Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008172

Physical Location & Seq

Genomic Coordinates Forward (+)

65911794 .. 65912375

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG432700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGTTATGGAGAATCAGCGTTACTACCGGACTATGGGTGCTTTGTTGACCTCGTTAATGAAGCTGTGAACAAGCATCGTCTGGTATTTGTGAGTAATGCTGGCAATAGTGGTCCGGCATTGAGCACTGTTGGGCACCTTGGTACTACATCGATCAAGCAATATAGGAGTGGTGCACATGTCTCTCCTACAATGGCTGCTGGTGCTCATTGTGTAGATGAAGCCCCTGGTGAAGGGTTTGAATACACTTGGTCTAGCCGAGGACCAACTGCTGCCGATGGAGATCTTGGTGTCAAGTGTCTGTATAAGTGCTCGGCGCAGCTGTTGCTCCTGTTCCTAGATGGACTCTCCAACGACAGATGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004175 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0008240 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016567 GO:0016604 GO:0016787 GO:0017171 GO:0019538 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044451 GO:0044464 GO:0070011 GO:0070013 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S8 TPPII

Protein Analysis

122

Amino Acids

12.82

Weight (kDa)

5.39

Isoelectric Point (pI)

18.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008172)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0378641 RchiOBHm_Chr1g0378651
rosa_laevigata	RLG00000026415
rosa_multiflora	Rmu_sc0002395.1_g000017 Rmu_sc0013199.1_g000009
rosa_roxburghii	Rroxscaffold_3G00228460 Rroxscaffold_4G00278940 Rroxscaffold_4G00278950 Rroxscaffold_5G00358580
rosa_samantha	Rh1AG431900 Rh1AG432000 Rh1AG432600 Rh1AG432700 Rh1BG390300 Rh1BG390500 Rh1BG390700 Rh1BG390800 Rh1CG403400 Rh1CG403500 Rh1DG421400 Rh1DG421600 Rh1DG421800 Rh1DG421900
rosa_wichuraiana	Rw1G037830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	2 cut(s)	35, 233
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	2 cut(s)	65, 322
AluI	AGCT	2 cut(s)	65, 322
Alw21I	GWGCWC	4 cut(s)	128, 178, 208, 314
Alw26I	GTCTC	1 cut(s)	187
Alw44I	GTGCAC	1 cut(s)	174
ApaLI	GTGCAC	1 cut(s)	174
ApeKI	GCWGC	3 cut(s)	197, 272, 319
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	2 cut(s)	113, 263
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	2 cut(s)	113, 263
BaeGI	GKGCMC	2 cut(s)	138, 178
BanI	GGYRCC	1 cut(s)	135
Bbv12I	GWGCWC	4 cut(s)	128, 178, 208, 314
BbvI	GCAGC	3 cut(s)	184, 259, 331
BccI	CCATC	2 cut(s)	272, 335
BciT130I	CCWGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	2 cut(s)	255, 338
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	3 cut(s)	198, 273, 320
BlsI	GCNGC	3 cut(s)	199, 274, 321
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	2 cut(s)	113, 263
BmgT120I	GGNCC	2 cut(s)	113, 263
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	2 cut(s)	85, 350
Bsa29I	ATCGAT	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	3 cut(s)	139, 226, 259
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 233
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	228
BseCI	ATCGAT	1 cut(s)	152
BseDI	CCNNGG	3 cut(s)	139, 226, 259
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	2 cut(s)	35, 233
BseSI	GKGCMC	2 cut(s)	138, 178
BseXI	GCAGC	3 cut(s)	184, 259, 331
BshNI	GGYRCC	1 cut(s)	135
BshVI	ATCGAT	1 cut(s)	152
BsiHKAI	GWGCWC	4 cut(s)	128, 178, 208, 314
BsiSI	CCGG	2 cut(s)	29, 116
BslI	CCNNNNNNNGG	2 cut(s)	35, 233
BsmAI	GTCTC	1 cut(s)	187
Bsp1286I	GDGCHC	5 cut(s)	128, 138, 178, 208, 314
Bsp143I	GATC	2 cut(s)	153, 283
BspDI	ATCGAT	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	365
BspLI	GGNNCC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	135
BssECI	CCNNGG	3 cut(s)	139, 226, 259
BssMI	GATC	2 cut(s)	153, 283
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	130
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	103
BstENI	CCTNNNNNAGG	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	2 cut(s)	156, 286
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	2 cut(s)	153, 283
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 325
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	226
BstSLI	GKGCMC	2 cut(s)	138, 178
BstV1I	GCAGC	3 cut(s)	184, 259, 331
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
Bsu15I	ATCGAT	1 cut(s)	152
BsuTUI	ATCGAT	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	103
CciI	TCATGA	1 cut(s)	365
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	113, 263
ClaI	ATCGAT	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	2 cut(s)	179, 366
CviJI	RGCY	5 cut(s)	65, 197, 224, 258, 322
CviKI_1	RGCY	5 cut(s)	65, 197, 224, 258, 322
CviQI	GTAC	1 cut(s)	144
DpnI	GATC	2 cut(s)	155, 285
DpnII	GATC	2 cut(s)	153, 283
Eco130I	CCWWGG	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	113, 263
EcoNI	CCTNNNNNAGG	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	2 cut(s)	182, 369
FaiI	YATR	6 cut(s)	9, 36, 165, 180, 306, 367
FatI	CATG	2 cut(s)	178, 365
Fnu4HI	GCNGC	3 cut(s)	198, 273, 320
Fsp4HI	GCNGC	3 cut(s)	198, 273, 320
FspBI	CTAG	2 cut(s)	255, 338
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	3 cut(s)	198, 273, 320
HapII	CCGG	2 cut(s)	29, 116
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	2 cut(s)	182, 369
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	14, 345
HpaII	CCGG	2 cut(s)	29, 116
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	3 cut(s)	49, 70, 176
Hpy188III	TCNNGA	1 cut(s)	366
Hpy8I	GTNNAC	3 cut(s)	49, 70, 176
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 325
Hsp92II	CATG	2 cut(s)	182, 369
HspAI	GCGC	1 cut(s)	317
Kzo9I	GATC	2 cut(s)	153, 283
LmnI	GCTCC	1 cut(s)	333
LpnPI	CCDG	8 cut(s)	42, 68, 87, 129, 186, 213, 240, 344
Lsp1109I	GCAGC	3 cut(s)	184, 259, 331
LweI	GCATC	2 cut(s)	85, 350
MaeI	CTAG	2 cut(s)	255, 338
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	2 cut(s)	155, 285
MboI	GATC	2 cut(s)	153, 283
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	5 cut(s)	128, 138, 178, 208, 314
MlyI	GAGTC	1 cut(s)	339
MnlI	CCTC	2 cut(s)	62, 254
MseI	TTAA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	2 cut(s)	29, 116
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	203, 325
NdeII	GATC	2 cut(s)	153, 283
NlaIII	CATG	2 cut(s)	182, 369
NlaIV	GGNNCC	1 cut(s)	137
NmeAIII	GCCGAG	2 cut(s)	284, 293
NspI	RCATGY	1 cut(s)	182
PagI	TCATGA	1 cut(s)	365
PciI	ACATGT	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	199, 274, 321
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
PscI	ACATGT	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	2 cut(s)	113, 263
PsuI	RGATCY	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	322
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	3 cut(s)	198, 273, 320
Sau3AI	GATC	2 cut(s)	153, 283
Sau96I	GGNCC	2 cut(s)	113, 263
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	5 cut(s)	128, 138, 178, 208, 314
SetI	ASST	4 cut(s)	54, 67, 141, 324
SfaNI	GCATC	2 cut(s)	85, 350
SinI	GGWCC	2 cut(s)	113, 263
SspMI	CTAG	2 cut(s)	255, 338
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	3 cut(s)	197, 272, 319
TspDTI	ATGAA	2 cut(s)	75, 234
TspRI	CASTG	1 cut(s)	133
VneI	GTGCAC	1 cut(s)	174
VpaK11BI	GGWCC	2 cut(s)	113, 263
XagI	CCTNNNNNAGG	1 cut(s)	231
XceI	RCATGY	1 cut(s)	182
XspI	CTAG	2 cut(s)	255, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.