Rh1BG177000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0012676
Physical Location & Seq
Reverse (-)
28269022 .. 28269347
326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG177000.1

Sequence Viewer

Length: 243 bp
ATGACCGCCTCCAACTCCAAGTCTCAGCTCCCTCCATCTCAGCCATGGCCGCAGTGCACGAATCACCCACTGGTCCAAGCCGTTCCTCAGATCCTTTCGATTTCGCTGTTGTCTCTCTCCGCCGACTCCGATCTCCAGCAGATCACTATCACCGCCGACGGATTCCTTGCTTCTCCCACAGATCGACAGCGACGACTTCGTCTCCGGCTTCGAAGGCAAGTCCAACCTCTTCTGGCGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.84

Weight (kDa)

11.25

Isoelectric Point (pI)

73.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 198
AciI CCGC 5 cut(s) 6, 50, 120, 153, 236
AclWI GGATC 1 cut(s) 85
AcoI YGGCCR 1 cut(s) 47
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 3 cut(s) 27, 117, 206
Alw44I GTGCAC 1 cut(s) 55
AlwI GGATC 1 cut(s) 85
AoxI GGCC 1 cut(s) 47
ApaLI GTGCAC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 56, 142
AsuII TTCGAA 1 cut(s) 211
AvaII GGWCC 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 59
BccI CCATC 1 cut(s) 43
BceAI ACGGC 1 cut(s) 65
BcoDI GTCTC 3 cut(s) 27, 117, 206
BisI GCNGC 2 cut(s) 50, 237
BlsI GCNGC 2 cut(s) 51, 238
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BpmI CTGGAG 1 cut(s) 119
Bpu14I TTCGAA 1 cut(s) 211
BsaBI GATNNNNATC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bse1I ACTGG 1 cut(s) 75
Bse8I GATNNNNATC 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 44
BseJI GATNNNNATC 1 cut(s) 146
BseMII CTCAG 3 cut(s) 38, 53, 101
BseNI ACTGG 1 cut(s) 75
BseSI GKGCMC 1 cut(s) 59
BshFI GGCC 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 205
BsmAI GTCTC 3 cut(s) 27, 117, 206
BsmBI CGTCTC 1 cut(s) 206
BsnI GGCC 1 cut(s) 49
Bsp119I TTCGAA 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 4 cut(s) 90, 130, 141, 181
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 5 cut(s) 6, 50, 120, 153, 236
BspANI GGCC 1 cut(s) 49
BspCNI CTCAG 3 cut(s) 37, 52, 100
BspPI GGATC 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 211
BsrI ACTGG 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 4 cut(s) 90, 130, 141, 181
BssT1I CCWWGG 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 234
BstBI TTCGAA 1 cut(s) 211
BstDEI CTNAG 3 cut(s) 24, 39, 87
BstDSI CCRYGG 1 cut(s) 44
BstKTI GATC 4 cut(s) 93, 133, 144, 184
BstMAI GTCTC 3 cut(s) 27, 117, 206
BstMBI GATC 4 cut(s) 90, 130, 141, 181
BstMWI GCNNNNNNNGC 2 cut(s) 49, 214
BstSLI GKGCMC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuRI GGCC 1 cut(s) 49
BtgI CCRYGG 1 cut(s) 44
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 2 cut(s) 59, 68
Cfr13I GGNCC 1 cut(s) 73
CviAII CATG 1 cut(s) 45
CviJI RGCY 6 cut(s) 28, 43, 49, 80, 208, 239
CviKI_1 RGCY 6 cut(s) 28, 43, 49, 80, 208, 239
DdeI CTNAG 3 cut(s) 24, 39, 87
DpnI GATC 4 cut(s) 92, 132, 143, 183
DpnII GATC 4 cut(s) 90, 130, 141, 181
DrdI GACNNNNNNGTC 1 cut(s) 198
DseDI GACNNNNNNGTC 1 cut(s) 198
EaeI YGGCCR 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
EciI GGCGGA 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 1 cut(s) 48
FaiI YATR 1 cut(s) 46
FatI CATG 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 50, 237
Fsp4HI GCNGC 2 cut(s) 50, 237
GluI GCNGC 2 cut(s) 50, 237
GsuI CTGGAG 1 cut(s) 119
HaeIII GGCC 1 cut(s) 49
HapII CCGG 1 cut(s) 205
Hin1II CATG 1 cut(s) 48
HinfI GANTC 3 cut(s) 61, 125, 162
HpaII CCGG 1 cut(s) 205
HphI GGTGA 2 cut(s) 56, 142
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 2 cut(s) 90, 130
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 2 cut(s) 161, 195
HpyAV CCTTC 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 214
HpyF3I CTNAG 3 cut(s) 24, 39, 87
Hsp92II CATG 1 cut(s) 48
Kzo9I GATC 4 cut(s) 90, 130, 141, 181
LmnI GCTCC 1 cut(s) 33
LpnPI CCDG 4 cut(s) 56, 149, 218, 218
MalI GATC 4 cut(s) 92, 132, 143, 183
MboI GATC 4 cut(s) 90, 130, 141, 181
MboII GAAGA 1 cut(s) 221
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 59
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 4 cut(s) 19, 42, 96, 237
MspI CCGG 1 cut(s) 205
MwoI GCNNNNNNNGC 2 cut(s) 49, 214
NcoI CCATGG 1 cut(s) 44
NdeII GATC 4 cut(s) 90, 130, 141, 181
NlaIII CATG 1 cut(s) 48
NspV TTCGAA 1 cut(s) 211
PcsI WCGNNNNNNNCGW 1 cut(s) 190
PfeI GAWTC 2 cut(s) 61, 162
PflFI GACNNNGTC 1 cut(s) 198
PkrI GCNGC 2 cut(s) 51, 238
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PspPI GGNCC 1 cut(s) 73
PsuI RGATCY 1 cut(s) 90
PsyI GACNNNGTC 1 cut(s) 198
SatI GCNGC 2 cut(s) 50, 237
Sau3AI GATC 4 cut(s) 90, 130, 141, 181
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 1 cut(s) 119
SduI GDGCHC 1 cut(s) 59
SetI ASST 2 cut(s) 30, 229
SfuI TTCGAA 1 cut(s) 211
SgeI CNNG 9 cut(s) 31, 57, 70, 83, 89, 148, 179, 217, 230
SinI GGWCC 1 cut(s) 73
SsiI CCGC 5 cut(s) 6, 50, 120, 153, 236
StyI CCWWGG 1 cut(s) 44
TaqI TCGA 3 cut(s) 98, 184, 211
TauI GCSGC 2 cut(s) 52, 239
TfiI GAWTC 2 cut(s) 61, 162
TscAI CASTG 2 cut(s) 59, 75
TspGWI ACGGA 1 cut(s) 174
TspRI CASTG 2 cut(s) 59, 75
Tth111I GACNNNGTC 1 cut(s) 198
VneI GTGCAC 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.