Rroxscaffold_3G00228460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008172
Physical Location & Seq
Forward (+)
12918278 .. 12920833
2556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00228460.1

Sequence Viewer

Length: 417 bp
ATGGGCCGTGGAGGCCCTCCCAATGTATGGTTCAAAGATGGTGGTGCTGGCCCTAGTGGTCAAGGAAACAAAGTGCAAAAGGCACCTAAGAACCCTTCGATCAAAAAAGAAAGAGTTGGCAATGAACCATGCTATAGGTGTGGAGTTATTGGGTATTGGTATAAGAACTACCAAGCAAGGAACAGAATAGCAGCCACTTACAAGAGATATAATAATATTAAGTTATTAACTGCCATTTTCCAAGTGAAACAACGATATTGGGTGGATTCCACAATTCTACCCCAGTTTGCTTCTCCTGCGAAATTCTCCAGTTCCCGGCTATCTTCGACTGTGAAATTGGCTCTATTAGGAGCGCCTCGAGTTACCGATCATCTTCCCTCAAGACTTCTAGCTGAAATTTCCACGTTTGGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

138

Amino Acids

15.38

Weight (kDa)

10.42

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 82
AccB7I CCANNNNNTGG 1 cut(s) 27
AcsI RAATTY 2 cut(s) 302, 396
AfiI CCNNNNNNNGG 2 cut(s) 27, 315
AgsI TTSAA 1 cut(s) 34
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 1 cut(s) 392
AluI AGCT 1 cut(s) 392
Ama87I CYCGRG 1 cut(s) 357
AoxI GGCC 3 cut(s) 4, 13, 49
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 2 cut(s) 302, 396
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 3 cut(s) 4, 14, 50
AsuC2I CCSGG 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 357
BanI GGYRCC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 203
BccI CCATC 1 cut(s) 32
BcnI CCSGG 1 cut(s) 316
BfaI CTAG 2 cut(s) 54, 389
BfmI CTRYAG 1 cut(s) 133
BfoI RGCGCY 1 cut(s) 356
BglI GCCNNNNNGGC 1 cut(s) 12
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 357
BmgT120I GGNCC 3 cut(s) 4, 14, 50
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 316
BmrI ACTGGG 1 cut(s) 277
BmuI ACTGGG 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 364
BpuMI CCSGG 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 7
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 315
Bse1I ACTGG 2 cut(s) 283, 309
Bse3DI GCAATG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 7
BseLI CCNNNNNNNGG 2 cut(s) 27, 315
BseMI GCAATG 1 cut(s) 127
BseNI ACTGG 2 cut(s) 283, 309
BseXI GCAGC 1 cut(s) 203
BshFI GGCC 3 cut(s) 6, 15, 51
BshNI GGYRCC 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 357
BsiSI CCGG 1 cut(s) 316
BslI CCNNNNNNNGG 2 cut(s) 27, 315
BsnI GGCC 3 cut(s) 6, 15, 51
BsoBI CYCGRG 1 cut(s) 357
Bsp143I GATC 2 cut(s) 99, 367
BspANI GGCC 3 cut(s) 6, 15, 51
BspLI GGNNCC 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 127
BsrI ACTGG 2 cut(s) 283, 309
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 2 cut(s) 99, 367
Bst4CI ACNGT 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 87
BstDSI CCRYGG 1 cut(s) 7
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 2 cut(s) 102, 370
BstMBI GATC 2 cut(s) 99, 367
BstMWI GCNNNNNNNGC 2 cut(s) 12, 296
BstSCI CCNGG 1 cut(s) 314
BstSFI CTRYAG 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 203
BsuRI GGCC 3 cut(s) 6, 15, 51
BtgI CCRYGG 1 cut(s) 7
Cac8I GCNNGC 1 cut(s) 49
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 3 cut(s) 4, 14, 50
CspCI CAANNNNNGTGG 2 cut(s) 22, 57
CviAII CATG 1 cut(s) 129
CviJI RGCY 7 cut(s) 6, 15, 51, 194, 319, 341, 392
CviKI_1 RGCY 7 cut(s) 6, 15, 51, 194, 319, 341, 392
DdeI CTNAG 1 cut(s) 87
DpnI GATC 2 cut(s) 101, 369
DpnII GATC 2 cut(s) 99, 367
Eco88I CYCGRG 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 14
FaeI CATG 1 cut(s) 132
FaiI YATR 5 cut(s) 28, 130, 135, 162, 210
FatI CATG 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 2 cut(s) 54, 389
GlaI GCGC 1 cut(s) 354
GluI GCNGC 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 292
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 3 cut(s) 6, 15, 51
HapII CCGG 1 cut(s) 316
HhaI GCGC 1 cut(s) 355
Hin1II CATG 1 cut(s) 132
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HinfI GANTC 1 cut(s) 266
HpaII CCGG 1 cut(s) 316
Hpy188III TCNNGA 1 cut(s) 381
HpyAV CCTTC 2 cut(s) 105, 405
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 1 cut(s) 404
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 296
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 404
Hsp92II CATG 1 cut(s) 132
HspAI GCGC 1 cut(s) 353
Kzo9I GATC 2 cut(s) 99, 367
LmnI GCTCC 1 cut(s) 350
LpnPI CCDG 5 cut(s) 33, 296, 309, 322, 329
Lsp1109I GCAGC 1 cut(s) 203
MaeI CTAG 2 cut(s) 54, 389
MaeII ACGT 1 cut(s) 404
MaeIII GTNAC 1 cut(s) 361
MalI GATC 2 cut(s) 101, 369
MboI GATC 2 cut(s) 99, 367
MboII GAAGA 2 cut(s) 315, 365
MluCI AATT 4 cut(s) 273, 302, 335, 396
MnlI CCTC 4 cut(s) 5, 27, 366, 388
MseI TTAA 2 cut(s) 219, 227
MspI CCGG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 316
MwoI GCNNNNNNNGC 2 cut(s) 12, 296
NciI CCSGG 1 cut(s) 316
NdeII GATC 2 cut(s) 99, 367
NlaIII CATG 1 cut(s) 132
NlaIV GGNNCC 1 cut(s) 84
PaeR7I CTCGAG 1 cut(s) 357
PfeI GAWTC 1 cut(s) 266
PflMI CCANNNNNTGG 1 cut(s) 27
PkrI GCNGC 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 3 cut(s) 4, 14, 50
PspXI VCTCGAGB 1 cut(s) 357
SaqAI TTAA 2 cut(s) 219, 227
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 2 cut(s) 99, 367
Sau96I GGNCC 3 cut(s) 4, 14, 50
ScrFI CCNGG 1 cut(s) 316
SetI ASST 5 cut(s) 88, 140, 394, 407, 416
SfcI CTRYAG 1 cut(s) 133
SfiI GGCCNNNNNGGCC 1 cut(s) 12
Sfr274I CTCGAG 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 357
SmlI CTYRAG 2 cut(s) 357, 379
SmoI CTYRAG 2 cut(s) 357, 379
Sse9I AATT 4 cut(s) 273, 302, 335, 396
SspI AATATT 1 cut(s) 217
SspMI CTAG 2 cut(s) 54, 389
StyD4I CCNGG 1 cut(s) 314
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 1 cut(s) 407
TaqI TCGA 3 cut(s) 98, 326, 358
TasI AATT 4 cut(s) 273, 302, 335, 396
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 2 cut(s) 219, 227
Tru9I TTAA 2 cut(s) 219, 227
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 138
Van91I CCANNNNNTGG 1 cut(s) 27
XapI RAATTY 2 cut(s) 302, 396
XhoI CTCGAG 1 cut(s) 357
XspI CTAG 2 cut(s) 54, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.