Rh7CG266500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012676
Physical Location & Seq
Forward (+)
26154734 .. 26156790
2057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG266500.1

Sequence Viewer

Length: 294 bp
ATGGAAAAACTGGATCGCGTTGGTCGACTGAAATTGAATCTCCGGTGCAAGGCGCCGTTTCGCAACTGTATCTCTACAGCAACAGCTCCAACAAGTCTCATGCCTCCACCGCCGCCGTCCCCGCTTAACCTTTCACAACGATTTTCCGCTCCGAAACACCGACCAAGGCGCTTTCCGGCGAACTCTCGCTCCTGCTTTGGAGCTCATTGGGTTGAAGGCCATAAGCCTAGGGCCGGTCTTGTTTGCAATGAAAATAAATGGGGACAAAGATATACTCGTTGCCATCAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.06

Weight (kDa)

11.15

Isoelectric Point (pI)

59.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 52
AccBSI CCGCTC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 25
AccII CGCG 1 cut(s) 18
AciI CCGC 4 cut(s) 110, 113, 122, 147
AclWI GGATC 1 cut(s) 21
AcyI GRCGYC 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 49, 233
AgsI TTSAA 2 cut(s) 37, 215
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 2 cut(s) 86, 203
AluI AGCT 2 cut(s) 86, 203
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 21
AoxI GGCC 2 cut(s) 217, 231
AspA2I CCTAGG 1 cut(s) 227
AspLEI GCGC 2 cut(s) 55, 171
AspS9I GGNCC 1 cut(s) 231
AvrII CCTAGG 1 cut(s) 227
BanI GGYRCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 205
BccI CCATC 1 cut(s) 291
BceAI ACGGC 2 cut(s) 40, 100
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 1 cut(s) 75
BfoI RGCGCY 2 cut(s) 56, 172
BisI GCNGC 1 cut(s) 113
BlnI CCTAGG 1 cut(s) 227
BlsI GCNGC 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 54
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 164, 227
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 233
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 15
Bse3DI GCAATG 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 164, 227
BseLI CCNNNNNNNGG 2 cut(s) 49, 233
BseMI GCAATG 1 cut(s) 253
BseNI ACTGG 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 18
BshFI GGCC 2 cut(s) 219, 233
BshNI GGYRCC 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 205
BsiSI CCGG 3 cut(s) 43, 176, 234
BslFI GGGAC 2 cut(s) 103, 276
BslI CCNNNNNNNGG 2 cut(s) 49, 233
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 2 cut(s) 103, 276
BsnI GGCC 2 cut(s) 219, 233
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 13
BspACI CCGC 4 cut(s) 110, 113, 122, 147
BspANI GGCC 2 cut(s) 219, 233
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 54
BspPI GGATC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 52
BsrBI CCGCTC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 253
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 1 cut(s) 15
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 2 cut(s) 164, 227
BssMI GATC 1 cut(s) 13
BssNI GRCGYC 1 cut(s) 53
BssT1I CCWWGG 2 cut(s) 164, 227
Bst4CI ACNGT 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 53
BstFNI CGCG 1 cut(s) 18
BstH2I RGCGCY 2 cut(s) 56, 172
BstHHI GCGC 2 cut(s) 55, 171
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 2 cut(s) 109, 121
BstSFI CTRYAG 1 cut(s) 75
BstUI CGCG 1 cut(s) 18
BsuRI GGCC 2 cut(s) 219, 233
CfoI GCGC 2 cut(s) 55, 171
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 231
CviAII CATG 1 cut(s) 100
CviJI RGCY 5 cut(s) 86, 203, 219, 226, 233
CviKI_1 RGCY 5 cut(s) 86, 203, 219, 226, 233
DinI GGCGCC 1 cut(s) 54
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 203
Eco130I CCWWGG 2 cut(s) 164, 227
Eco24I GRGCYC 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 203
EcoT14I CCWWGG 2 cut(s) 164, 227
EcoT38I GRGCYC 1 cut(s) 205
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
ErhI CCWWGG 2 cut(s) 164, 227
FaeI CATG 1 cut(s) 103
FaiI YATR 3 cut(s) 101, 222, 273
FaqI GGGAC 2 cut(s) 103, 276
FatI CATG 1 cut(s) 99
FauI CCCGC 1 cut(s) 129
FblI GTMKAC 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 113
FspBI CTAG 1 cut(s) 228
GlaI GCGC 2 cut(s) 54, 170
GluI GCNGC 1 cut(s) 113
HaeII RGCGCY 2 cut(s) 56, 172
HaeIII GGCC 2 cut(s) 219, 233
HapII CCGG 3 cut(s) 43, 176, 234
HhaI GCGC 2 cut(s) 55, 171
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 1 cut(s) 103
Hin6I GCGC 2 cut(s) 53, 169
HinP1I GCGC 2 cut(s) 53, 169
HincII GTYRAC 1 cut(s) 26
HindII GTYRAC 1 cut(s) 26
HinfI GANTC 1 cut(s) 37
HpaII CCGG 3 cut(s) 43, 176, 234
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 1 cut(s) 153
Hpy8I GTNNAC 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4V TGCA 2 cut(s) 48, 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 121
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 1 cut(s) 103
HspAI GCGC 2 cut(s) 53, 169
KasI GGCGCC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 4 cut(s) 91, 154, 194, 200
LpnPI CCDG 4 cut(s) 56, 189, 205, 247
MaeI CTAG 1 cut(s) 228
MalI GATC 1 cut(s) 15
MbiI CCGCTC 1 cut(s) 149
MboI GATC 1 cut(s) 13
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 1 cut(s) 32
Mly113I GGCGCC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 1 cut(s) 114
MseI TTAA 1 cut(s) 126
MspI CCGG 3 cut(s) 43, 176, 234
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 109, 121
NarI GGCGCC 1 cut(s) 53
NdeII GATC 1 cut(s) 13
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 114
PluTI GGCGCC 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 231
SacI GAGCTC 1 cut(s) 205
SalI GTCGAC 1 cut(s) 24
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 1 cut(s) 231
SduI GDGCHC 1 cut(s) 205
SetI ASST 3 cut(s) 88, 132, 205
SfcI CTRYAG 1 cut(s) 75
SfoI GGCGCC 1 cut(s) 54
Sse9I AATT 1 cut(s) 32
SsiI CCGC 4 cut(s) 110, 113, 122, 147
SspDI GGCGCC 1 cut(s) 52
SspMI CTAG 1 cut(s) 228
SstI GAGCTC 1 cut(s) 205
StyI CCWWGG 2 cut(s) 164, 227
TaaI ACNGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 25
TasI AATT 1 cut(s) 32
TauI GCSGC 1 cut(s) 115
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TspDTI ATGAA 1 cut(s) 264
XmaJI CCTAGG 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 25
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.