RLG00000008674

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012676
Physical Location & Seq
Forward (+)
34719424 .. 34723312
3889 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008674

Sequence Viewer

Length: 714 bp
ATGACCGCTTCCAACTCCGATTCTCTCTCTCCGTCTCAGTCATGGCCGCCGTGCACGAATCACCCACTGGTCCAAGCCGTTCCTCAAGTACCTAATACCAGAGCCCTAGCCCAAATCCAAGACTTTAAATCTCACATAATCAGCTGGATCTCCCAGATTCTTTCGACTTCGCCATTGTCTCTCTCCGCCGACTCCAGTCTCCCTCAGATCACTGTCGCCGCCGACGGATTCCATTGCTTCTCCCACAGATCGACAGCGACGACTTCGTCTTCAGCTTCGAAGGCAAGTCCAACCTCTTCTGGCGGCTTGAACTGGATCTTCGACTCTCTCCTCTTCCTCTCAATTCCATCGACCACATCTCCGCTTCAGGCTCCTCAACGACTCCCTCCCTCCACGATTCAGTCCTCCAAGGCGAGCACAATCGAACGCCAGATAGTCCAAAGCTTAGCGCAGCCTAGAAGCCTCAGCAAGTTGAGTGGTGCCAGCGACATTGGCATTCCGGTCACAACCCATCAATATGACAGCCTTAAACTTGGCCTCGAAGCAGAGAAACGCAAGGCTGATCATCCTTATCTAGGTCTCAACCTACGACGGCCTGGGCCTGGTCTAGTCAGACGGCCTGGGCCGAGTCACTGGACACTAACAGAGGGTGAATCCATCGACGTCAGAGACTTGGCCAGTGATAGCAGAGACTTGTCCAGCGGTTACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

25.4

Weight (kDa)

8.64

Isoelectric Point (pI)

62.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 265
AatII GACGTC 1 cut(s) 666
AccB1I GGYRCC 1 cut(s) 479
AciI CCGC 7 cut(s) 6, 47, 186, 219, 303, 362, 702
AclWI GGATC 2 cut(s) 155, 323
AcoI YGGCCR 2 cut(s) 44, 675
AcuI CTGAAG 2 cut(s) 255, 350
AcyI GRCGYC 1 cut(s) 663
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 2 cut(s) 575, 602
AgsI TTSAA 1 cut(s) 310
AjnI CCWGG 3 cut(s) 595, 601, 619
AluBI AGCT 3 cut(s) 144, 275, 444
AluI AGCT 3 cut(s) 144, 275, 444
Alw21I GWGCWC 2 cut(s) 56, 419
Alw26I GTCTC 6 cut(s) 39, 183, 203, 584, 663, 684
Alw44I GTGCAC 1 cut(s) 52
AlwI GGATC 2 cut(s) 155, 323
AoxI GGCC 7 cut(s) 44, 535, 593, 599, 617, 623, 675
ApaLI GTGCAC 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 451
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 3 cut(s) 70, 599, 623
AsuHPI GGTGA 2 cut(s) 53, 662
AsuII TTCGAA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 56
BalI TGGCCA 1 cut(s) 677
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 106
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 2 cut(s) 56, 419
BbvCI CCTCAGC 1 cut(s) 464
BbvI GCAGC 1 cut(s) 463
BccI CCATC 3 cut(s) 355, 519, 665
BceAI ACGGC 4 cut(s) 34, 62, 608, 632
BciT130I CCWGG 3 cut(s) 597, 603, 621
BclI TGATCA 1 cut(s) 562
BcoDI GTCTC 6 cut(s) 39, 183, 203, 584, 663, 684
BfaI CTAG 4 cut(s) 107, 456, 575, 608
BisI GCNGC 4 cut(s) 47, 219, 304, 452
BlpI GCTNAGC 1 cut(s) 445
BlsI GCNGC 4 cut(s) 48, 220, 305, 453
Bme1390I CCNGG 3 cut(s) 597, 603, 621
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 3 cut(s) 70, 599, 623
BmiI GGNNCC 2 cut(s) 372, 481
BmrFI CCNGG 3 cut(s) 597, 603, 621
BoxI GACNNNNGTC 1 cut(s) 195
BpiI GAAGAC 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 178
Bpu10I CCTNAGC 1 cut(s) 464
Bpu1102I GCTNAGC 1 cut(s) 445
Bpu14I TTCGAA 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 663
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 3 cut(s) 408, 596, 620
BsaWI WCCGGW 1 cut(s) 499
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bsc4I CCNNNNNNNGG 2 cut(s) 575, 602
Bse1I ACTGG 5 cut(s) 72, 195, 317, 638, 678
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 3 cut(s) 597, 603, 621
BseDI CCNNGG 3 cut(s) 408, 596, 620
BseGI GGATG 1 cut(s) 565
BseLI CCNNNNNNNGG 2 cut(s) 575, 602
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 3 cut(s) 50, 218, 478
BseNI ACTGG 5 cut(s) 72, 195, 317, 638, 678
BseRI GAGGAG 2 cut(s) 320, 363
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 1 cut(s) 463
BshFI GGCC 7 cut(s) 46, 537, 595, 601, 619, 625, 677
BshNI GGYRCC 1 cut(s) 479
BsiHKAI GWGCWC 2 cut(s) 56, 419
BsiSI CCGG 1 cut(s) 500
BslI CCNNNNNNNGG 2 cut(s) 575, 602
BsmAI GTCTC 6 cut(s) 39, 183, 203, 584, 663, 684
BsmBI CGTCTC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 7 cut(s) 46, 537, 595, 601, 619, 625, 677
Bso31I GGTCTC 1 cut(s) 584
Bsp119I TTCGAA 1 cut(s) 278
Bsp1286I GDGCHC 3 cut(s) 56, 106, 419
Bsp143I GATC 5 cut(s) 147, 207, 248, 315, 562
Bsp1720I GCTNAGC 1 cut(s) 445
BspACI CCGC 7 cut(s) 6, 47, 186, 219, 303, 362, 702
BspANI GGCC 7 cut(s) 46, 537, 595, 601, 619, 625, 677
BspCNI CTCAG 3 cut(s) 49, 217, 477
BspLI GGNNCC 2 cut(s) 372, 481
BspPI GGATC 2 cut(s) 155, 323
BspT104I TTCGAA 1 cut(s) 278
BspT107I GGYRCC 1 cut(s) 479
BspTNI GGTCTC 1 cut(s) 584
BsrDI GCAATG 1 cut(s) 232
BsrI ACTGG 5 cut(s) 72, 195, 317, 638, 678
BssECI CCNNGG 3 cut(s) 408, 596, 620
BssMI GATC 5 cut(s) 147, 207, 248, 315, 562
BssNI GRCGYC 1 cut(s) 663
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 3 cut(s) 597, 603, 621
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 2 cut(s) 301, 338
BstACI GRCGYC 1 cut(s) 663
BstBI TTCGAA 1 cut(s) 278
BstC8I GCNNGC 2 cut(s) 415, 484
BstDEI CTNAG 4 cut(s) 36, 204, 445, 464
BstENI CCTNNNNNAGG 1 cut(s) 573
BstF5I GGATG 1 cut(s) 565
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 5 cut(s) 150, 210, 251, 318, 565
BstMAI GTCTC 6 cut(s) 39, 183, 203, 584, 663, 684
BstMBI GATC 5 cut(s) 147, 207, 248, 315, 562
BstMWI GCNNNNNNNGC 2 cut(s) 281, 492
BstNI CCWGG 3 cut(s) 597, 603, 621
BstPAI GACNNNNGTC 1 cut(s) 195
BstSCI CCNGG 3 cut(s) 595, 601, 619
BstSLI GKGCMC 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 463
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 2 cut(s) 147, 315
BstYI RGATCY 2 cut(s) 147, 315
BsuRI GGCC 7 cut(s) 46, 537, 595, 601, 619, 625, 677
BtsCI GGATG 1 cut(s) 565
BtsIMutI CAGTG 4 cut(s) 65, 210, 631, 685
Cac8I GCNNGC 2 cut(s) 415, 484
CfoI GCGC 1 cut(s) 451
Cfr13I GGNCC 3 cut(s) 70, 599, 623
Csp6I GTAC 1 cut(s) 89
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviAII CATG 1 cut(s) 42
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 4 cut(s) 36, 204, 445, 464
DpnI GATC 5 cut(s) 149, 209, 250, 317, 564
DpnII GATC 5 cut(s) 147, 207, 248, 315, 562
DraI TTTAAA 1 cut(s) 127
DrdI GACNNNNNNGTC 1 cut(s) 265
DseDI GACNNNNNNGTC 1 cut(s) 265
EaeI YGGCCR 2 cut(s) 44, 675
Eam1104I CTCTTC 2 cut(s) 301, 338
EarI CTCTTC 2 cut(s) 301, 338
EciI GGCGGA 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 106
Eco31I GGTCTC 1 cut(s) 584
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 2 cut(s) 255, 350
EcoNI CCTNNNNNAGG 1 cut(s) 573
EcoRII CCWGG 3 cut(s) 595, 601, 619
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 408
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 1 cut(s) 45
FaiI YATR 3 cut(s) 43, 137, 519
FatI CATG 1 cut(s) 41
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 4 cut(s) 47, 219, 304, 452
FokI GGATG 1 cut(s) 552
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 4 cut(s) 47, 219, 304, 452
FspBI CTAG 4 cut(s) 107, 456, 575, 608
GlaI GCGC 1 cut(s) 450
GluI GCNGC 4 cut(s) 47, 219, 304, 452
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 7 cut(s) 46, 537, 595, 601, 619, 625, 677
HapII CCGG 1 cut(s) 500
HhaI GCGC 1 cut(s) 451
Hin1I GRCGYC 1 cut(s) 663
Hin1II CATG 1 cut(s) 45
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HindIII AAGCTT 1 cut(s) 442
HpaII CCGG 1 cut(s) 500
HphI GGTGA 2 cut(s) 53, 662
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 4 cut(s) 19, 207, 614, 668
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 4 cut(s) 227, 262, 594, 665
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 663
HpyCH4V TGCA 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 492
HpyF3I CTNAG 4 cut(s) 36, 204, 445, 464
HpySE526I ACGT 1 cut(s) 663
Hsp92I GRCGYC 1 cut(s) 663
Hsp92II CATG 1 cut(s) 45
HspAI GCGC 1 cut(s) 449
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 5 cut(s) 147, 207, 248, 315, 562
LmnI GCTCC 1 cut(s) 376
Lsp1109I GCAGC 1 cut(s) 463
MaeI CTAG 4 cut(s) 107, 456, 575, 608
MaeII ACGT 1 cut(s) 663
MaeIII GTNAC 3 cut(s) 502, 629, 704
MalI GATC 5 cut(s) 149, 209, 250, 317, 564
MboI GATC 5 cut(s) 147, 207, 248, 315, 562
MboII GAAGA 4 cut(s) 261, 288, 310, 325
MflI RGATCY 2 cut(s) 147, 315
MhlI GDGCHC 3 cut(s) 56, 106, 419
MlsI TGGCCA 1 cut(s) 677
MluCI AATT 1 cut(s) 342
MluNI TGGCCA 1 cut(s) 677
MlyI GAGTC 4 cut(s) 185, 317, 375, 637
MmeI TCCRAC 2 cut(s) 36, 314
Mox20I TGGCCA 1 cut(s) 677
MscI TGGCCA 1 cut(s) 677
MseI TTAA 2 cut(s) 126, 528
MslI CAYNNNNRTG 1 cut(s) 516
Msp20I TGGCCA 1 cut(s) 677
MspA1I CMGCKG 2 cut(s) 144, 702
MspI CCGG 1 cut(s) 500
MspR9I CCNGG 3 cut(s) 597, 603, 621
Mva1269I GAATGC 1 cut(s) 495
MvaI CCWGG 3 cut(s) 597, 603, 621
MwoI GCNNNNNNNGC 2 cut(s) 281, 492
NdeII GATC 5 cut(s) 147, 207, 248, 315, 562
NlaIII CATG 1 cut(s) 45
NlaIV GGNNCC 2 cut(s) 372, 481
NmeAIII GCCGAG 1 cut(s) 651
NmuCI GTSAC 2 cut(s) 502, 629
NspV TTCGAA 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 257
PctI GAATGC 1 cut(s) 495
PfeI GAWTC 6 cut(s) 20, 58, 157, 228, 397, 653
PflFI GACNNNGTC 1 cut(s) 265
PkrI GCNGC 4 cut(s) 48, 220, 305, 453
PleI GAGTC 4 cut(s) 185, 317, 375, 636
PpsI GAGTC 4 cut(s) 185, 317, 375, 636
PshAI GACNNNNGTC 1 cut(s) 195
Psp6I CCWGG 3 cut(s) 595, 601, 619
PspGI CCWGG 3 cut(s) 595, 601, 619
PspN4I GGNNCC 2 cut(s) 372, 481
PspPI GGNCC 3 cut(s) 70, 599, 623
PsuI RGATCY 2 cut(s) 147, 315
PsyI GACNNNGTC 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 144
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
RseI CAYNNNNRTG 1 cut(s) 516
SaqAI TTAA 2 cut(s) 126, 528
SatI GCNGC 4 cut(s) 47, 219, 304, 452
Sau3AI GATC 5 cut(s) 147, 207, 248, 315, 562
Sau96I GGNCC 3 cut(s) 70, 599, 623
SchI GAGTC 4 cut(s) 185, 317, 375, 637
ScrFI CCNGG 3 cut(s) 597, 603, 621
SduI GDGCHC 3 cut(s) 56, 106, 419
SetI ASST 8 cut(s) 94, 146, 277, 296, 446, 580, 588, 666
SfuI TTCGAA 1 cut(s) 278
SinI GGWCC 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 1 cut(s) 342
SsiI CCGC 7 cut(s) 6, 47, 186, 219, 303, 362, 702
SspMI CTAG 4 cut(s) 107, 456, 575, 608
StyD4I CCNGG 3 cut(s) 595, 601, 619
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 666
TaqI TCGA 8 cut(s) 164, 251, 278, 321, 350, 423, 540, 660
TasI AATT 1 cut(s) 342
TauI GCSGC 3 cut(s) 49, 221, 306
TfiI GAWTC 6 cut(s) 20, 58, 157, 228, 397, 653
Tru1I TTAA 2 cut(s) 126, 528
Tru9I TTAA 2 cut(s) 126, 528
TscAI CASTG 4 cut(s) 72, 217, 638, 685
TseFI GTSAC 2 cut(s) 502, 629
TseI GCWGC 1 cut(s) 451
Tsp45I GTSAC 2 cut(s) 502, 629
TspGWI ACGGA 2 cut(s) 21, 240
TspRI CASTG 4 cut(s) 72, 217, 638, 685
Tth111I GACNNNGTC 1 cut(s) 265
VneI GTGCAC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 70
XagI CCTNNNNNAGG 1 cut(s) 573
XspI CTAG 4 cut(s) 107, 456, 575, 608
ZraI GACGTC 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.