Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004685

Physical Location & Seq

Genomic Coordinates Forward (+)

66820702 .. 66821975

Gene Structure 1274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCGTGGACCCAACAAAGCTAAATCTAAATACAAAGGATGCAACTTAGATGACGAAGATGAATGGCATCAATTTCGGAATGCTGTTCGTGCTACAATCAGAGAAACCCCACCAACTACAGTCAGTAGAGGGCGGTCTCCTTCTCCACAACCTCAAAGACCTGCAGTTTTTTCGTTTACATCTACCATGCCCAAGAAAGAATTAGATAAGCGAACAGTTTCACCTCATCGGTTTCCACTTTTACGGTCTGGATCTCTTGCAAGTAGGCCGACGACTCCAAGCAAAAGTCAGTCAACCACCCCAAACTCAAGTAGACCGACGACTCCAAATCTTTCTAATGCAAGACGGCGGTACCCTTCAGAGCCTCGAAAATCAGCTTCAATGCGGCTACCAGCTGAAAGAGATAATGGCAGAGAGGCTGAACAATACCCCAGCAAAAGTAAACGCCTCCTCAAAGCCTTGCTTAGCCGGCGCAAGTCAAAGAAAGATGACATGTTATACACTTACTTGGATGAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0015630 GO:0016043 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464 GO:0048364 GO:0048468 GO:0048731 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

19.8

Weight (kDa)

10.64

Isoelectric Point (pI)

67.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49290 AT3G49290 AT5G24310 AT5G24310 AT5G24310 AT5G24310
fragaria_vesca	FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960 FvH4_7g31960
malus_domestica	MD01G1222400.v1.1 MD07G1293000.v1.1
prunus_persica	Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1 Prupe.2G312800_v2.0.a1
pyrus_communis	pycom01g23180
rosa_chinensis	RchiOBHm_Chr1g0381451 RchiOBHm_Chr1g0381461
rosa_laevigata	RLG00000026231
rosa_multiflora	Rmu_sc0006872.1_g000025
rosa_roxburghii	Rroxscaffold_4G00278660
rosa_rugosa	Rorug01G0428500 Rorug01G0428600 Rorug01G0428700
rosa_samantha	Rh1AG451900 Rh1BG408900 Rh1CG423500 Rh1DG440200
rosa_wichuraiana	Rw1G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	169
Acc65I	GGTACC	1 cut(s)	351
AccB1I	GGYRCC	1 cut(s)	351
AccI	GTMKAC	1 cut(s)	313
AciI	CCGC	3 cut(s)	133, 349, 385
AclWI	GGATC	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	1 cut(s)	353
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	1 cut(s)	381
AluBI	AGCT	3 cut(s)	20, 377, 395
AluI	AGCT	3 cut(s)	20, 377, 395
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	259
AoxI	GGCC	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	217
Asp718I	GGTACC	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	8
AsuHPI	GGTGA	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	8
BaeI	ACNNNNGTAYC	2 cut(s)	335, 368
BanI	GGYRCC	1 cut(s)	351
BceAI	ACGGC	1 cut(s)	362
BcgI	CGANNNNNNTGC	4 cut(s)	56, 90, 153, 187
BcoDI	GTCTC	1 cut(s)	141
BfmI	CTRYAG	2 cut(s)	117, 162
BfuAI	ACCTGC	1 cut(s)	169
BisI	GCNGC	1 cut(s)	386
BlpI	GCTNAGC	1 cut(s)	464
BlsI	GCNGC	1 cut(s)	387
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	8
BmiI	GGNNCC	2 cut(s)	10, 353
BmsI	GCATC	2 cut(s)	29, 76
Bpu1102I	GCTNAGC	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	292
BsaI	GGTCTC	1 cut(s)	141
Bse118I	RCCGGY	1 cut(s)	468
BseGI	GGATG	2 cut(s)	44, 517
BseRI	GAGGAG	1 cut(s)	440
BseYI	CCCAGC	1 cut(s)	431
BshFI	GGCC	1 cut(s)	268
BshNI	GGYRCC	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	268
Bso31I	GGTCTC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	251
Bsp1720I	GCTNAGC	1 cut(s)	464
BspACI	CCGC	3 cut(s)	133, 349, 385
BspANI	GGCC	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	10, 353
BspMAI	CTGCAG	1 cut(s)	166
BspMI	ACCTGC	1 cut(s)	169
BspPI	GGATC	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	351
BspTNI	GGTCTC	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	468
BssAI	RCCGGY	1 cut(s)	468
BssMI	GATC	1 cut(s)	251
Bst4CI	ACNGT	3 cut(s)	121, 217, 246
BstC8I	GCNNGC	1 cut(s)	470
BstDEI	CTNAG	2 cut(s)	46, 464
BstF5I	GGATG	2 cut(s)	44, 517
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	1 cut(s)	254
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 469
BstNSI	RCATGY	1 cut(s)	496
BstSFI	CTRYAG	2 cut(s)	117, 162
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	44, 517
BveI	ACCTGC	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	470
CfoI	GCGC	1 cut(s)	474
Cfr10I	RCCGGY	1 cut(s)	468
Cfr13I	GGNCC	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	2 cut(s)	187, 493
CviJI	RGCY	9 cut(s)	20, 268, 364, 377, 388, 395, 419, 458, 468
CviKI_1	RGCY	9 cut(s)	20, 268, 364, 377, 388, 395, 419, 458, 468
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	2 cut(s)	46, 464
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	342
FaeI	CATG	2 cut(s)	190, 496
FaiI	YATR	3 cut(s)	188, 494, 499
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FatI	CATG	2 cut(s)	186, 492
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	1 cut(s)	386
FokI	GGATG	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	386
GlaI	GCGC	1 cut(s)	473
GluI	GCNGC	1 cut(s)	386
GsaI	CCCAGC	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	1 cut(s)	469
HhaI	GCGC	1 cut(s)	474
Hin1II	CATG	2 cut(s)	190, 496
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	274, 322
HpaII	CCGG	1 cut(s)	469
HphI	GGTGA	1 cut(s)	213
Hpy166II	GTNNAC	5 cut(s)	8, 177, 294, 314, 443
Hpy188I	TCNGA	3 cut(s)	78, 101, 361
Hpy188III	TCNNGA	1 cut(s)	249
Hpy8I	GTNNAC	5 cut(s)	8, 177, 294, 314, 443
Hpy99I	CGWCG	2 cut(s)	274, 322
HpyAV	CCTTC	2 cut(s)	150, 366
HpyCH4III	ACNGT	3 cut(s)	121, 217, 246
HpyCH4V	TGCA	4 cut(s)	42, 164, 260, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 469
HpyF3I	CTNAG	2 cut(s)	46, 464
Hsp92II	CATG	2 cut(s)	190, 496
HspAI	GCGC	1 cut(s)	472
KpnI	GGTACC	1 cut(s)	355
KroI	GCCGGC	1 cut(s)	468
KroNI	GCCGGC	1 cut(s)	470
Kzo9I	GATC	1 cut(s)	251
LpnPI	CCDG	5 cut(s)	174, 234, 405, 445, 482
LweI	GCATC	2 cut(s)	29, 76
MalI	GATC	1 cut(s)	253
MboI	GATC	1 cut(s)	251
MboII	GAAGA	1 cut(s)	68
MflI	RGATCY	1 cut(s)	251
MluCI	AATT	2 cut(s)	71, 200
MlyI	GAGTC	2 cut(s)	268, 316
MnlI	CCTC	7 cut(s)	122, 162, 234, 375, 409, 458, 461
MroNI	GCCGGC	1 cut(s)	468
MroXI	GAANNNNTTC	1 cut(s)	217
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	1 cut(s)	469
Mva1269I	GAATGC	1 cut(s)	85
MwoI	GCNNNNNNNGC	2 cut(s)	89, 469
NaeI	GCCGGC	1 cut(s)	470
NdeII	GATC	1 cut(s)	251
NgoMIV	GCCGGC	1 cut(s)	468
NlaIII	CATG	2 cut(s)	190, 496
NlaIV	GGNNCC	2 cut(s)	10, 353
NspI	RCATGY	1 cut(s)	496
PciI	ACATGT	1 cut(s)	492
PctI	GAATGC	1 cut(s)	85
PdiI	GCCGGC	1 cut(s)	470
PdmI	GAANNNNTTC	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	387
PleI	GAGTC	2 cut(s)	268, 316
PpsI	GAGTC	2 cut(s)	268, 316
PscI	ACATGT	1 cut(s)	492
PspFI	CCCAGC	1 cut(s)	431
PspN4I	GGNNCC	2 cut(s)	10, 353
PspPI	GGNCC	1 cut(s)	8
PstI	CTGCAG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	251
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	1 cut(s)	251
Sau96I	GGNCC	1 cut(s)	8
SchI	GAGTC	2 cut(s)	268, 316
SetI	ASST	6 cut(s)	22, 154, 163, 226, 379, 397
SfaNI	GCATC	2 cut(s)	29, 76
SfcI	CTRYAG	2 cut(s)	117, 162
SinI	GGWCC	1 cut(s)	8
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	2 cut(s)	71, 200
SsiI	CCGC	3 cut(s)	133, 349, 385
TaaI	ACNGT	3 cut(s)	121, 217, 246
TaqI	TCGA	1 cut(s)	367
TaqII	GACCGA	1 cut(s)	331
TasI	AATT	2 cut(s)	71, 200
TauI	GCSGC	1 cut(s)	388
TspDTI	ATGAA	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	8
XceI	RCATGY	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.