Rroxscaffold_7G00193240

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012676
Physical Location & Seq
Forward (+)
34663531 .. 34682518
18988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00193240.1

Sequence Viewer

Length: 759 bp
ATGGTTTCCAACACCAAGGTTTCCAAGAATCACCGAATACTTCCACAAAAATTTTCCAAGACCGGTTATCCTTTTCAAATAAAAGAGGTGCGAGAATTCGAACTTAAAATTACTACGTTGTTTTCTAGCAGCCTTAGTTTTCCAAGGAATGACTTGATCTCTTTGTCATCATATCACCACAAGAAGCGAGAGGATCGGAGCCTTCTCTCACGTAACCATGTCGAGCTCAAGACGCTCACCGACTACATTCACCTCCACGACCGCCGGGATCGCATGCTCCCAAGCCCACCCAACCGTAATAACTTTGGATCCACCGACGTCAGCCCCTCCGGCTTCTTCCCATTCCCAGCCGGTAGCTCTATCTCTGTCCTCGGCACTCTCTCAATGCGGCTTGTCGTCTCGATTACACGCATTTATATGCATCGTTATGGCGTTCGACTTACTTACTCAATCGTAGCCCGTCACCCTAACGGGGTTATGGCGTCCGACTTCAATAGCCTCTGTCACTACCTTGACACTAGATCTATAGACCGAAACCATTTACAAAGTTCCAAATCAGCTTTGCTTGCAAGAGGTGAAGCAGTAGTGCAGCAATGCAAGGAGTATCATCAGGCATCAGATGCGGTGTCAAATACCAAGTCAATTAAGCACAGGCCACCGACAAGGACTTCCTTCTCTCAAGGAAAATATTCGGTCCCTGTTCTCTATGGGATTCCTCTTTCTCTCTCTGCCTCTCTCTCGCTCCTCGCATTTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

28.57

Weight (kDa)

10.21

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR11_1st PF23751 96 - 135 2.9e-10 WDR11 first beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 321
AciI CCGC 3 cut(s) 262, 388, 623
AclWI GGATC 4 cut(s) 201, 276, 303, 316
AcsI RAATTY 2 cut(s) 50, 95
AcyI GRCGYC 2 cut(s) 318, 482
AfiI CCNNNNNNNGG 1 cut(s) 472
AgeI ACCGGT 1 cut(s) 62
AgsI TTSAA 2 cut(s) 77, 493
AluBI AGCT 3 cut(s) 226, 357, 560
AluI AGCT 3 cut(s) 226, 357, 560
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 403
AlwI GGATC 4 cut(s) 201, 276, 303, 316
AoxI GGCC 1 cut(s) 653
ApeKI GCWGC 2 cut(s) 129, 589
ApoI RAATTY 2 cut(s) 50, 95
ArsI GACNNNNNNTTYG 2 cut(s) 623, 655
AsiGI ACCGGT 1 cut(s) 62
Asp700I GAANNNNTTC 1 cut(s) 688
AspS9I GGNCC 1 cut(s) 694
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 6 cut(s) 23, 167, 229, 242, 455, 587
AsuII TTCGAA 1 cut(s) 99
AvaII GGWCC 1 cut(s) 694
BamHI GGATCC 1 cut(s) 308
BanII GRGCYC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 141, 601
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 403
BfaI CTAG 2 cut(s) 126, 519
BfmI CTRYAG 1 cut(s) 525
BglI GCCNNNNNGGC 1 cut(s) 330
BglII AGATCT 1 cut(s) 521
BisI GCNGC 3 cut(s) 130, 389, 590
BlsI GCNGC 3 cut(s) 131, 390, 591
Bme1390I CCNGG 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 694
BmgT120I GGNCC 1 cut(s) 694
BmiI GGNNCC 3 cut(s) 200, 310, 696
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 3 cut(s) 430, 610, 623
Bpu14I TTCGAA 1 cut(s) 99
BpuEI CTTGAG 2 cut(s) 212, 663
BpuMI CCSGG 1 cut(s) 266
BsaAI YACGTR 1 cut(s) 212
BsaHI GRCGYC 2 cut(s) 318, 482
BsaJI CCNNGG 3 cut(s) 15, 143, 370
BsaWI WCCGGW 1 cut(s) 62
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse118I RCCGGY 2 cut(s) 62, 350
Bse3DI GCAATG 1 cut(s) 599
BseDI CCNNGG 3 cut(s) 15, 143, 370
BseLI CCNNNNNNNGG 1 cut(s) 472
BseMI GCAATG 1 cut(s) 599
BseRI GAGGAG 1 cut(s) 734
BseXI GCAGC 2 cut(s) 141, 601
BseYI CCCAGC 1 cut(s) 346
BsgI GTGCAG 1 cut(s) 608
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 1 cut(s) 655
BshTI ACCGGT 1 cut(s) 62
BsiEI CGRYCG 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 4 cut(s) 63, 265, 330, 351
BslFI GGGAC 1 cut(s) 680
BslI CCNNNNNNNGG 1 cut(s) 472
BsmAI GTCTC 1 cut(s) 403
BsmBI CGTCTC 1 cut(s) 403
BsmFI GGGAC 1 cut(s) 680
BsnI GGCC 1 cut(s) 655
Bsp119I TTCGAA 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 5 cut(s) 156, 193, 268, 308, 521
BspACI CCGC 3 cut(s) 262, 388, 623
BspANI GGCC 1 cut(s) 655
BspLI GGNNCC 3 cut(s) 200, 310, 696
BspPI GGATC 4 cut(s) 201, 276, 303, 316
BspT104I TTCGAA 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 599
BsrFI RCCGGY 2 cut(s) 62, 350
BssAI RCCGGY 2 cut(s) 62, 350
BssECI CCNNGG 3 cut(s) 15, 143, 370
BssMI GATC 5 cut(s) 156, 193, 268, 308, 521
BssNI GRCGYC 2 cut(s) 318, 482
BssT1I CCWWGG 2 cut(s) 15, 143
Bst4CI ACNGT 1 cut(s) 296
BstACI GRCGYC 2 cut(s) 318, 482
BstAPI GCANNNNNTGC 1 cut(s) 620
BstBAI YACGTR 1 cut(s) 212
BstBI TTCGAA 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 275, 567
BstDEI CTNAG 1 cut(s) 134
BstKTI GATC 5 cut(s) 159, 196, 271, 311, 524
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 5 cut(s) 156, 193, 268, 308, 521
BstMCI CGRYCG 1 cut(s) 262
BstMWI GCNNNNNNNGC 5 cut(s) 232, 270, 330, 566, 620
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 264
BstSFI CTRYAG 1 cut(s) 525
BstV1I GCAGC 2 cut(s) 141, 601
BstX2I RGATCY 2 cut(s) 308, 521
BstYI RGATCY 2 cut(s) 308, 521
BsuRI GGCC 1 cut(s) 655
Cac8I GCNNGC 2 cut(s) 275, 567
Cfr10I RCCGGY 2 cut(s) 62, 350
Cfr13I GGNCC 1 cut(s) 694
CseI GACGC 2 cut(s) 241, 471
CspAI ACCGGT 1 cut(s) 62
CviAII CATG 2 cut(s) 218, 274
DdeI CTNAG 1 cut(s) 134
DpnI GATC 5 cut(s) 158, 195, 270, 310, 523
DpnII GATC 5 cut(s) 156, 193, 268, 308, 521
Ecl136II GAGCTC 1 cut(s) 226
Eco130I CCWWGG 2 cut(s) 15, 143
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 694
Eco53kI GAGCTC 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 95
EcoT14I CCWWGG 2 cut(s) 15, 143
EcoT22I ATGCAT 1 cut(s) 423
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 2 cut(s) 15, 143
Esp3I CGTCTC 1 cut(s) 403
FaeI CATG 2 cut(s) 221, 277
FaiI YATR 9 cut(s) 172, 219, 275, 417, 419, 429, 479, 527, 708
FaqI GGGAC 1 cut(s) 680
FatI CATG 2 cut(s) 217, 273
Fnu4HI GCNGC 3 cut(s) 130, 389, 590
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 3 cut(s) 130, 389, 590
FspBI CTAG 2 cut(s) 126, 519
GluI GCNGC 3 cut(s) 130, 389, 590
GsaI CCCAGC 1 cut(s) 350
HaeIII GGCC 1 cut(s) 655
HapII CCGG 4 cut(s) 63, 265, 330, 351
HgaI GACGC 2 cut(s) 241, 471
Hin1I GRCGYC 2 cut(s) 318, 482
Hin1II CATG 2 cut(s) 221, 277
HinfI GANTC 2 cut(s) 28, 712
HpaII CCGG 4 cut(s) 63, 265, 330, 351
HphI GGTGA 6 cut(s) 23, 167, 229, 242, 455, 587
Hpy188I TCNGA 3 cut(s) 198, 487, 619
Hpy188III TCNNGA 2 cut(s) 229, 400
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 2 cut(s) 212, 682
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 3 cut(s) 116, 211, 318
HpyCH4V TGCA 4 cut(s) 421, 569, 589, 597
HpyF10VI GCNNNNNNNGC 5 cut(s) 232, 270, 330, 566, 620
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 3 cut(s) 116, 211, 318
Hsp92I GRCGYC 2 cut(s) 318, 482
Hsp92II CATG 2 cut(s) 221, 277
Kzo9I GATC 5 cut(s) 156, 193, 268, 308, 521
LmnI GCTCC 3 cut(s) 198, 282, 747
LpnPI CCDG 8 cut(s) 76, 278, 343, 360, 364, 596, 637, 711
Lsp1109I GCAGC 2 cut(s) 141, 601
LweI GCATC 3 cut(s) 430, 610, 623
MaeI CTAG 2 cut(s) 126, 519
MaeII ACGT 3 cut(s) 116, 211, 318
MaeIII GTNAC 3 cut(s) 212, 461, 503
MalI GATC 5 cut(s) 158, 195, 270, 310, 523
MboI GATC 5 cut(s) 156, 193, 268, 308, 521
MboII GAAGA 1 cut(s) 328
MflI RGATCY 2 cut(s) 308, 521
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 4 cut(s) 50, 95, 108, 642
MmeI TCCRAC 2 cut(s) 33, 510
Mph1103I ATGCAT 1 cut(s) 423
MroXI GAANNNNTTC 1 cut(s) 688
MseI TTAA 2 cut(s) 105, 645
MslI CAYNNNNRTG 2 cut(s) 416, 426
MspI CCGG 4 cut(s) 63, 265, 330, 351
MspR9I CCNGG 1 cut(s) 266
MwoI GCNNNNNNNGC 5 cut(s) 232, 270, 330, 566, 620
NciI CCSGG 1 cut(s) 266
NdeII GATC 5 cut(s) 156, 193, 268, 308, 521
NlaIII CATG 2 cut(s) 221, 277
NlaIV GGNNCC 3 cut(s) 200, 310, 696
NmeAIII GCCGAG 1 cut(s) 351
NmuCI GTSAC 2 cut(s) 461, 503
NsiI ATGCAT 1 cut(s) 423
NspI RCATGY 1 cut(s) 277
NspV TTCGAA 1 cut(s) 99
PaeI GCATGC 1 cut(s) 277
PdmI GAANNNNTTC 1 cut(s) 688
PfeI GAWTC 2 cut(s) 28, 712
PinAI ACCGGT 1 cut(s) 62
PkrI GCNGC 3 cut(s) 131, 390, 591
Ppu21I YACGTR 1 cut(s) 212
Psp124BI GAGCTC 1 cut(s) 228
PspFI CCCAGC 1 cut(s) 346
PspN4I GGNNCC 3 cut(s) 200, 310, 696
PspPI GGNCC 1 cut(s) 694
PsuI RGATCY 2 cut(s) 308, 521
RseI CAYNNNNRTG 2 cut(s) 416, 426
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 105, 645
SatI GCNGC 3 cut(s) 130, 389, 590
Sau3AI GATC 5 cut(s) 156, 193, 268, 308, 521
Sau96I GGNCC 1 cut(s) 694
ScrFI CCNGG 1 cut(s) 266
SduI GDGCHC 1 cut(s) 228
SfaNI GCATC 3 cut(s) 430, 610, 623
SfcI CTRYAG 1 cut(s) 525
SfuI TTCGAA 1 cut(s) 99
SinI GGWCC 1 cut(s) 694
SmiMI CAYNNNNRTG 2 cut(s) 416, 426
SmlI CTYRAG 2 cut(s) 227, 678
SmoI CTYRAG 2 cut(s) 227, 678
SphI GCATGC 1 cut(s) 277
Sse9I AATT 4 cut(s) 50, 95, 108, 642
SsiI CCGC 3 cut(s) 262, 388, 623
SspI AATATT 1 cut(s) 689
SspMI CTAG 2 cut(s) 126, 519
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 2 cut(s) 15, 143
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 3 cut(s) 119, 214, 321
TaqI TCGA 4 cut(s) 99, 222, 401, 436
TaqII GACCGA 2 cut(s) 546, 682
TasI AATT 4 cut(s) 50, 95, 108, 642
TauI GCSGC 1 cut(s) 391
TfiI GAWTC 2 cut(s) 28, 712
Tru1I TTAA 2 cut(s) 105, 645
Tru9I TTAA 2 cut(s) 105, 645
TseFI GTSAC 2 cut(s) 461, 503
TseI GCWGC 2 cut(s) 129, 589
Tsp45I GTSAC 2 cut(s) 461, 503
VpaK11BI GGWCC 1 cut(s) 694
XapI RAATTY 2 cut(s) 50, 95
XceI RCATGY 1 cut(s) 277
XmnI GAANNNNTTC 1 cut(s) 688
XspI CTAG 2 cut(s) 126, 519
ZraI GACGTC 1 cut(s) 319
Zsp2I ATGCAT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.