Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0012676

Physical Location & Seq

Genomic Coordinates Reverse (-)

37543032 .. 37543626

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024621

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGCAACTGCAAATATCACATAATCAACTGGATCTCCCAGATTCTTTCTATTTCGCCGTTGTCTCTCTCTGCCAACTCTGGTCTCCCGCAGATTACTGTCACCGCCGACGGATTCCATTGCTTCTCCAATAGATCGACAGCGACGACTTCGTCTCCGGCTTCGAAGGCAAGTCCAACCTCTTATGGCAGCTTGAACTGGATCTCCGACTCTCTCCCCTTCCTCTCAAGTCCTGATCACTGCTTGATGATTGTGATCGGAAAGGGCGCCATTTTGCGACTGTATCTCTGCAGCAACAGCTCCGACGCGTCTCATGCCTCCACCGCCGCCGTCCCCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

11.89

Weight (kDa)

7.72

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012676)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0384271
rosa_laevigata	RLG00000005256 RLG00000008674 RLG00000018852 RLG00000024621 RLG00000033824 RLG00000034611
rosa_multiflora	Rmu_sc0000429.1_g000082
rosa_roxburghii	Rroxscaffold_1G00016470 Rroxscaffold_2G00081350 Rroxscaffold_2G00118670 Rroxscaffold_7G00193240
rosa_samantha	Rh1BG095100 Rh1BG176900 Rh1BG177000 Rh1DG206400 Rh1DG206500 Rh6AG128600 Rh7CG266500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	151
AccB1I	GGYRCC	1 cut(s)	266
AccII	CGCG	1 cut(s)	308
AciI	CCGC	4 cut(s)	89, 105, 324, 327
AclWI	GGATC	2 cut(s)	41, 209
AcyI	GRCGYC	1 cut(s)	267
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	196
AloI	GAACNNNNNNTCC	2 cut(s)	188, 220
AluBI	AGCT	2 cut(s)	192, 300
AluI	AGCT	2 cut(s)	192, 300
Alw26I	GTCTC	4 cut(s)	69, 89, 159, 315
AlwI	GGATC	2 cut(s)	41, 209
ApeKI	GCWGC	2 cut(s)	189, 291
AspLEI	GCGC	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	94
AsuII	TTCGAA	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	266
BbvI	GCAGC	2 cut(s)	201, 303
BceAI	ACGGC	2 cut(s)	43, 314
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	4 cut(s)	69, 89, 159, 315
BfmI	CTRYAG	1 cut(s)	289
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	3 cut(s)	190, 292, 327
BlsI	GCNGC	3 cut(s)	191, 293, 328
BmiI	GGNNCC	1 cut(s)	268
Bpu14I	TTCGAA	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	89
BsaXI	ACNNNNNCTCC	6 cut(s)	20, 50, 139, 169, 188, 218
Bse1I	ACTGG	2 cut(s)	35, 203
Bse3DI	GCAATG	1 cut(s)	118
Bse8I	GATNNNNATC	1 cut(s)	254
BseJI	GATNNNNATC	1 cut(s)	254
BseMI	GCAATG	1 cut(s)	118
BseNI	ACTGG	2 cut(s)	35, 203
BseXI	GCAGC	2 cut(s)	201, 303
Bsh1236I	CGCG	1 cut(s)	308
BshNI	GGYRCC	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	317
BsmAI	GTCTC	4 cut(s)	69, 89, 159, 315
BsmBI	CGTCTC	2 cut(s)	159, 315
BsmFI	GGGAC	1 cut(s)	317
Bso31I	GGTCTC	1 cut(s)	89
Bsp119I	TTCGAA	1 cut(s)	164
Bsp143I	GATC	5 cut(s)	33, 134, 201, 235, 255
BspACI	CCGC	4 cut(s)	89, 105, 324, 327
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	1 cut(s)	268
BspMAI	CTGCAG	1 cut(s)	293
BspPI	GGATC	2 cut(s)	41, 209
BspT104I	TTCGAA	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	2 cut(s)	35, 203
BssMI	GATC	5 cut(s)	33, 134, 201, 235, 255
BssNI	GRCGYC	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	100, 282
BstACI	GRCGYC	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	164
BstFNI	CGCG	1 cut(s)	308
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	5 cut(s)	36, 137, 204, 238, 258
BstMAI	GTCTC	4 cut(s)	69, 89, 159, 315
BstMBI	GATC	5 cut(s)	33, 134, 201, 235, 255
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 297, 314, 323
BstSFI	CTRYAG	1 cut(s)	289
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	201, 303
BstX2I	RGATCY	2 cut(s)	33, 201
BstYI	RGATCY	2 cut(s)	33, 201
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	238
CfoI	GCGC	1 cut(s)	269
CseI	GACGC	2 cut(s)	297, 314
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	3 cut(s)	161, 192, 300
CviKI_1	RGCY	3 cut(s)	161, 192, 300
DinI	GGCGCC	1 cut(s)	268
DpnI	GATC	5 cut(s)	35, 136, 203, 237, 257
DpnII	GATC	5 cut(s)	33, 134, 201, 235, 255
DrdI	GACNNNNNNGTC	1 cut(s)	151
DseDI	GACNNNNNNGTC	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	89
EgeI	GGCGCC	1 cut(s)	268
EheI	GGCGCC	1 cut(s)	268
Esp3I	CGTCTC	2 cut(s)	159, 315
FaeI	CATG	1 cut(s)	317
FaiI	YATR	3 cut(s)	23, 186, 315
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	1 cut(s)	313
FauI	CCCGC	1 cut(s)	96
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	3 cut(s)	190, 292, 327
Fsp4HI	GCNGC	3 cut(s)	190, 292, 327
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	3 cut(s)	190, 292, 327
HaeII	RGCGCY	1 cut(s)	270
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	2 cut(s)	297, 314
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	3 cut(s)	43, 114, 209
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	208, 260, 304
Hpy188III	TCNNGA	1 cut(s)	233
Hpy99I	CGWCG	3 cut(s)	113, 148, 308
HpyAV	CCTTC	2 cut(s)	160, 229
HpyCH4III	ACNGT	2 cut(s)	100, 282
HpyCH4V	TGCA	2 cut(s)	12, 291
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 297, 314, 323
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	1 cut(s)	267
KasI	GGCGCC	1 cut(s)	266
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	5 cut(s)	33, 134, 201, 235, 255
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	6 cut(s)	16, 53, 66, 171, 184, 246
Lsp1109I	GCAGC	2 cut(s)	201, 303
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	5 cut(s)	35, 136, 203, 237, 257
MboI	GATC	5 cut(s)	33, 134, 201, 235, 255
MflI	RGATCY	2 cut(s)	33, 201
MluI	ACGCGT	1 cut(s)	306
Mly113I	GGCGCC	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	3 cut(s)	200, 231, 327
MnlI	CCTC	3 cut(s)	190, 233, 328
MseI	TTAA	1 cut(s)	340
MspI	CCGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	4 cut(s)	167, 297, 314, 323
NarI	GGCGCC	1 cut(s)	267
NdeII	GATC	5 cut(s)	33, 134, 201, 235, 255
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	100
NspV	TTCGAA	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	43, 114
PflFI	GACNNNGTC	1 cut(s)	151
PkrI	GCNGC	3 cut(s)	191, 293, 328
PleI	GAGTC	1 cut(s)	203
PluTI	GGCGCC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	293
PsuI	RGATCY	2 cut(s)	33, 201
PsyI	GACNNNGTC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	340
SatI	GCNGC	3 cut(s)	190, 292, 327
Sau3AI	GATC	5 cut(s)	33, 134, 201, 235, 255
SchI	GAGTC	1 cut(s)	203
SetI	ASST	3 cut(s)	182, 194, 302
SfcI	CTRYAG	1 cut(s)	289
SfoI	GGCGCC	1 cut(s)	268
SfuI	TTCGAA	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
SsiI	CCGC	4 cut(s)	89, 105, 324, 327
SspDI	GGCGCC	1 cut(s)	266
TaaI	ACNGT	2 cut(s)	100, 282
TaqI	TCGA	2 cut(s)	137, 164
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	43, 114
Tru1I	TTAA	1 cut(s)	340
Tru9I	TTAA	1 cut(s)	340
TscAI	CASTG	1 cut(s)	245
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	189, 291
Tsp45I	GTSAC	1 cut(s)	100
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	245
Tth111I	GACNNNGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.