Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0012676

Physical Location & Seq

Genomic Coordinates Forward (+)

16589086 .. 16590980

Gene Structure 1895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG095100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCCCCCTCTTCCACAGAAGGCTGGGCAGCCATGGCCGCCGTGCACGAATCGGCCACCGGTCCAAGCTGTTCCTCAAGTACCTGATATCGGAGCCCTAGCCCAAATCAGCAACTCCAAATCTCACATAATCAACTGGATCTCCCAGATTCTTTCCACTTCGTCGTTGTCTCTCTCCGCCGACTCCGATCTCCCGCAGATCACTGTCGCCGCCGACGGATTCCATTACTTCTCCCACAGATCGACAGCAACGACTTCGTTTCCGGCTTCGAAGGCAAGTCCAACCTCTTCTGGTAGCTTGAACTGGATCTCCGACTCTCTCCTCTTCCTCTCAATTCCATCGACCACATCTCCGTCTCCGGCTCCTCGACGACTCCCTCCAACTCCTTCCCTCCACGGTTCCGTCCTCCAAGGTGAGCACAATCGAACGCCAGCGAGTCTAAAGCGTAGAGCCGCCGCAGCCGAGAAGCCTCAGCATGCTGAGGTCGTGGATCCGAATGATGATGTTCGACTCCTTGAAGCTTCGATCTCGGCGAGTAGTTTCGTCTCTGACCTTTTCAACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

19.99

Weight (kDa)

7.02

Isoelectric Point (pI)

61.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012676)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0384271
rosa_laevigata	RLG00000005256 RLG00000008674 RLG00000018852 RLG00000024621 RLG00000033824 RLG00000034611
rosa_multiflora	Rmu_sc0000429.1_g000082
rosa_roxburghii	Rroxscaffold_1G00016470 Rroxscaffold_2G00081350 Rroxscaffold_2G00118670 Rroxscaffold_7G00193240
rosa_samantha	Rh1BG095100 Rh1BG176900 Rh1BG177000 Rh1DG206400 Rh1DG206500 Rh6AG128600 Rh7CG266500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	38, 177, 194, 210, 453, 456
AclWI	GGATC	4 cut(s)	146, 314, 485, 498
AcoI	YGGCCR	2 cut(s)	35, 53
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgeI	ACCGGT	1 cut(s)	58
AgsI	TTSAA	3 cut(s)	301, 518, 559
AloI	GAACNNNNNNTCC	2 cut(s)	293, 325
AluBI	AGCT	3 cut(s)	68, 297, 521
AluI	AGCT	3 cut(s)	68, 297, 521
Alw21I	GWGCWC	2 cut(s)	47, 420
Alw26I	GTCTC	3 cut(s)	174, 360, 550
Alw44I	GTGCAC	1 cut(s)	43
AlwI	GGATC	4 cut(s)	146, 314, 485, 498
AoxI	GGCC	2 cut(s)	35, 53
ApaLI	GTGCAC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	28, 458
AsiGI	ACCGGT	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	425
AsuII	TTCGAA	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	47
BamHI	GGATCC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	97
Bbv12I	GWGCWC	2 cut(s)	47, 420
BbvCI	CCTCAGC	2 cut(s)	471, 480
BbvI	GCAGC	2 cut(s)	40, 470
BccI	CCATC	1 cut(s)	346
BceAI	ACGGC	1 cut(s)	25
BcgI	CGANNNNNNTGC	2 cut(s)	237, 271
BcoDI	GTCTC	3 cut(s)	174, 360, 550
BfaI	CTAG	1 cut(s)	98
BisI	GCNGC	6 cut(s)	29, 38, 210, 453, 456, 459
BlsI	GCNGC	6 cut(s)	30, 39, 211, 454, 457, 460
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	4 cut(s)	94, 363, 400, 492
Bpu10I	CCTNAGC	2 cut(s)	471, 480
Bpu14I	TTCGAA	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	60
BsaJI	CCNNGG	3 cut(s)	32, 394, 409
BsaWI	WCCGGW	1 cut(s)	58
BsaXI	ACNNNNNCTCC	6 cut(s)	125, 155, 293, 323, 334, 364
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	2 cut(s)	140, 308
BseDI	CCNNGG	3 cut(s)	32, 394, 409
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	2 cut(s)	471, 485
BseNI	ACTGG	2 cut(s)	140, 308
BseRI	GAGGAG	2 cut(s)	311, 354
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	40, 470
BseYI	CCCAGC	1 cut(s)	23
BshFI	GGCC	2 cut(s)	37, 55
BshTI	ACCGGT	1 cut(s)	58
BsiHKAI	GWGCWC	2 cut(s)	47, 420
BsiSI	CCGG	3 cut(s)	59, 263, 359
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	3 cut(s)	174, 360, 550
BsmBI	CGTCTC	2 cut(s)	360, 550
BsnI	GGCC	2 cut(s)	37, 55
Bsp119I	TTCGAA	1 cut(s)	269
Bsp1286I	GDGCHC	3 cut(s)	47, 97, 420
Bsp143I	GATC	7 cut(s)	138, 187, 198, 239, 306, 490, 525
Bsp19I	CCATGG	1 cut(s)	32
BspACI	CCGC	6 cut(s)	38, 177, 194, 210, 453, 456
BspANI	GGCC	2 cut(s)	37, 55
BspCNI	CTCAG	2 cut(s)	472, 484
BspLI	GGNNCC	4 cut(s)	94, 363, 400, 492
BspPI	GGATC	4 cut(s)	146, 314, 485, 498
BspT104I	TTCGAA	1 cut(s)	269
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	140, 308
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	3 cut(s)	32, 394, 409
BssMI	GATC	7 cut(s)	138, 187, 198, 239, 306, 490, 525
BssT1I	CCWWGG	2 cut(s)	32, 409
Bst4CI	ACNGT	2 cut(s)	205, 398
Bst6I	CTCTTC	3 cut(s)	15, 292, 329
BstBI	TTCGAA	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	432, 477
BstDEI	CTNAG	2 cut(s)	471, 480
BstDSI	CCRYGG	2 cut(s)	32, 394
BstKTI	GATC	7 cut(s)	141, 190, 201, 242, 309, 493, 528
BstMAI	GTCTC	3 cut(s)	174, 360, 550
BstMBI	GATC	7 cut(s)	138, 187, 198, 239, 306, 490, 525
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 37, 272, 458
BstNSI	RCATGY	1 cut(s)	479
BstSLI	GKGCMC	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	40, 470
BstX2I	RGATCY	3 cut(s)	138, 306, 490
BstYI	RGATCY	3 cut(s)	138, 306, 490
BsuRI	GGCC	2 cut(s)	37, 55
BtgI	CCRYGG	2 cut(s)	32, 394
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	432, 477
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	80
CspAI	ACCGGT	1 cut(s)	58
CviAII	CATG	2 cut(s)	33, 476
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	2 cut(s)	471, 480
DpnI	GATC	7 cut(s)	140, 189, 200, 241, 308, 492, 527
DpnII	GATC	7 cut(s)	138, 187, 198, 239, 306, 490, 525
EaeI	YGGCCR	2 cut(s)	35, 53
Eam1104I	CTCTTC	3 cut(s)	15, 292, 329
EarI	CTCTTC	3 cut(s)	15, 292, 329
EciI	GGCGGA	1 cut(s)	166
Eco130I	CCWWGG	2 cut(s)	32, 409
Eco24I	GRGCYC	1 cut(s)	97
Eco32I	GATATC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	88
EcoT14I	CCWWGG	2 cut(s)	32, 409
EcoT38I	GRGCYC	1 cut(s)	97
ErhI	CCWWGG	2 cut(s)	32, 409
Esp3I	CGTCTC	2 cut(s)	360, 550
FaeI	CATG	2 cut(s)	36, 479
FaiI	YATR	3 cut(s)	34, 128, 477
FatI	CATG	2 cut(s)	32, 475
FauI	CCCGC	1 cut(s)	201
Fnu4HI	GCNGC	6 cut(s)	29, 38, 210, 453, 456, 459
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	6 cut(s)	29, 38, 210, 453, 456, 459
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	6 cut(s)	29, 38, 210, 453, 456, 459
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	37, 55
HapII	CCGG	3 cut(s)	59, 263, 359
Hin1II	CATG	2 cut(s)	36, 479
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	8 cut(s)	49, 148, 182, 219, 314, 372, 436, 510
HpaII	CCGG	3 cut(s)	59, 263, 359
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	5 cut(s)	92, 187, 313, 495, 550
Hpy8I	GTNNAC	1 cut(s)	45
Hpy99I	CGWCG	3 cut(s)	166, 218, 372
HpyAV	CCTTC	3 cut(s)	13, 265, 396
HpyCH4III	ACNGT	2 cut(s)	205, 398
HpyCH4V	TGCA	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 37, 272, 458
HpyF3I	CTNAG	2 cut(s)	471, 480
Hsp92II	CATG	2 cut(s)	36, 479
Kzo9I	GATC	7 cut(s)	138, 187, 198, 239, 306, 490, 525
LmnI	GCTCC	2 cut(s)	92, 367
Lsp1109I	GCAGC	2 cut(s)	40, 470
MaeI	CTAG	1 cut(s)	98
MalI	GATC	7 cut(s)	140, 189, 200, 241, 308, 492, 527
MboI	GATC	7 cut(s)	138, 187, 198, 239, 306, 490, 525
MboII	GAAGA	2 cut(s)	279, 316
MflI	RGATCY	3 cut(s)	138, 306, 490
MhlI	GDGCHC	3 cut(s)	47, 97, 420
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	5 cut(s)	176, 308, 366, 445, 504
MmeI	TCCRAC	3 cut(s)	305, 336, 404
MspI	CCGG	3 cut(s)	59, 263, 359
MwoI	GCNNNNNNNGC	4 cut(s)	34, 37, 272, 458
NcoI	CCATGG	1 cut(s)	32
NdeII	GATC	7 cut(s)	138, 187, 198, 239, 306, 490, 525
NlaIII	CATG	2 cut(s)	36, 479
NlaIV	GGNNCC	4 cut(s)	94, 363, 400, 492
NmeAIII	GCCGAG	2 cut(s)	487, 509
NspI	RCATGY	1 cut(s)	479
NspV	TTCGAA	1 cut(s)	269
PaeI	GCATGC	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	2 cut(s)	248, 530
PfeI	GAWTC	3 cut(s)	49, 148, 219
PinAI	ACCGGT	1 cut(s)	58
PkrI	GCNGC	6 cut(s)	30, 39, 211, 454, 457, 460
PleI	GAGTC	5 cut(s)	176, 308, 366, 444, 504
PpsI	GAGTC	5 cut(s)	176, 308, 366, 444, 504
PspFI	CCCAGC	1 cut(s)	23
PspN4I	GGNNCC	4 cut(s)	94, 363, 400, 492
PspPI	GGNCC	1 cut(s)	61
PsuI	RGATCY	3 cut(s)	138, 306, 490
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SatI	GCNGC	6 cut(s)	29, 38, 210, 453, 456, 459
Sau3AI	GATC	7 cut(s)	138, 187, 198, 239, 306, 490, 525
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	5 cut(s)	176, 308, 366, 445, 504
SduI	GDGCHC	3 cut(s)	47, 97, 420
SetI	ASST	8 cut(s)	70, 85, 287, 299, 415, 486, 523, 555
SfuI	TTCGAA	1 cut(s)	269
SinI	GGWCC	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
SphI	GCATGC	1 cut(s)	479
Sse9I	AATT	1 cut(s)	333
SsiI	CCGC	6 cut(s)	38, 177, 194, 210, 453, 456
SspMI	CTAG	1 cut(s)	98
StyI	CCWWGG	2 cut(s)	32, 409
TaaI	ACNGT	2 cut(s)	205, 398
TaqI	TCGA	7 cut(s)	242, 269, 341, 367, 424, 508, 524
TasI	AATT	1 cut(s)	333
TauI	GCSGC	4 cut(s)	40, 212, 455, 458
TfiI	GAWTC	3 cut(s)	49, 148, 219
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	2 cut(s)	28, 458
TspGWI	ACGGA	3 cut(s)	231, 342, 391
TspRI	CASTG	1 cut(s)	208
VneI	GTGCAC	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	61
XceI	RCATGY	1 cut(s)	479
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.