTCTCTCCTGCAATGGCTGCTGGTGCTCATTGTGTAGCTGAAGCCCCTGGTGAAAAGCTTGAATACACTTGGTATATTAACTTTTCTCAGTCACTTTTAAACACGAATTCCTCACTCAGCAAATCCGGCTTACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

244

Amino Acids

27.5

Weight (kDa)

7.71

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378641 RchiOBHm_Chr1g0378651
rosa_laevigata	RLG00000026415
rosa_multiflora	Rmu_sc0002395.1_g000017 Rmu_sc0013199.1_g000009
rosa_roxburghii	Rroxscaffold_3G00228460 Rroxscaffold_4G00278940 Rroxscaffold_4G00278950 Rroxscaffold_5G00358580
rosa_samantha	Rh1AG431900 Rh1AG432000 Rh1AG432600 Rh1AG432700 Rh1BG390300 Rh1BG390500 Rh1BG390700 Rh1BG390800 Rh1CG403400 Rh1CG403500 Rh1DG421400 Rh1DG421600 Rh1DG421800 Rh1DG421900
rosa_wichuraiana	Rw1G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	366
AccB1I	GGYRCC	1 cut(s)	552
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	2 cut(s)	6, 196
AclWI	GGATC	1 cut(s)	401
AcsI	RAATTY	2 cut(s)	299, 703
AcuI	CTGAAG	2 cut(s)	17, 657
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	2 cut(s)	93, 452
AflII	CTTAAG	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	659
AjnI	CCWGG	1 cut(s)	643
AluBI	AGCT	6 cut(s)	227, 392, 423, 482, 635, 655
AluI	AGCT	6 cut(s)	227, 392, 423, 482, 635, 655
Alw21I	GWGCWC	2 cut(s)	545, 625
Alw26I	GTCTC	4 cut(s)	57, 88, 180, 604
AlwI	GGATC	1 cut(s)	401
Ama87I	CYCGRG	1 cut(s)	348
AoxI	GGCC	1 cut(s)	589
ApeKI	GCWGC	1 cut(s)	614
ApoI	RAATTY	2 cut(s)	299, 703
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	3 cut(s)	355, 530, 590
AsuHPI	GGTGA	1 cut(s)	659
AvaI	CYCGRG	1 cut(s)	348
AvaII	GGWCC	2 cut(s)	355, 530
BaeGI	GKGCMC	1 cut(s)	555
BanI	GGYRCC	1 cut(s)	552
BanII	GRGCYC	1 cut(s)	349
Bbv12I	GWGCWC	2 cut(s)	545, 625
BbvI	GCAGC	1 cut(s)	601
BciT130I	CCWGG	1 cut(s)	645
BcoDI	GTCTC	4 cut(s)	57, 88, 180, 604
BfrI	CTTAAG	1 cut(s)	284
BfuAI	ACCTGC	1 cut(s)	366
BisI	GCNGC	2 cut(s)	7, 615
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	2 cut(s)	8, 616
Bme1390I	CCNGG	1 cut(s)	645
Bme18I	GGWCC	2 cut(s)	355, 530
BmeT110I	CYCGRG	1 cut(s)	348
BmgT120I	GGNCC	3 cut(s)	355, 530, 590
BmiI	GGNNCC	1 cut(s)	554
BmrFI	CCNGG	1 cut(s)	645
BmsI	GCATC	4 cut(s)	130, 298, 319, 502
Bpu1102I	GCTNAGC	1 cut(s)	393
Bsa29I	ATCGAT	1 cut(s)	569
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	3 cut(s)	190, 556, 643
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 452
Bse1I	ACTGG	2 cut(s)	120, 532
Bse3DI	GCAATG	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	645
BseCI	ATCGAT	1 cut(s)	569
BseDI	CCNNGG	3 cut(s)	190, 556, 643
BseGI	GGATG	2 cut(s)	259, 334
BseLI	CCNNNNNNNGG	2 cut(s)	93, 452
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	3 cut(s)	384, 698, 727
BseNI	ACTGG	2 cut(s)	120, 532
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	1 cut(s)	601
BshFI	GGCC	1 cut(s)	591
BshNI	GGYRCC	1 cut(s)	552
BshVI	ATCGAT	1 cut(s)	569
BsiHKAI	GWGCWC	2 cut(s)	545, 625
BsiHKCI	CYCGRG	1 cut(s)	348
BsiSI	CCGG	3 cut(s)	446, 533, 723
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	93, 452
BsmAI	GTCTC	4 cut(s)	57, 88, 180, 604
BsmBI	CGTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	591
Bso31I	GGTCTC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	348
Bsp1286I	GDGCHC	4 cut(s)	349, 545, 555, 625
Bsp143I	GATC	3 cut(s)	406, 411, 570
Bsp1720I	GCTNAGC	1 cut(s)	393
BspACI	CCGC	2 cut(s)	6, 196
BspANI	GGCC	1 cut(s)	591
BspCNI	CTCAG	3 cut(s)	385, 697, 726
BspDI	ATCGAT	1 cut(s)	569
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	554
BspMI	ACCTGC	1 cut(s)	366
BspPI	GGATC	1 cut(s)	401
BspT107I	GGYRCC	1 cut(s)	552
BspTI	CTTAAG	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	180
BsrBI	CCGCTC	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	615
BsrI	ACTGG	2 cut(s)	120, 532
BssECI	CCNNGG	3 cut(s)	190, 556, 643
BssMI	GATC	3 cut(s)	406, 411, 570
Bst2UI	CCWGG	1 cut(s)	645
Bst4CI	ACNGT	3 cut(s)	169, 317, 547
Bst6I	CTCTTC	2 cut(s)	32, 55
BstAFI	CTTAAG	1 cut(s)	284
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstC8I	GCNNGC	2 cut(s)	390, 520
BstDEI	CTNAG	4 cut(s)	393, 684, 713, 732
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	2 cut(s)	259, 334
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	3 cut(s)	409, 414, 573
BstMAI	GTCTC	4 cut(s)	57, 88, 180, 604
BstMBI	GATC	3 cut(s)	406, 411, 570
BstMWI	GCNNNNNNNGC	4 cut(s)	394, 614, 620, 723
BstNI	CCWGG	1 cut(s)	645
BstSCI	CCNGG	1 cut(s)	643
BstSLI	GKGCMC	1 cut(s)	555
BstV1I	GCAGC	1 cut(s)	601
Bsu15I	ATCGAT	1 cut(s)	569
BsuRI	GGCC	1 cut(s)	591
BsuTUI	ATCGAT	1 cut(s)	569
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	259, 334
BtsIMutI	CAGTG	2 cut(s)	113, 543
BveI	ACCTGC	1 cut(s)	366
Cac8I	GCNNGC	2 cut(s)	390, 520
CciI	TCATGA	1 cut(s)	295
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	3 cut(s)	355, 530, 590
ClaI	ATCGAT	1 cut(s)	569
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	3 cut(s)	296, 418, 594
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	4 cut(s)	393, 684, 713, 732
DpnI	GATC	3 cut(s)	408, 413, 572
DpnII	GATC	3 cut(s)	406, 411, 570
DraI	TTTAAA	1 cut(s)	696
Eam1104I	CTCTTC	2 cut(s)	32, 55
EarI	CTCTTC	2 cut(s)	32, 55
EciI	GGCGGA	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	349
Eco31I	GGTCTC	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	355, 530
Eco57I	CTGAAG	2 cut(s)	17, 657
Eco88I	CYCGRG	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRI	GAATTC	1 cut(s)	703
EcoRII	CCWGG	1 cut(s)	643
EcoT38I	GRGCYC	1 cut(s)	349
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	3 cut(s)	299, 421, 597
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	3 cut(s)	295, 417, 593
FauNDI	CATATG	1 cut(s)	92
Fnu4HI	GCNGC	2 cut(s)	7, 615
FokI	GGATG	2 cut(s)	266, 341
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	2 cut(s)	7, 615
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	2 cut(s)	7, 615
HaeIII	GGCC	1 cut(s)	591
HapII	CCGG	3 cut(s)	446, 533, 723
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	3 cut(s)	299, 421, 597
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	2 cut(s)	110, 431
HpaII	CCGG	3 cut(s)	446, 533, 723
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	2 cut(s)	466, 487
Hpy188I	TCNGA	2 cut(s)	185, 411
Hpy188III	TCNNGA	3 cut(s)	296, 350, 574
Hpy8I	GTNNAC	2 cut(s)	466, 487
HpyAV	CCTTC	3 cut(s)	30, 41, 50
HpyCH4III	ACNGT	3 cut(s)	169, 317, 547
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	3 cut(s)	275, 361, 608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	394, 614, 620, 723
HpyF3I	CTNAG	4 cut(s)	393, 684, 713, 732
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	299, 421, 597
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	406, 411, 570
LmnI	GCTCC	1 cut(s)	198
Lsp1109I	GCAGC	1 cut(s)	601
LweI	GCATC	4 cut(s)	130, 298, 319, 502
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	3 cut(s)	111, 438, 687
MalI	GATC	3 cut(s)	408, 413, 572
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	3 cut(s)	406, 411, 570
MboII	GAAGA	3 cut(s)	19, 72, 284
MhlI	GDGCHC	4 cut(s)	349, 545, 555, 625
MluCI	AATT	4 cut(s)	270, 299, 577, 703
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	7 cut(s)	154, 158, 198, 319, 346, 566, 718
MseI	TTAA	5 cut(s)	285, 338, 474, 675, 695
MslI	CAYNNNNRTG	2 cut(s)	294, 402
MspCI	CTTAAG	1 cut(s)	284
MspI	CCGG	3 cut(s)	446, 533, 723
MspR9I	CCNGG	1 cut(s)	645
MvaI	CCWGG	1 cut(s)	645
MwoI	GCNNNNNNNGC	4 cut(s)	394, 614, 620, 723
NdeI	CATATG	1 cut(s)	92
NdeII	GATC	3 cut(s)	406, 411, 570
NlaIII	CATG	3 cut(s)	299, 421, 597
NlaIV	GGNNCC	1 cut(s)	554
NmuCI	GTSAC	2 cut(s)	111, 687
PagI	TCATGA	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 198
PfeI	GAWTC	1 cut(s)	431
PkrI	GCNGC	2 cut(s)	8, 616
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	355
Psp5II	RGGWCCY	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	1 cut(s)	554
PspPI	GGNCC	3 cut(s)	355, 530, 590
PspPPI	RGGWCCY	1 cut(s)	355
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
RseI	CAYNNNNRTG	2 cut(s)	294, 402
SaqAI	TTAA	5 cut(s)	285, 338, 474, 675, 695
SatI	GCNGC	2 cut(s)	7, 615
Sau3AI	GATC	3 cut(s)	406, 411, 570
Sau96I	GGNCC	3 cut(s)	355, 530, 590
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	645
SduI	GDGCHC	4 cut(s)	349, 545, 555, 625
SfaNI	GCATC	4 cut(s)	130, 298, 319, 502
SinI	GGWCC	2 cut(s)	355, 530
SmiMI	CAYNNNNRTG	2 cut(s)	294, 402
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	4 cut(s)	270, 299, 577, 703
SsiI	CCGC	2 cut(s)	6, 196
StyD4I	CCNGG	1 cut(s)	643
TaaI	ACNGT	3 cut(s)	169, 317, 547
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	58, 569
TasI	AATT	4 cut(s)	270, 299, 577, 703
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	5 cut(s)	285, 338, 474, 675, 695
Tru9I	TTAA	5 cut(s)	285, 338, 474, 675, 695
TscAI	CASTG	2 cut(s)	120, 550
TseFI	GTSAC	2 cut(s)	111, 687
TseI	GCWGC	1 cut(s)	614
Tsp45I	GTSAC	2 cut(s)	111, 687
TspDTI	ATGAA	5 cut(s)	44, 270, 284, 312, 492
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	2 cut(s)	120, 550
Vha464I	CTTAAG	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	355, 530
XapI	RAATTY	2 cut(s)	299, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.