RLG00000033824

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012676
Physical Location & Seq
Reverse (-)
32701941 .. 32702887
947 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033824

Sequence Viewer

Length: 447 bp
ATGACCGCCTCCAACTCCAATTCTCTCCCTCCATCTCAGCCATGGCCGCCGTGCACGAATCACCCACTGGTCCAAGCCGTTCCTCAAGCCGACTCCGGTCTCCCACAGATCATTGTCGCAGCCGACGGATTCCTTGCTTCTCCCACAGATCGACAGCGACGACTTCGTCTCCGGCTTCGAAGGTGCACGACGAGGCGAGGCAAGGCAACCCAGGCATCGACGACGTCATCTAAGGCTCAGTTTGGTGTCAACTCCTTCAAGCCACCTGATTCTCATGAAGGGCGCCGTTTTGTGATTGTATCTCTGCAGCAACAGCTCCGACGTGTCTCATGCCTCCACCGCCGCCGTCCTCGTTTAACCTTTCACAACGATTTTCCTCTTCGAAACACCGACCAAGGCACTTTCCGGCAAACTCTCGCTCCAGGAATTGAATTCCCTGGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.59

Weight (kDa)

11.77

Isoelectric Point (pI)

80.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 165
AatII GACGTC 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 282
AciI CCGC 4 cut(s) 6, 47, 340, 343
AcoI YGGCCR 1 cut(s) 44
AcsI RAATTY 1 cut(s) 431
AcyI GRCGYC 2 cut(s) 224, 283
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 2 cut(s) 259, 431
AjiI CACGTC 1 cut(s) 323
AjnI CCWGG 3 cut(s) 210, 421, 436
AluBI AGCT 1 cut(s) 316
AluI AGCT 1 cut(s) 316
Alw21I GWGCWC 2 cut(s) 56, 188
Alw26I GTCTC 3 cut(s) 104, 173, 331
Alw44I GTGCAC 2 cut(s) 52, 184
AoxI GGCC 1 cut(s) 44
ApaLI GTGCAC 2 cut(s) 52, 184
ApeKI GCWGC 2 cut(s) 119, 307
ApoI RAATTY 1 cut(s) 431
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 53
AsuII TTCGAA 2 cut(s) 178, 382
AvaII GGWCC 1 cut(s) 70
BaeGI GKGCMC 2 cut(s) 56, 188
BanI GGYRCC 1 cut(s) 282
Bbv12I GWGCWC 2 cut(s) 56, 188
BbvI GCAGC 2 cut(s) 131, 319
BccI CCATC 1 cut(s) 40
BceAI ACGGC 4 cut(s) 34, 62, 270, 330
BciT130I CCWGG 3 cut(s) 212, 423, 438
BcoDI GTCTC 3 cut(s) 104, 173, 331
BfmI CTRYAG 1 cut(s) 305
BfoI RGCGCY 1 cut(s) 286
BisI GCNGC 4 cut(s) 47, 120, 308, 343
BlsI GCNGC 4 cut(s) 48, 121, 309, 344
Bme1390I CCNGG 3 cut(s) 212, 423, 438
Bme18I GGWCC 1 cut(s) 70
BmgBI CACGTC 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 284
BmrFI CCNGG 3 cut(s) 212, 423, 438
BmsI GCATC 1 cut(s) 224
BoxI GACNNNNGTC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 405
Bpu14I TTCGAA 2 cut(s) 178, 382
BpuEI CTTGAG 1 cut(s) 69
BsaHI GRCGYC 2 cut(s) 224, 283
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 5 cut(s) 41, 210, 394, 436, 437
BsaWI WCCGGW 1 cut(s) 95
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 403, 433
Bse1I ACTGG 1 cut(s) 72
BseBI CCWGG 3 cut(s) 212, 423, 438
BseDI CCNNGG 5 cut(s) 41, 210, 394, 436, 437
BseMII CTCAG 2 cut(s) 50, 251
BseNI ACTGG 1 cut(s) 72
BseSI GKGCMC 2 cut(s) 56, 188
BseXI GCAGC 2 cut(s) 131, 319
BshFI GGCC 1 cut(s) 46
BshNI GGYRCC 1 cut(s) 282
BsiHKAI GWGCWC 2 cut(s) 56, 188
BsiSI CCGG 3 cut(s) 96, 172, 406
BsmAI GTCTC 3 cut(s) 104, 173, 331
BsmBI CGTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 46
Bso31I GGTCTC 1 cut(s) 104
Bsp119I TTCGAA 2 cut(s) 178, 382
Bsp1286I GDGCHC 2 cut(s) 56, 188
Bsp143I GATC 2 cut(s) 108, 148
Bsp19I CCATGG 1 cut(s) 41
BspACI CCGC 4 cut(s) 6, 47, 340, 343
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 2 cut(s) 49, 250
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 284
BspMAI CTGCAG 1 cut(s) 309
BspT104I TTCGAA 2 cut(s) 178, 382
BspT107I GGYRCC 1 cut(s) 282
BspTNI GGTCTC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 5 cut(s) 41, 210, 394, 436, 437
BssMI GATC 2 cut(s) 108, 148
BssNI GRCGYC 2 cut(s) 224, 283
BssT1I CCWWGG 2 cut(s) 41, 394
Bst2UI CCWGG 3 cut(s) 212, 423, 438
Bst6I CTCTTC 1 cut(s) 384
BstACI GRCGYC 2 cut(s) 224, 283
BstBI TTCGAA 2 cut(s) 178, 382
BstDEI CTNAG 3 cut(s) 36, 231, 237
BstDSI CCRYGG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 286
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 2 cut(s) 111, 151
BstMAI GTCTC 3 cut(s) 104, 173, 331
BstMBI GATC 2 cut(s) 108, 148
BstMWI GCNNNNNNNGC 4 cut(s) 46, 212, 313, 339
BstNI CCWGG 3 cut(s) 212, 423, 438
BstPAI GACNNNNGTC 1 cut(s) 96
BstSCI CCNGG 3 cut(s) 210, 421, 436
BstSFI CTRYAG 1 cut(s) 305
BstSLI GKGCMC 2 cut(s) 56, 188
BstV1I GCAGC 2 cut(s) 131, 319
BsuRI GGCC 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 41
BtrI CACGTC 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 65
CciI TCATGA 1 cut(s) 274
CfoI GCGC 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 70
CviAII CATG 3 cut(s) 42, 275, 330
DdeI CTNAG 3 cut(s) 36, 231, 237
DinI GGCGCC 1 cut(s) 284
DpnI GATC 2 cut(s) 110, 150
DpnII GATC 2 cut(s) 108, 148
DrdI GACNNNNNNGTC 1 cut(s) 165
DseDI GACNNNNNNGTC 1 cut(s) 165
EaeI YGGCCR 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco130I CCWWGG 2 cut(s) 41, 394
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 70
EcoRI GAATTC 1 cut(s) 431
EcoRII CCWGG 3 cut(s) 210, 421, 436
EcoT14I CCWWGG 2 cut(s) 41, 394
EgeI GGCGCC 1 cut(s) 284
EheI GGCGCC 1 cut(s) 284
ErhI CCWWGG 2 cut(s) 41, 394
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 3 cut(s) 45, 278, 333
FaiI YATR 4 cut(s) 43, 276, 331, 445
FatI CATG 3 cut(s) 41, 274, 329
Fnu4HI GCNGC 4 cut(s) 47, 120, 308, 343
Fsp4HI GCNGC 4 cut(s) 47, 120, 308, 343
GlaI GCGC 1 cut(s) 284
GluI GCNGC 4 cut(s) 47, 120, 308, 343
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 1 cut(s) 286
HaeIII GGCC 1 cut(s) 46
HapII CCGG 3 cut(s) 96, 172, 406
HhaI GCGC 1 cut(s) 285
Hin1I GRCGYC 2 cut(s) 224, 283
Hin1II CATG 3 cut(s) 45, 278, 333
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 4 cut(s) 58, 92, 129, 269
HpaII CCGG 3 cut(s) 96, 172, 406
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 3 cut(s) 54, 186, 250
Hpy188I TCNGA 1 cut(s) 320
Hpy188III TCNNGA 1 cut(s) 275
Hpy8I GTNNAC 3 cut(s) 54, 186, 250
Hpy99I CGWCG 6 cut(s) 128, 162, 193, 223, 226, 324
HpyAV CCTTC 3 cut(s) 174, 265, 272
HpyCH4IV ACGT 2 cut(s) 224, 322
HpyCH4V TGCA 3 cut(s) 54, 186, 307
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 212, 313, 339
HpyF3I CTNAG 3 cut(s) 36, 231, 237
HpySE526I ACGT 2 cut(s) 224, 322
Hsp92I GRCGYC 2 cut(s) 224, 283
Hsp92II CATG 3 cut(s) 45, 278, 333
HspAI GCGC 1 cut(s) 283
KasI GGCGCC 1 cut(s) 282
Kzo9I GATC 2 cut(s) 108, 148
LmnI GCTCC 2 cut(s) 321, 424
Lsp1109I GCAGC 2 cut(s) 131, 319
LweI GCATC 1 cut(s) 224
MaeII ACGT 2 cut(s) 224, 322
MalI GATC 2 cut(s) 110, 150
MboI GATC 2 cut(s) 108, 148
MboII GAAGA 1 cut(s) 371
MhlI GDGCHC 2 cut(s) 56, 188
MluCI AATT 3 cut(s) 19, 426, 431
Mly113I GGCGCC 1 cut(s) 283
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 2 cut(s) 36, 343
MnlI CCTC 8 cut(s) 19, 39, 93, 186, 191, 344, 360, 387
MseI TTAA 1 cut(s) 356
MspI CCGG 3 cut(s) 96, 172, 406
MspR9I CCNGG 3 cut(s) 212, 423, 438
MvaI CCWGG 3 cut(s) 212, 423, 438
MwoI GCNNNNNNNGC 4 cut(s) 46, 212, 313, 339
NarI GGCGCC 1 cut(s) 283
NcoI CCATGG 1 cut(s) 41
NdeII GATC 2 cut(s) 108, 148
NlaIII CATG 3 cut(s) 45, 278, 333
NlaIV GGNNCC 1 cut(s) 284
NspV TTCGAA 2 cut(s) 178, 382
PagI TCATGA 1 cut(s) 274
PasI CCCWGGG 1 cut(s) 437
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PfeI GAWTC 3 cut(s) 58, 129, 269
PflFI GACNNNGTC 2 cut(s) 165, 223
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 4 cut(s) 48, 121, 309, 344
PleI GAGTC 1 cut(s) 86
PluTI GGCGCC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 86
PshAI GACNNNNGTC 1 cut(s) 96
Psp6I CCWGG 3 cut(s) 210, 421, 436
PspGI CCWGG 3 cut(s) 210, 421, 436
PspN4I GGNNCC 1 cut(s) 284
PspPI GGNCC 1 cut(s) 70
PstI CTGCAG 1 cut(s) 309
PsyI GACNNNGTC 2 cut(s) 165, 223
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 4 cut(s) 47, 120, 308, 343
Sau3AI GATC 2 cut(s) 108, 148
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 3 cut(s) 212, 423, 438
SduI GDGCHC 2 cut(s) 56, 188
SetI ASST 6 cut(s) 185, 227, 268, 318, 325, 362
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 1 cut(s) 305
SfoI GGCGCC 1 cut(s) 284
SfuI TTCGAA 2 cut(s) 178, 382
SinI GGWCC 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 3 cut(s) 19, 426, 431
SsiI CCGC 4 cut(s) 6, 47, 340, 343
SspDI GGCGCC 1 cut(s) 282
StyD4I CCNGG 3 cut(s) 210, 421, 436
StyI CCWWGG 2 cut(s) 41, 394
TaiI ACGT 2 cut(s) 227, 325
TaqI TCGA 4 cut(s) 151, 178, 218, 382
TasI AATT 3 cut(s) 19, 426, 431
TauI GCSGC 2 cut(s) 49, 345
TfiI GAWTC 3 cut(s) 58, 129, 269
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 1 cut(s) 72
TseI GCWGC 2 cut(s) 119, 307
TspDTI ATGAA 1 cut(s) 291
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 1 cut(s) 72
Tth111I GACNNNGTC 2 cut(s) 165, 223
VneI GTGCAC 2 cut(s) 52, 184
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 1 cut(s) 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 39
ZraI GACGTC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.