Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0012676

Physical Location & Seq

Genomic Coordinates Forward (+)

19392955 .. 19404970

Gene Structure 12016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG128600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGAAAACCTGGATCGAGTTGGCCGACTGAAATTGAATCTCCGGTGCAGGGCGTCGTTTCACGACTGTATCTCTGTAGCAACAGCTCCGACGCGTCTCATGCCTCCACCGCCGCCGTCCCCGCTTAACCTTTCACAAGGATTTTCCTCTCCGAAACACCGACCAAGGCGCTTTCCGGCGAACTCTCTCTCCAGATTTGGTAATTTTCTGCAAAGAGTAACACGAAAACAACGCTGGCCTCTTTCTATTGTTGGAAAATTGATTCCGGTCCCTAAGACTCCATTTTCCCAGTATTACAGGCGTAGTAAAGATAAAGTTGGCAAGACTTTCGTACGCGCTCCAAATCTATCAAACTCAAACCATCAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0007338 GO:0008150 GO:0008324 GO:0009555 GO:0009566 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019953 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

123

Amino Acids

14.08

Weight (kDa)

11.84

Isoelectric Point (pI)

59.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012676)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0384271
rosa_laevigata	RLG00000005256 RLG00000008674 RLG00000018852 RLG00000024621 RLG00000033824 RLG00000034611
rosa_multiflora	Rmu_sc0000429.1_g000082
rosa_roxburghii	Rroxscaffold_1G00016470 Rroxscaffold_2G00081350 Rroxscaffold_2G00118670 Rroxscaffold_7G00193240
rosa_samantha	Rh1BG095100 Rh1BG176900 Rh1BG177000 Rh1DG206400 Rh1DG206500 Rh6AG128600 Rh7CG266500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	94, 336
AciI	CCGC	3 cut(s)	110, 113, 122
AclWI	GGATC	1 cut(s)	21
AcoI	YGGCCR	1 cut(s)	22
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	49
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	9
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	21
AoxI	GGCC	2 cut(s)	22, 236
AspLEI	GCGC	2 cut(s)	171, 338
AspS9I	GGNCC	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	268
BaeI	ACNNNNGTAYC	2 cut(s)	52, 85
BccI	CCATC	1 cut(s)	369
BceAI	ACGGC	1 cut(s)	100
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	172
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	11
BmrI	ACTGGG	1 cut(s)	283
BmuI	ACTGGG	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	164
BsaWI	WCCGGW	2 cut(s)	42, 265
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	289
BsgI	GTGCAG	1 cut(s)	67
Bsh1236I	CGCG	2 cut(s)	94, 336
BshFI	GGCC	2 cut(s)	24, 238
BsiSI	CCGG	3 cut(s)	43, 176, 266
BsiWI	CGTACG	1 cut(s)	331
BslFI	GGGAC	2 cut(s)	103, 254
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	101
BsmBI	CGTCTC	1 cut(s)	101
BsmFI	GGGAC	2 cut(s)	103, 254
BsnI	GGCC	2 cut(s)	24, 238
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	3 cut(s)	110, 113, 122
BspANI	GGCC	2 cut(s)	24, 238
BspFNI	CGCG	2 cut(s)	94, 336
BspLI	GGNNCC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	1 cut(s)	13
BssNI	GRCGYC	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	273
BstFNI	CGCG	2 cut(s)	94, 336
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	2 cut(s)	171, 338
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 109, 121
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	75
BstUI	CGCG	2 cut(s)	94, 336
BsuRI	GGCC	2 cut(s)	24, 238
Cac8I	GCNNGC	1 cut(s)	236
CfoI	GCGC	2 cut(s)	171, 338
Cfr13I	GGNCC	1 cut(s)	268
CseI	GACGC	3 cut(s)	42, 83, 100
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	3 cut(s)	24, 86, 238
CviKI_1	RGCY	3 cut(s)	24, 86, 238
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	1 cut(s)	103
FaiI	YATR	1 cut(s)	101
FaqI	GGGAC	2 cut(s)	103, 254
FatI	CATG	1 cut(s)	99
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	113
GlaI	GCGC	2 cut(s)	170, 337
GluI	GCNGC	1 cut(s)	113
GsuI	CTGGAG	1 cut(s)	175
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	24, 238
HapII	CCGG	3 cut(s)	43, 176, 266
HgaI	GACGC	3 cut(s)	42, 83, 100
HhaI	GCGC	2 cut(s)	171, 338
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	2 cut(s)	169, 336
HinP1I	GCGC	2 cut(s)	169, 336
HinfI	GANTC	3 cut(s)	37, 262, 277
HpaII	CCGG	3 cut(s)	43, 176, 266
Hpy188I	TCNGA	3 cut(s)	90, 153, 366
Hpy188III	TCNNGA	2 cut(s)	62, 192
Hpy99I	CGWCG	2 cut(s)	58, 94
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	2 cut(s)	48, 211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 109, 121
HpyF3I	CTNAG	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	2 cut(s)	169, 336
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	2 cut(s)	91, 343
LpnPI	CCDG	9 cut(s)	23, 34, 56, 189, 205, 220, 279, 283, 302
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MluCI	AATT	4 cut(s)	32, 202, 257, 367
MluI	ACGCGT	1 cut(s)	92
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	2 cut(s)	113, 232
MnlI	CCTC	3 cut(s)	114, 157, 249
MseI	TTAA	2 cut(s)	126, 370
MspI	CCGG	3 cut(s)	43, 176, 266
MspR9I	CCNGG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	11
MvnI	CGCG	2 cut(s)	94, 336
MwoI	GCNNNNNNNGC	3 cut(s)	100, 109, 121
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	37, 262
Pfl23II	CGTACG	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	114
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspLI	CGTACG	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	268
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	126, 370
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	3 cut(s)	12, 88, 132
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	268
Sse9I	AATT	4 cut(s)	32, 202, 257, 367
SsiI	CCGC	3 cut(s)	110, 113, 122
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	16
TasI	AATT	4 cut(s)	32, 202, 257, 367
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	2 cut(s)	37, 262
Tru1I	TTAA	2 cut(s)	126, 370
Tru9I	TTAA	2 cut(s)	126, 370
VpaK11BI	GGWCC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.