RLG00000018852

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012676
Physical Location & Seq
Reverse (-)
37860628 .. 37861190
563 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018852

Sequence Viewer

Length: 480 bp
ATGACCACCTCCAACTCCGATTCTCTCCCTCTGTCTCAGCCATGGCCACCGTGCACGAATCACCCACTGGTCCAAGTCGTTCCTCAAATTCTTTCTACTTCGCCGTTATCTCTCTCCGCCAACTCCGATCTCTCGCAGATTACTATCACCTTCGACAGATTCCATTGCTTCTCTCACAGATCGATAGCGACGACTTCATCTCCGGCTTCGAAGGCAAGTCCAACATCTTCTAGCGGCTTGATACTGGATCTCCGACTCTCTCCTCTTCCTCTCAATTCGATCGACCACATCTCCATCTCAGGCTCCTCGACGACTCTGTCCCTCCACGGTTCCGTCCTCCAAGGCAAGCACAATCGAACGTCAGCTAGTCCAAACCATAGCTCCGCCGCAGCTGAGGTCGTGGATCTGAACGATGATGCTCGACTCCTAAAACCTCCGATCTCGGCGAGTATTTTCGTCTCTGACCTTTTCAACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

16.83

Weight (kDa)

6.34

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 316
AciI CCGC 4 cut(s) 117, 234, 384, 387
AclWI GGATC 2 cut(s) 255, 411
AcoI YGGCCR 1 cut(s) 44
AcsI RAATTY 1 cut(s) 87
AgsI TTSAA 1 cut(s) 472
AluBI AGCT 3 cut(s) 365, 381, 392
AluI AGCT 3 cut(s) 365, 381, 392
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 2 cut(s) 39, 463
Alw44I GTGCAC 1 cut(s) 52
AlwI GGATC 2 cut(s) 255, 411
AoxI GGCC 1 cut(s) 44
ApaLI GTGCAC 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 2 cut(s) 53, 139
AsuII TTCGAA 1 cut(s) 209
AvaII GGWCC 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 56
BalI TGGCCA 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 56
BbvCI CCTCAGC 1 cut(s) 393
BbvI GCAGC 1 cut(s) 401
BccI CCATC 1 cut(s) 302
BceAI ACGGC 1 cut(s) 88
BcoDI GTCTC 2 cut(s) 39, 463
BfaI CTAG 2 cut(s) 231, 366
BisI GCNGC 3 cut(s) 235, 387, 390
BlsI GCNGC 3 cut(s) 236, 388, 391
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 2 cut(s) 304, 331
BmsI GCATC 1 cut(s) 406
Bpu10I CCTNAGC 1 cut(s) 393
Bpu14I TTCGAA 1 cut(s) 209
Bsa29I ATCGAT 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 143
BsaJI CCNNGG 3 cut(s) 41, 325, 340
BsaXI ACNNNNNCTCC 8 cut(s) 184, 214, 234, 264, 275, 305, 365, 395
Bse1I ACTGG 2 cut(s) 72, 249
Bse3DI GCAATG 1 cut(s) 163
Bse8I GATNNNNATC 1 cut(s) 143
BseCI ATCGAT 1 cut(s) 182
BseDI CCNNGG 3 cut(s) 41, 325, 340
BseJI GATNNNNATC 1 cut(s) 143
BseMI GCAATG 1 cut(s) 163
BseMII CTCAG 3 cut(s) 50, 312, 384
BseNI ACTGG 2 cut(s) 72, 249
BseRI GAGGAG 2 cut(s) 252, 295
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 1 cut(s) 401
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 1 cut(s) 46
BshVI ATCGAT 1 cut(s) 182
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 56
BsiSI CCGG 1 cut(s) 203
BslFI GGGAC 1 cut(s) 304
BsmAI GTCTC 2 cut(s) 39, 463
BsmBI CGTCTC 1 cut(s) 463
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 6 cut(s) 127, 179, 247, 279, 403, 438
Bsp19I CCATGG 1 cut(s) 41
BspACI CCGC 4 cut(s) 117, 234, 384, 387
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 3 cut(s) 49, 311, 385
BspDI ATCGAT 1 cut(s) 182
BspLI GGNNCC 2 cut(s) 304, 331
BspPI GGATC 2 cut(s) 255, 411
BspT104I TTCGAA 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 163
BsrI ACTGG 2 cut(s) 72, 249
BssECI CCNNGG 3 cut(s) 41, 325, 340
BssMI GATC 6 cut(s) 127, 179, 247, 279, 403, 438
BssT1I CCWWGG 2 cut(s) 41, 340
Bst4CI ACNGT 2 cut(s) 51, 329
Bst6I CTCTTC 1 cut(s) 270
BstBI TTCGAA 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 347
BstDEI CTNAG 3 cut(s) 36, 298, 393
BstDSI CCRYGG 2 cut(s) 41, 325
BstKTI GATC 6 cut(s) 130, 182, 250, 282, 406, 441
BstMAI GTCTC 2 cut(s) 39, 463
BstMBI GATC 6 cut(s) 127, 179, 247, 279, 403, 438
BstMCI CGRYCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstSLI GKGCMC 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 401
BstX2I RGATCY 2 cut(s) 247, 403
BstYI RGATCY 2 cut(s) 247, 403
Bsu15I ATCGAT 1 cut(s) 182
BsuRI GGCC 1 cut(s) 46
BsuTUI ATCGAT 1 cut(s) 182
BtgI CCRYGG 2 cut(s) 41, 325
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 70
ClaI ATCGAT 1 cut(s) 182
CviAII CATG 1 cut(s) 42
CviJI RGCY 8 cut(s) 40, 46, 206, 237, 303, 365, 381, 392
CviKI_1 RGCY 8 cut(s) 40, 46, 206, 237, 303, 365, 381, 392
DdeI CTNAG 3 cut(s) 36, 298, 393
DpnI GATC 6 cut(s) 129, 181, 249, 281, 405, 440
DpnII GATC 6 cut(s) 127, 179, 247, 279, 403, 438
DrdI GACNNNNNNGTC 1 cut(s) 316
DseDI GACNNNNNNGTC 1 cut(s) 316
EaeI YGGCCR 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
EciI GGCGGA 2 cut(s) 106, 373
Eco130I CCWWGG 2 cut(s) 41, 340
Eco47I GGWCC 1 cut(s) 70
EcoT14I CCWWGG 2 cut(s) 41, 340
ErhI CCWWGG 2 cut(s) 41, 340
Esp3I CGTCTC 1 cut(s) 463
FaeI CATG 1 cut(s) 45
FaiI YATR 2 cut(s) 43, 378
FaqI GGGAC 1 cut(s) 304
FatI CATG 1 cut(s) 41
Fnu4HI GCNGC 3 cut(s) 235, 387, 390
Fsp4HI GCNGC 3 cut(s) 235, 387, 390
FspBI CTAG 2 cut(s) 231, 366
GluI GCNGC 3 cut(s) 235, 387, 390
HaeIII GGCC 1 cut(s) 46
HapII CCGG 1 cut(s) 203
Hin1II CATG 1 cut(s) 45
HinfI GANTC 6 cut(s) 20, 58, 159, 255, 313, 423
HpaII CCGG 1 cut(s) 203
HphI GGTGA 2 cut(s) 53, 139
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 6 cut(s) 19, 127, 254, 408, 438, 463
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 2 cut(s) 193, 313
HpyAV CCTTC 2 cut(s) 160, 205
HpyCH4III ACNGT 2 cut(s) 51, 329
HpyCH4IV ACGT 1 cut(s) 359
HpyCH4V TGCA 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 3 cut(s) 36, 298, 393
HpySE526I ACGT 1 cut(s) 359
Hsp92II CATG 1 cut(s) 45
Kzo9I GATC 6 cut(s) 127, 179, 247, 279, 403, 438
LmnI GCTCC 2 cut(s) 308, 386
LpnPI CCDG 4 cut(s) 53, 216, 230, 285
Lsp1109I GCAGC 1 cut(s) 401
LweI GCATC 1 cut(s) 406
MaeI CTAG 2 cut(s) 231, 366
MaeII ACGT 1 cut(s) 359
MalI GATC 6 cut(s) 129, 181, 249, 281, 405, 440
MboI GATC 6 cut(s) 127, 179, 247, 279, 403, 438
MboII GAAGA 2 cut(s) 219, 257
MflI RGATCY 2 cut(s) 247, 403
MhlI GDGCHC 1 cut(s) 56
MlsI TGGCCA 1 cut(s) 46
MluCI AATT 2 cut(s) 87, 274
MluNI TGGCCA 1 cut(s) 46
MlyI GAGTC 3 cut(s) 249, 307, 417
MmeI TCCRAC 3 cut(s) 36, 245, 277
Mox20I TGGCCA 1 cut(s) 46
MscI TGGCCA 1 cut(s) 46
Msp20I TGGCCA 1 cut(s) 46
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 212
NcoI CCATGG 1 cut(s) 41
NdeII GATC 6 cut(s) 127, 179, 247, 279, 403, 438
NlaIII CATG 1 cut(s) 45
NlaIV GGNNCC 2 cut(s) 304, 331
NmeAIII GCCGAG 1 cut(s) 422
NspV TTCGAA 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PfeI GAWTC 3 cut(s) 20, 58, 159
PflFI GACNNNGTC 1 cut(s) 316
PkrI GCNGC 3 cut(s) 236, 388, 391
Ple19I CGATCG 1 cut(s) 282
PleI GAGTC 3 cut(s) 249, 307, 417
PpsI GAGTC 3 cut(s) 249, 307, 417
PspN4I GGNNCC 2 cut(s) 304, 331
PspPI GGNCC 1 cut(s) 70
PsuI RGATCY 2 cut(s) 247, 403
PsyI GACNNNGTC 1 cut(s) 316
PvuI CGATCG 1 cut(s) 282
PvuII CAGCTG 1 cut(s) 392
SatI GCNGC 3 cut(s) 235, 387, 390
Sau3AI GATC 6 cut(s) 127, 179, 247, 279, 403, 438
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 3 cut(s) 249, 307, 417
SduI GDGCHC 1 cut(s) 56
SetI ASST 9 cut(s) 11, 152, 362, 367, 383, 394, 399, 436, 468
SfaNI GCATC 1 cut(s) 406
SfuI TTCGAA 1 cut(s) 209
SinI GGWCC 1 cut(s) 70
Sse9I AATT 2 cut(s) 87, 274
SsiI CCGC 4 cut(s) 117, 234, 384, 387
SspMI CTAG 2 cut(s) 231, 366
StyI CCWWGG 2 cut(s) 41, 340
TaaI ACNGT 2 cut(s) 51, 329
TaiI ACGT 1 cut(s) 362
TaqI TCGA 8 cut(s) 153, 182, 209, 278, 282, 308, 355, 421
TasI AATT 2 cut(s) 87, 274
TauI GCSGC 2 cut(s) 237, 389
TfiI GAWTC 3 cut(s) 20, 58, 159
TscAI CASTG 1 cut(s) 72
TseI GCWGC 1 cut(s) 389
TspDTI ATGAA 1 cut(s) 186
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 1 cut(s) 72
Tth111I GACNNNGTC 1 cut(s) 316
VneI GTGCAC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 1 cut(s) 87
XspI CTAG 2 cut(s) 231, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.