Rh1BG176900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0012676
Physical Location & Seq
Reverse (-)
28266785 .. 28268821
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG176900.1

Sequence Viewer

Length: 291 bp
ATGAAGGTAATCACTATCCTAATTGCTGTTTCGATTGTTTTTCCTGGAATTGTGAATTTTGTTGTCATGGAAAAACTGAATCGCGTTGGCCGATTGAAATTGAATCTCCAGTGCAGGGCGCCGTTTCGCGACTGTATCTCTGCAGCAACAGCTCTGACGAGTCTCATGCCTCCACCGCCGCCGTCCCCGCTTAACCTTTCACAACGATTTTCCGCTCCGAAACACCGACCAAGGCGCTTTCCGGCAAACTCTCGCTCCAGATTTGGTAATTTTCCTGCAAAAGAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.75

Weight (kDa)

11.93

Isoelectric Point (pI)

56.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 118
AccBSI CCGCTC 1 cut(s) 215
AccII CGCG 2 cut(s) 84, 129
AciI CCGC 4 cut(s) 176, 179, 188, 213
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 1 cut(s) 55
AcyI GRCGYC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 2 cut(s) 97, 103
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 167
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 55
AspLEI GCGC 2 cut(s) 121, 237
BanI GGYRCC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 155
BceAI ACGGC 2 cut(s) 106, 166
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 141
BfoI RGCGCY 2 cut(s) 122, 238
BisI GCNGC 2 cut(s) 144, 179
BlsI GCNGC 2 cut(s) 145, 180
Bme1390I CCNGG 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 45
BpmI CTGGAG 2 cut(s) 92, 241
BsaHI GRCGYC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 230
BseLI CCNNNNNNNGG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 155
BsgI GTGCAG 1 cut(s) 133
Bsh1236I CGCG 2 cut(s) 84, 129
BshFI GGCC 1 cut(s) 90
BshNI GGYRCC 1 cut(s) 118
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 1 cut(s) 90
Bsp68I TCGCGA 1 cut(s) 129
BspACI CCGC 4 cut(s) 176, 179, 188, 213
BspANI GGCC 1 cut(s) 90
BspFNI CGCG 2 cut(s) 84, 129
BspLI GGNNCC 1 cut(s) 120
BspMAI CTGCAG 1 cut(s) 145
BspT107I GGYRCC 1 cut(s) 118
BsrBI CCGCTC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 230
BssNI GRCGYC 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 119
BstFNI CGCG 2 cut(s) 84, 129
BstH2I RGCGCY 2 cut(s) 122, 238
BstHHI GCGC 2 cut(s) 121, 237
BstMAI GTCTC 1 cut(s) 167
BstMWI GCNNNNNNNGC 3 cut(s) 149, 175, 187
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 141
BstUI CGCG 2 cut(s) 84, 129
BstV1I GCAGC 1 cut(s) 155
BsuRI GGCC 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 116
BtuMI TCGCGA 1 cut(s) 129
CfoI GCGC 2 cut(s) 121, 237
CviAII CATG 2 cut(s) 67, 166
CviJI RGCY 2 cut(s) 90, 152
CviKI_1 RGCY 2 cut(s) 90, 152
DinI GGCGCC 1 cut(s) 120
EaeI YGGCCR 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 230
EgeI GGCGCC 1 cut(s) 120
EheI GGCGCC 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 2 cut(s) 70, 169
FaiI YATR 2 cut(s) 68, 167
FaqI GGGAC 1 cut(s) 169
FatI CATG 2 cut(s) 66, 165
FauI CCCGC 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 144, 179
Fsp4HI GCNGC 2 cut(s) 144, 179
GlaI GCGC 2 cut(s) 120, 236
GluI GCNGC 2 cut(s) 144, 179
GsuI CTGGAG 2 cut(s) 92, 241
HaeII RGCGCY 2 cut(s) 122, 238
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 242
HhaI GCGC 2 cut(s) 121, 237
Hin1I GRCGYC 1 cut(s) 119
Hin1II CATG 2 cut(s) 70, 169
Hin6I GCGC 2 cut(s) 119, 235
HinP1I GCGC 2 cut(s) 119, 235
HinfI GANTC 3 cut(s) 79, 103, 160
HpaII CCGG 1 cut(s) 242
Hpy188I TCNGA 2 cut(s) 156, 219
Hpy188III TCNNGA 2 cut(s) 128, 258
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 114, 143, 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 175, 187
Hsp92I GRCGYC 1 cut(s) 119
Hsp92II CATG 2 cut(s) 70, 169
HspAI GCGC 2 cut(s) 119, 235
KasI GGCGCC 1 cut(s) 118
LmnI GCTCC 2 cut(s) 220, 260
LpnPI CCDG 6 cut(s) 30, 57, 100, 122, 255, 271
Lsp1109I GCAGC 1 cut(s) 155
MbiI CCGCTC 1 cut(s) 215
MluCI AATT 5 cut(s) 21, 48, 55, 98, 268
Mly113I GGCGCC 1 cut(s) 119
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 1 cut(s) 180
MseI TTAA 1 cut(s) 192
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 45
MvnI CGCG 2 cut(s) 84, 129
MwoI GCNNNNNNNGC 3 cut(s) 149, 175, 187
NarI GGCGCC 1 cut(s) 119
NlaIII CATG 2 cut(s) 70, 169
NlaIV GGNNCC 1 cut(s) 120
NruI TCGCGA 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 88
PfeI GAWTC 2 cut(s) 79, 103
PfoI TCCNGGA 1 cut(s) 43
PkrI GCNGC 2 cut(s) 145, 180
PleI GAGTC 1 cut(s) 168
PluTI GGCGCC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 145
RruI TCGCGA 1 cut(s) 129
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 2 cut(s) 144, 179
SchI GAGTC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 45
SetI ASST 3 cut(s) 9, 154, 198
SfcI CTRYAG 1 cut(s) 141
SfoI GGCGCC 1 cut(s) 120
Sse9I AATT 5 cut(s) 21, 48, 55, 98, 268
SsiI CCGC 4 cut(s) 176, 179, 188, 213
SspDI GGCGCC 1 cut(s) 118
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 134
TaqI TCGA 1 cut(s) 32
TasI AATT 5 cut(s) 21, 48, 55, 98, 268
TauI GCSGC 1 cut(s) 181
TfiI GAWTC 2 cut(s) 79, 103
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 116
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 116
XapI RAATTY 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.