RchiOBHm_Chr1g0384271

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012676
Physical Location & Seq
Reverse (-)
68226166 .. 68227655
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
ATGTCGATCCTAAGACCCTCATCGGTGCCGTCCACCGTCCAAGACTGCTGGGACTGTATGCTCCTTGGCCCACCCAACTGCAACAACTTAGAATCCGCAGAAGTCAGCCCCTCCGGCCTCTTCGTATTCCCCGCCGGCAGCTCTATCTCCATCATCGACACCCGTTCAATGCATCTCGTCGTCTCCCTCCCCATGCCTCCCCCTCTCCCCTTCCCAATCCTACTCTGCCACCGCCACGTCATCACTATCCCCCTTCGTCACCTCCATCCGGTGGACCCAAATCCTTCTCGGCCGCGACCTCCTCTCCATCGAGCCTTCCATCTCCCACCTCCTCCTTGCCGCCAAGGCCGCATCGGCCACCTCGACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.56

Weight (kDa)

8.43

Isoelectric Point (pI)

85.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR11_1st PF23751 23 - 69 9.4e-16 WDR11 first beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AccB7I CCANNNNNTGG 1 cut(s) 271
AccII CGCG 1 cut(s) 295
AciI CCGC 6 cut(s) 96, 132, 232, 293, 340, 349
AcoI YGGCCR 2 cut(s) 290, 355
AfiI CCNNNNNNNGG 2 cut(s) 268, 271
AgsI TTSAA 1 cut(s) 168
AjiI CACGTC 1 cut(s) 238
AluBI AGCT 1 cut(s) 141
AluI AGCT 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 187
AoxI GGCC 5 cut(s) 67, 115, 290, 346, 355
ApeKI GCWGC 1 cut(s) 138
AspS9I GGNCC 2 cut(s) 68, 274
AsuHPI GGTGA 1 cut(s) 251
AvaII GGWCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 150
BccI CCATC 4 cut(s) 158, 273, 315, 327
BceAI ACGGC 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 187
BfaI CTAG 1 cut(s) 370
BglI GCCNNNNNGGC 3 cut(s) 114, 345, 354
BisI GCNGC 4 cut(s) 139, 293, 340, 349
BlsI GCNGC 4 cut(s) 140, 294, 341, 350
Bme18I GGWCC 1 cut(s) 274
BmgBI CACGTC 1 cut(s) 238
BmgT120I GGNCC 2 cut(s) 68, 274
BmiI GGNNCC 2 cut(s) 27, 276
BmsI GCATC 2 cut(s) 181, 360
BsaJI CCNNGG 2 cut(s) 64, 343
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 271
Bse118I RCCGGY 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 64, 343
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 2 cut(s) 268, 271
BseRI GAGGAG 2 cut(s) 291, 321
BseX3I CGGCCG 1 cut(s) 290
BseXI GCAGC 1 cut(s) 150
BseYI CCCAGC 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 295
Bsh1285I CGRYCG 1 cut(s) 293
BshFI GGCC 5 cut(s) 69, 117, 292, 348, 357
BshNI GGYRCC 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 293
BsiSI CCGG 3 cut(s) 114, 135, 269
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 2 cut(s) 268, 271
BsmAI GTCTC 1 cut(s) 187
BsmBI CGTCTC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 5 cut(s) 69, 117, 292, 348, 357
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 6 cut(s) 96, 132, 232, 293, 340, 349
BspANI GGCC 5 cut(s) 69, 117, 292, 348, 357
BspFNI CGCG 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 27, 276
BspT107I GGYRCC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 64, 343
BssMI GATC 1 cut(s) 6
BssT1I CCWWGG 2 cut(s) 64, 343
Bst4CI ACNGT 2 cut(s) 37, 56
Bst6I CTCTTC 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 2 cut(s) 11, 88
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 1 cut(s) 295
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 1 cut(s) 6
BstMCI CGRYCG 1 cut(s) 293
BstMWI GCNNNNNNNGC 4 cut(s) 114, 345, 348, 354
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 150
BstZI CGGCCG 1 cut(s) 290
BsuRI GGCC 5 cut(s) 69, 117, 292, 348, 357
BtrI CACGTC 1 cut(s) 238
BtsCI GGATG 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 68, 274
CviAII CATG 1 cut(s) 193
CviJI RGCY 8 cut(s) 69, 108, 117, 141, 292, 314, 348, 357
CviKI_1 RGCY 8 cut(s) 69, 108, 117, 141, 292, 314, 348, 357
DdeI CTNAG 2 cut(s) 11, 88
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
EaeI YGGCCR 2 cut(s) 290, 355
EagI CGGCCG 1 cut(s) 290
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
EclXI CGGCCG 1 cut(s) 290
Eco130I CCWWGG 2 cut(s) 64, 343
Eco47I GGWCC 1 cut(s) 274
Eco52I CGGCCG 1 cut(s) 290
EcoT14I CCWWGG 2 cut(s) 64, 343
EcoT22I ATGCAT 1 cut(s) 174
ErhI CCWWGG 2 cut(s) 64, 343
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 1 cut(s) 196
FaiI YATR 2 cut(s) 59, 194
FaqI GGGAC 1 cut(s) 65
FatI CATG 1 cut(s) 192
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 4 cut(s) 139, 293, 340, 349
FokI GGATG 1 cut(s) 252
Fsp4HI GCNGC 4 cut(s) 139, 293, 340, 349
FspBI CTAG 1 cut(s) 370
GluI GCNGC 4 cut(s) 139, 293, 340, 349
GsaI CCCAGC 1 cut(s) 52
HaeIII GGCC 5 cut(s) 69, 117, 292, 348, 357
HapII CCGG 3 cut(s) 114, 135, 269
Hin1II CATG 1 cut(s) 196
HinfI GANTC 1 cut(s) 92
HpaII CCGG 3 cut(s) 114, 135, 269
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 2 cut(s) 33, 274
Hpy8I GTNNAC 2 cut(s) 33, 274
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 4 cut(s) 220, 263, 294, 325
HpyCH4III ACNGT 2 cut(s) 37, 56
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 2 cut(s) 81, 172
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 345, 348, 354
HpyF3I CTNAG 2 cut(s) 11, 88
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 1 cut(s) 196
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 4 cut(s) 34, 127, 148, 282
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 2 cut(s) 181, 360
MaeI CTAG 1 cut(s) 370
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 257
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 1 cut(s) 112
Mph1103I ATGCAT 1 cut(s) 174
MroNI GCCGGC 1 cut(s) 134
MspI CCGG 3 cut(s) 114, 135, 269
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 4 cut(s) 114, 345, 348, 354
NaeI GCCGGC 1 cut(s) 136
NdeII GATC 1 cut(s) 6
NgoMIV GCCGGC 1 cut(s) 134
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 2 cut(s) 27, 276
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 257
NsiI ATGCAT 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PdiI GCCGGC 1 cut(s) 136
PfeI GAWTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 271
PkrI GCNGC 4 cut(s) 140, 294, 341, 350
PspFI CCCAGC 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 27, 276
PspPI GGNCC 2 cut(s) 68, 274
SatI GCNGC 4 cut(s) 139, 293, 340, 349
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 2 cut(s) 68, 274
SetI ASST 7 cut(s) 143, 240, 264, 301, 331, 363, 369
SfaNI GCATC 2 cut(s) 181, 360
SfiI GGCCNNNNNGGCC 1 cut(s) 354
SinI GGWCC 1 cut(s) 274
SsiI CCGC 6 cut(s) 96, 132, 232, 293, 340, 349
SspMI CTAG 1 cut(s) 370
StyI CCWWGG 2 cut(s) 64, 343
TaaI ACNGT 2 cut(s) 37, 56
TaiI ACGT 1 cut(s) 240
TaqI TCGA 4 cut(s) 5, 156, 310, 363
TauI GCSGC 3 cut(s) 295, 342, 351
TfiI GAWTC 1 cut(s) 92
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 1 cut(s) 138
Tsp45I GTSAC 1 cut(s) 257
Van91I CCANNNNNTGG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 274
XspI CTAG 1 cut(s) 370
Zsp2I ATGCAT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.