RLG00000034611

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012676
Physical Location & Seq
Forward (+)
46016840 .. 46017582
743 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034611

Sequence Viewer

Length: 498 bp
ATGCCCGCCTCCAACTCCAATTCTCTCCCTCCATCTCAGCCATGGCCGTTGTGCACGAATCACCCACTGGTCCAAGCCGTTCCTCAAGTACCTAATACTGGAGCCCTAGCCCAAATCAAGGACTCCAAATCTCACATAATCAATTGGATCTCCCAGATCCTTTCGATTTCACTGTTGTCTCTCTCCGGCGACTCCGGTCTCCCTCAGATCACTAAAGTTGAGAGGAAGATCGCGACGATGATGAAGGTGCATGGCGAGGCAAGGCAAGGTAGCCCAGGTAATCACTATCCTAATTGCTGTTTCGATTGTTTTTCTGGAATTGTGAATTTTGTTGTCATGGAAAAACTGGAGCGCGTTGGCCGACTGAAATTGAATCTCCGGTGCAGGGCGTCGTTTCGCGACTGTATCTCTGCAGCAACAGCTCCGACGCGTCTCTTGCCTCCACCGCCGCCGTCCCCGCTTAACCTTTCACAACGATTTTCAGCTCTGAAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.0

Weight (kDa)

9.69

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 233, 354, 399, 430
AciI CCGC 4 cut(s) 6, 446, 449, 458
AclWI GGATC 2 cut(s) 151, 155
AcoI YGGCCR 2 cut(s) 44, 358
AcsI RAATTY 1 cut(s) 325
AcyI GRCGYC 1 cut(s) 389
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 3 cut(s) 98, 118, 385
AflIII ACRYGT 1 cut(s) 428
AgsI TTSAA 1 cut(s) 373
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 2 cut(s) 422, 485
AluI AGCT 2 cut(s) 422, 485
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 3 cut(s) 183, 203, 437
Alw44I GTGCAC 1 cut(s) 52
AlwI GGATC 2 cut(s) 151, 155
AoxI GGCC 2 cut(s) 44, 358
ApaLI GTGCAC 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 413
ApoI RAATTY 1 cut(s) 325
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 53
AvaII GGWCC 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 425
BccI CCATC 1 cut(s) 40
BceAI ACGGC 3 cut(s) 31, 62, 436
BciT130I CCWGG 1 cut(s) 276
BcoDI GTCTC 3 cut(s) 183, 203, 437
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 411
BisI GCNGC 2 cut(s) 414, 449
BlsI GCNGC 2 cut(s) 415, 450
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 276
BoxI GACNNNNGTC 1 cut(s) 195
BpmI CTGGAG 2 cut(s) 120, 368
BpuEI CTTGAG 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 389
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 41, 274
BsaWI WCCGGW 2 cut(s) 194, 378
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 118, 385
Bse1I ACTGG 3 cut(s) 72, 103, 351
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 2 cut(s) 41, 274
BseLI CCNNNNNNNGG 3 cut(s) 98, 118, 385
BseMII CTCAG 2 cut(s) 50, 218
BseNI ACTGG 3 cut(s) 72, 103, 351
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 1 cut(s) 425
BsgI GTGCAG 1 cut(s) 403
Bsh1236I CGCG 4 cut(s) 233, 354, 399, 430
BshFI GGCC 2 cut(s) 46, 360
BsiHKAI GWGCWC 1 cut(s) 56
BsiSI CCGG 3 cut(s) 186, 195, 379
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 3 cut(s) 98, 118, 385
BsmAI GTCTC 3 cut(s) 183, 203, 437
BsmBI CGTCTC 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 2 cut(s) 46, 360
Bso31I GGTCTC 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 56, 106
Bsp143I GATC 4 cut(s) 147, 156, 207, 228
Bsp19I CCATGG 1 cut(s) 41
Bsp68I TCGCGA 2 cut(s) 233, 399
BspACI CCGC 4 cut(s) 6, 446, 449, 458
BspANI GGCC 2 cut(s) 46, 360
BspCNI CTCAG 2 cut(s) 49, 217
BspFNI CGCG 4 cut(s) 233, 354, 399, 430
BspLI GGNNCC 1 cut(s) 103
BspMAI CTGCAG 1 cut(s) 415
BspPI GGATC 2 cut(s) 151, 155
BspTNI GGTCTC 1 cut(s) 203
BsrI ACTGG 3 cut(s) 72, 103, 351
BssECI CCNNGG 2 cut(s) 41, 274
BssMI GATC 4 cut(s) 147, 156, 207, 228
BssNI GRCGYC 1 cut(s) 389
BssT1I CCWWGG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 2 cut(s) 174, 404
BstACI GRCGYC 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 36, 204
BstDSI CCRYGG 1 cut(s) 41
BstFNI CGCG 4 cut(s) 233, 354, 399, 430
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 4 cut(s) 150, 159, 210, 231
BstMAI GTCTC 3 cut(s) 183, 203, 437
BstMBI GATC 4 cut(s) 147, 156, 207, 228
BstMWI GCNNNNNNNGC 4 cut(s) 419, 436, 445, 457
BstNI CCWGG 1 cut(s) 276
BstPAI GACNNNNGTC 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 274
BstSFI CTRYAG 1 cut(s) 411
BstSLI GKGCMC 1 cut(s) 56
BstUI CGCG 4 cut(s) 233, 354, 399, 430
BstV1I GCAGC 1 cut(s) 425
BstX2I RGATCY 2 cut(s) 147, 156
BstYI RGATCY 2 cut(s) 147, 156
BsuRI GGCC 2 cut(s) 46, 360
BtgI CCRYGG 1 cut(s) 41
BtsIMutI CAGTG 3 cut(s) 65, 170, 493
BtuMI TCGCGA 2 cut(s) 233, 399
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 70
CseI GACGC 3 cut(s) 378, 419, 436
Csp6I GTAC 1 cut(s) 89
CviAII CATG 3 cut(s) 42, 251, 337
CviJI RGCY 9 cut(s) 40, 46, 77, 104, 110, 273, 360, 422, 485
CviKI_1 RGCY 9 cut(s) 40, 46, 77, 104, 110, 273, 360, 422, 485
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 2 cut(s) 36, 204
DpnI GATC 4 cut(s) 149, 158, 209, 230
DpnII GATC 4 cut(s) 147, 156, 207, 228
EaeI YGGCCR 2 cut(s) 44, 358
Eco130I CCWWGG 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 106
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 41
EcoT38I GRGCYC 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 41
Esp3I CGTCTC 1 cut(s) 437
FaeI CATG 3 cut(s) 45, 254, 340
FaiI YATR 4 cut(s) 43, 137, 252, 338
FaqI GGGAC 1 cut(s) 439
FatI CATG 3 cut(s) 41, 250, 336
FauI CCCGC 2 cut(s) 13, 465
Fnu4HI GCNGC 2 cut(s) 414, 449
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 2 cut(s) 414, 449
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 353
GluI GCNGC 2 cut(s) 414, 449
GsuI CTGGAG 2 cut(s) 120, 368
HaeIII GGCC 2 cut(s) 46, 360
HapII CCGG 3 cut(s) 186, 195, 379
HgaI GACGC 3 cut(s) 378, 419, 436
HhaI GCGC 1 cut(s) 354
Hin1I GRCGYC 1 cut(s) 389
Hin1II CATG 3 cut(s) 45, 254, 340
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HinfI GANTC 4 cut(s) 58, 122, 191, 373
HpaII CCGG 3 cut(s) 186, 195, 379
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 3 cut(s) 207, 426, 489
Hpy188III TCNNGA 3 cut(s) 232, 315, 398
Hpy8I GTNNAC 1 cut(s) 54
Hpy99I CGWCG 3 cut(s) 238, 394, 430
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 2 cut(s) 174, 404
HpyCH4V TGCA 4 cut(s) 54, 250, 384, 413
HpyF10VI GCNNNNNNNGC 4 cut(s) 419, 436, 445, 457
HpyF3I CTNAG 2 cut(s) 36, 204
Hsp92I GRCGYC 1 cut(s) 389
Hsp92II CATG 3 cut(s) 45, 254, 340
HspAI GCGC 1 cut(s) 352
Kzo9I GATC 4 cut(s) 147, 156, 207, 228
LmnI GCTCC 3 cut(s) 101, 349, 427
Lsp1109I GCAGC 1 cut(s) 425
MaeI CTAG 1 cut(s) 107
MalI GATC 4 cut(s) 149, 158, 209, 230
MboI GATC 4 cut(s) 147, 156, 207, 228
MboII GAAGA 1 cut(s) 238
MfeI CAATTG 1 cut(s) 142
MflI RGATCY 2 cut(s) 147, 156
MhlI GDGCHC 2 cut(s) 56, 106
MluCI AATT 6 cut(s) 19, 142, 292, 318, 325, 368
MluI ACGCGT 1 cut(s) 428
MlyI GAGTC 2 cut(s) 116, 185
MmeI TCCRAC 2 cut(s) 36, 449
MnlI CCTC 7 cut(s) 19, 39, 93, 213, 216, 250, 450
MseI TTAA 1 cut(s) 462
MspI CCGG 3 cut(s) 186, 195, 379
MspR9I CCNGG 1 cut(s) 276
MunI CAATTG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 276
MvnI CGCG 4 cut(s) 233, 354, 399, 430
MwoI GCNNNNNNNGC 4 cut(s) 419, 436, 445, 457
NcoI CCATGG 1 cut(s) 41
NdeII GATC 4 cut(s) 147, 156, 207, 228
NlaIII CATG 3 cut(s) 45, 254, 340
NlaIV GGNNCC 1 cut(s) 103
NruI TCGCGA 2 cut(s) 233, 399
PfeI GAWTC 2 cut(s) 58, 373
PkrI GCNGC 2 cut(s) 415, 450
PleI GAGTC 2 cut(s) 116, 185
PpsI GAGTC 2 cut(s) 116, 185
PshAI GACNNNNGTC 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 70
PstI CTGCAG 1 cut(s) 415
PsuI RGATCY 2 cut(s) 147, 156
RruI TCGCGA 2 cut(s) 233, 399
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 2 cut(s) 414, 449
Sau3AI GATC 4 cut(s) 147, 156, 207, 228
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 2 cut(s) 116, 185
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 2 cut(s) 56, 106
SetI ASST 7 cut(s) 94, 249, 271, 280, 424, 468, 487
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 6 cut(s) 19, 142, 292, 318, 325, 368
SsiI CCGC 4 cut(s) 6, 446, 449, 458
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 274
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 2 cut(s) 174, 404
TaqI TCGA 2 cut(s) 164, 303
TasI AATT 6 cut(s) 19, 142, 292, 318, 325, 368
TauI GCSGC 1 cut(s) 451
TfiI GAWTC 2 cut(s) 58, 373
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 2 cut(s) 72, 177
TseI GCWGC 1 cut(s) 413
TspDTI ATGAA 1 cut(s) 257
TspRI CASTG 2 cut(s) 72, 177
VneI GTGCAC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 39
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.