RLG00000005256

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012676
Physical Location & Seq
Reverse (-)
66256519 .. 66257058
540 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005256

Sequence Viewer

Length: 366 bp
ATGACCGCCTCCAAATCCGATTCTCTCCCTTCATCTCAGCCATGGTCGCCGTGCACGAATCACCCATTGGTCCAAGTCGTTCCTCAAATCGACAGCGATGACTTCGTCTCCGGCTTCGAAGGCAAGTCCAACCTCTTCTGGCGGCTTGATTCTGGATCTCCGACTCTCTCCTCTTCCTCTCAATTCCATCGACCACATCTCCATTTCAGGCTCCTCGACGACTCCCTCCAACTCCCTCCCTCCACGGTTCTGTCCTCCAAGGCAAGCACAATCGAACGCCGGCGAGTCCAAAGCATTGCACCGCCGCAGTCGAGAAGCCTCAGCAAGCTGAGGACGTGGATCCGAAAGATGATATTCGACGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.58

Weight (kDa)

9.85

Isoelectric Point (pI)

82.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 6, 142, 302, 305
AclWI GGATC 3 cut(s) 163, 334, 347
AcyI GRCGYC 1 cut(s) 360
AjiI CACGTC 1 cut(s) 336
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 112
Alw44I GTGCAC 1 cut(s) 52
AlwI GGATC 3 cut(s) 163, 334, 347
ApaLI GTGCAC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 53
AsuII TTCGAA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 56
BamHI GGATCC 1 cut(s) 339
Bbv12I GWGCWC 1 cut(s) 56
BbvCI CCTCAGC 2 cut(s) 320, 329
BccI CCATC 1 cut(s) 195
BceAI ACGGC 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 112
BisI GCNGC 2 cut(s) 143, 305
BlsI GCNGC 2 cut(s) 144, 306
Bme18I GGWCC 1 cut(s) 70
BmgBI CACGTC 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 2 cut(s) 212, 341
Bpu10I CCTNAGC 2 cut(s) 320, 329
Bpu14I TTCGAA 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 3 cut(s) 41, 243, 258
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 183, 213
Bse118I RCCGGY 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 294
BseDI CCNNGG 3 cut(s) 41, 243, 258
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 3 cut(s) 50, 320, 334
BseRI GAGGAG 2 cut(s) 160, 203
BseSI GKGCMC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 56
BsiSI CCGG 2 cut(s) 111, 280
BsmAI GTCTC 1 cut(s) 112
BsmBI CGTCTC 1 cut(s) 112
Bsp119I TTCGAA 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 155, 339
Bsp19I CCATGG 1 cut(s) 41
BspACI CCGC 4 cut(s) 6, 142, 302, 305
BspCNI CTCAG 3 cut(s) 49, 321, 333
BspLI GGNNCC 2 cut(s) 212, 341
BspPI GGATC 3 cut(s) 163, 334, 347
BspT104I TTCGAA 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 279
BssAI RCCGGY 1 cut(s) 279
BssECI CCNNGG 3 cut(s) 41, 243, 258
BssMI GATC 2 cut(s) 155, 339
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 2 cut(s) 41, 258
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 2 cut(s) 140, 178
BstACI GRCGYC 1 cut(s) 360
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 3 cut(s) 265, 281, 326
BstDEI CTNAG 3 cut(s) 36, 320, 329
BstDSI CCRYGG 2 cut(s) 41, 243
BstKTI GATC 2 cut(s) 158, 342
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 2 cut(s) 155, 339
BstMWI GCNNNNNNNGC 2 cut(s) 46, 120
BstSLI GKGCMC 1 cut(s) 56
BstX2I RGATCY 2 cut(s) 155, 339
BstYI RGATCY 2 cut(s) 155, 339
BtgI CCRYGG 2 cut(s) 41, 243
BtgZI GCGATG 1 cut(s) 111
BtrI CACGTC 1 cut(s) 336
Cac8I GCNNGC 3 cut(s) 265, 281, 326
Cfr10I RCCGGY 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 70
CviAII CATG 1 cut(s) 42
CviJI RGCY 6 cut(s) 40, 114, 145, 211, 318, 328
CviKI_1 RGCY 6 cut(s) 40, 114, 145, 211, 318, 328
DdeI CTNAG 3 cut(s) 36, 320, 329
DpnI GATC 2 cut(s) 157, 341
DpnII GATC 2 cut(s) 155, 339
Eam1104I CTCTTC 2 cut(s) 140, 178
EarI CTCTTC 2 cut(s) 140, 178
Eco130I CCWWGG 2 cut(s) 41, 258
Eco47I GGWCC 1 cut(s) 70
EcoT14I CCWWGG 2 cut(s) 41, 258
ErhI CCWWGG 2 cut(s) 41, 258
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 1 cut(s) 45
FaiI YATR 1 cut(s) 43
FatI CATG 1 cut(s) 41
Fnu4HI GCNGC 2 cut(s) 143, 305
Fsp4HI GCNGC 2 cut(s) 143, 305
GluI GCNGC 2 cut(s) 143, 305
HapII CCGG 2 cut(s) 111, 280
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 1 cut(s) 45
HinfI GANTC 6 cut(s) 20, 58, 149, 163, 221, 285
HpaII CCGG 2 cut(s) 111, 280
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 3 cut(s) 19, 162, 344
Hpy188III TCNNGA 2 cut(s) 153, 312
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 2 cut(s) 221, 362
HpyAV CCTTC 2 cut(s) 39, 113
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 2 cut(s) 54, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 120
HpyF3I CTNAG 3 cut(s) 36, 320, 329
HpySE526I ACGT 1 cut(s) 335
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 1 cut(s) 45
KroI GCCGGC 1 cut(s) 279
KroNI GCCGGC 1 cut(s) 281
Kzo9I GATC 2 cut(s) 155, 339
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 5 cut(s) 124, 124, 138, 193, 293
MaeII ACGT 1 cut(s) 335
MalI GATC 2 cut(s) 157, 341
MboI GATC 2 cut(s) 155, 339
MboII GAAGA 2 cut(s) 127, 165
MflI RGATCY 2 cut(s) 155, 339
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 1 cut(s) 182
MlyI GAGTC 3 cut(s) 157, 215, 294
MmeI TCCRAC 3 cut(s) 153, 185, 253
MreI CGCCGGCG 1 cut(s) 279
MroNI GCCGGC 1 cut(s) 279
MspI CCGG 2 cut(s) 111, 280
MwoI GCNNNNNNNGC 2 cut(s) 46, 120
NaeI GCCGGC 1 cut(s) 281
NcoI CCATGG 1 cut(s) 41
NdeII GATC 2 cut(s) 155, 339
NgoMIV GCCGGC 1 cut(s) 279
NlaIII CATG 1 cut(s) 45
NlaIV GGNNCC 2 cut(s) 212, 341
NspV TTCGAA 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PdiI GCCGGC 1 cut(s) 281
PfeI GAWTC 3 cut(s) 20, 58, 149
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 2 cut(s) 144, 306
PleI GAGTC 3 cut(s) 157, 215, 293
PpsI GAGTC 3 cut(s) 157, 215, 293
PspN4I GGNNCC 2 cut(s) 212, 341
PspPI GGNCC 1 cut(s) 70
PsuI RGATCY 2 cut(s) 155, 339
PsyI GACNNNGTC 1 cut(s) 104
SatI GCNGC 2 cut(s) 143, 305
Sau3AI GATC 2 cut(s) 155, 339
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 3 cut(s) 157, 215, 294
SduI GDGCHC 1 cut(s) 56
SetI ASST 3 cut(s) 135, 330, 338
SfuI TTCGAA 1 cut(s) 117
SgrAI CRCCGGYG 1 cut(s) 279
SinI GGWCC 1 cut(s) 70
Sse9I AATT 1 cut(s) 182
SsiI CCGC 4 cut(s) 6, 142, 302, 305
StyI CCWWGG 2 cut(s) 41, 258
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 1 cut(s) 338
TaqI TCGA 7 cut(s) 90, 117, 190, 216, 273, 311, 357
TasI AATT 1 cut(s) 182
TauI GCSGC 2 cut(s) 145, 307
TfiI GAWTC 3 cut(s) 20, 58, 149
TspDTI ATGAA 1 cut(s) 21
Tth111I GACNNNGTC 1 cut(s) 104
VneI GTGCAC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.