Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0002975

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAAATCTCTGTTCCGAGAGCTCCTCCTCTCGGGGGTCCTGCCACCACACCGGATCTCCGCCTCCTCATCCAACGCCTCGACGCCCACTCCCTCAAAATCATGTTCAAAATCCAATCCCACCTCCTCTCTCACCGCCACGAAGGAGGCGAGGGAGAAGCGGGAGCGGCTGGAGCTGGTGAGGGCAGTTCTGGAAATAAGCGAAAAATTAAAGGCTGCTAGAGAGGCGGTGAGGAATGGACGGCTGAGATTTGCGGCTGAGCTAGTGAGGGAGCTGAAGAAGGCTCTTAGGGTTTCCGATCAGGTTGCTGAGAGTGAGCCTGTTGAGGAAGGAGTGATTCAAGAGGTGCTGATGAGGTTCATGGACAATGCGGTGCGTTTCGAACGCGAATCTAATAGAATTCGAGTCAAGTATGTACTGAGCATTGATGGGAACCATGGGATTGAGCTCAAGACAGTGTTACAAGCTTTGGATATGGTTGGCATTTTACACTATGGACTTGCTAAAGTAGCTGACTTGATGATCAAGCATGTCATCTCTCCAGCTCTGAATTCTGGATCGCCTGTGTCCTTTGTAACAGAAATAAATCCAGACTCACAAGCAATGACTGAGGCGACACTGAAGATTGTACCATCAAATGATCCTAAGGGTTCTTGGACTCGATGCTTTGGAAGATTGACATGGCCAAGAATATCGAAGTTGATTATTTCTAAGTTTCTTTCCAAGGTTATTCTTTGTAATCCTTCCCCACTTTTCGTTTTGTATATGGTCTTTCTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006810 GO:0006888 GO:0007049 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016192 GO:0022402 GO:0030071 GO:0031577 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048193 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990423 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zw10

Protein Analysis

260

Amino Acids

29.0

Weight (kDa)

9.73

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zw10_middle	PF20665	116 - 205	8.2e-12	Centromere/kinetochore protein zw10, middle domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32900
fragaria_vesca	FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900
malus_domestica	MD09G1116200.v1.1 MD17G1107900.v1.1
prunus_persica	Prupe.3G208500_v2.0.a1
pyrus_communis	pycom09g04060 pycom17g10050
rosa_chinensis	RchiOBHm_Chr0c20g0500271 RchiOBHm_Chr1g0340131 RchiOBHm_Chr1g0340141 RchiOBHm_Chr2g0157781
rosa_laevigata	RLG00000021018 RLG00000028993
rosa_multiflora	Rmu_co8468091.1_g000001 Rmu_sc0001275.1_g000033 Rmu_sc0010800.1_g000004 Rmu_sc0018661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091960 Rroxscaffold_4G00311000
rosa_rugosa	Rorug02G0463300 Rorug02G0463300
rosa_samantha	Rh1AG180900 Rh1CG167700 Rh1DG181000 Rh1DG181100 Rh2AG528800 Rh2BG542700 Rh2CG513100 Rh2DG551700
rosa_wichuraiana	Rw1G015020 Rw2G043720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	166
AccII	CGCG	1 cut(s)	387
AciI	CCGC	7 cut(s)	60, 135, 160, 166, 227, 254, 371
AclWI	GGATC	3 cut(s)	62, 565, 635
AcoI	YGGCCR	1 cut(s)	683
AcsI	RAATTY	2 cut(s)	399, 550
AcuI	CTGAAG	2 cut(s)	296, 641
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	2 cut(s)	417, 630
AfiI	CCNNNNNNNGG	2 cut(s)	31, 34
AgsI	TTSAA	2 cut(s)	108, 341
AluBI	AGCT	8 cut(s)	22, 175, 262, 274, 448, 467, 512, 545
AluI	AGCT	8 cut(s)	22, 175, 262, 274, 448, 467, 512, 545
Alw21I	GWGCWC	2 cut(s)	24, 450
AlwI	GGATC	3 cut(s)	62, 565, 635
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	1 cut(s)	683
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	2 cut(s)	399, 550
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	3 cut(s)	124, 190, 241
AsuII	TTCGAA	1 cut(s)	381
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	37
AxyI	CCTNAGG	1 cut(s)	645
BalI	TGGCCA	1 cut(s)	685
BanII	GRGCYC	2 cut(s)	24, 450
Bbv12I	GWGCWC	2 cut(s)	24, 450
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	2 cut(s)	422, 640
BceAI	ACGGC	1 cut(s)	257
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BclI	TGATCA	1 cut(s)	522
BfaI	CTAG	2 cut(s)	219, 263
BisI	GCNGC	3 cut(s)	167, 216, 255
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	3 cut(s)	168, 217, 256
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	38, 434
BmsI	GCATC	1 cut(s)	653
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
BpmI	CTGGAG	2 cut(s)	191, 525
Bpu1102I	GCTNAGC	1 cut(s)	258
Bpu14I	TTCGAA	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	436, 723
BsaWI	WCCGGW	1 cut(s)	51
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 71, 73, 103
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 34
Bse21I	CCTNAGG	1 cut(s)	645
Bse3DI	GCAATG	1 cut(s)	609
BseDI	CCNNGG	2 cut(s)	436, 723
BseGI	GGATG	1 cut(s)	68
BseLI	CCNNNNNNNGG	2 cut(s)	31, 34
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	5 cut(s)	236, 249, 300, 410, 600
BseRI	GAGGAG	4 cut(s)	14, 17, 55, 115
BseXI	GCAGC	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	685
BsiHKAI	GWGCWC	2 cut(s)	24, 450
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	31, 34
BsnI	GGCC	1 cut(s)	685
BsoBI	CYCGRG	1 cut(s)	31
Bsp119I	TTCGAA	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	24, 450
Bsp143I	GATC	5 cut(s)	54, 298, 522, 557, 640
Bsp1720I	GCTNAGC	1 cut(s)	258
Bsp19I	CCATGG	1 cut(s)	436
BspACI	CCGC	7 cut(s)	60, 135, 160, 166, 227, 254, 371
BspANI	GGCC	1 cut(s)	685
BspCNI	CTCAG	5 cut(s)	237, 250, 301, 411, 601
BspFNI	CGCG	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	38, 434
BspPI	GGATC	3 cut(s)	62, 565, 635
BspT104I	TTCGAA	1 cut(s)	381
BsrBI	CCGCTC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	609
BssECI	CCNNGG	2 cut(s)	436, 723
BssMI	GATC	5 cut(s)	54, 298, 522, 557, 640
BssNI	GRCGYC	1 cut(s)	83
BssT1I	CCWWGG	2 cut(s)	436, 723
Bst4CI	ACNGT	1 cut(s)	457
BstACI	GRCGYC	1 cut(s)	83
BstBI	TTCGAA	1 cut(s)	381
BstDEI	CTNAG	8 cut(s)	245, 258, 287, 309, 419, 609, 645, 711
BstDSI	CCRYGG	1 cut(s)	436
BstF5I	GGATG	1 cut(s)	68
BstFNI	CGCG	1 cut(s)	387
BstKTI	GATC	5 cut(s)	57, 301, 525, 560, 643
BstMBI	GATC	5 cut(s)	54, 298, 522, 557, 640
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 172, 224, 509
BstNSI	RCATGY	1 cut(s)	533
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
Bsu36I	CCTNAGG	1 cut(s)	645
BsuRI	GGCC	1 cut(s)	685
BtgI	CCRYGG	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	462, 617
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	416, 629
CviAII	CATG	5 cut(s)	102, 361, 437, 530, 681
CviQI	GTAC	2 cut(s)	416, 629
DdeI	CTNAG	8 cut(s)	245, 258, 287, 309, 419, 609, 645, 711
DpnI	GATC	5 cut(s)	56, 300, 524, 559, 642
DpnII	GATC	5 cut(s)	54, 298, 522, 557, 640
EaeI	YGGCCR	1 cut(s)	683
EciI	GGCGGA	1 cut(s)	49
Ecl136II	GAGCTC	2 cut(s)	22, 448
Eco130I	CCWWGG	2 cut(s)	436, 723
Eco24I	GRGCYC	2 cut(s)	24, 450
Eco47I	GGWCC	1 cut(s)	37
Eco53kI	GAGCTC	2 cut(s)	22, 448
Eco57I	CTGAAG	2 cut(s)	296, 641
Eco81I	CCTNAGG	1 cut(s)	645
Eco88I	CYCGRG	1 cut(s)	31
EcoICRI	GAGCTC	2 cut(s)	22, 448
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRI	GAATTC	2 cut(s)	399, 550
EcoT14I	CCWWGG	2 cut(s)	436, 723
EcoT38I	GRGCYC	2 cut(s)	24, 450
ErhI	CCWWGG	2 cut(s)	436, 723
FaeI	CATG	5 cut(s)	105, 364, 440, 533, 684
FatI	CATG	5 cut(s)	101, 360, 436, 529, 680
FauI	CCCGC	1 cut(s)	153
FbaI	TGATCA	1 cut(s)	522
Fnu4HI	GCNGC	3 cut(s)	167, 216, 255
FokI	GGATG	1 cut(s)	55
FriOI	GRGCYC	2 cut(s)	24, 450
Fsp4HI	GCNGC	3 cut(s)	167, 216, 255
FspBI	CTAG	2 cut(s)	219, 263
GluI	GCNGC	3 cut(s)	167, 216, 255
GsuI	CTGGAG	2 cut(s)	191, 525
HaeIII	GGCC	1 cut(s)	685
HapII	CCGG	1 cut(s)	52
HgaI	GACGC	1 cut(s)	91
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	5 cut(s)	105, 364, 440, 533, 684
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	5 cut(s)	337, 389, 405, 593, 658
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	3 cut(s)	124, 190, 241
Hpy188I	TCNGA	3 cut(s)	17, 298, 549
Hpy188III	TCNNGA	5 cut(s)	191, 341, 451, 555, 590
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	4 cut(s)	136, 274, 323, 753
HpyCH4III	ACNGT	1 cut(s)	457
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 172, 224, 509
HpyF3I	CTNAG	8 cut(s)	245, 258, 287, 309, 419, 609, 645, 711
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	5 cut(s)	105, 364, 440, 533, 684
Ksp22I	TGATCA	1 cut(s)	522
Kzo9I	GATC	5 cut(s)	54, 298, 522, 557, 640
LmnI	GCTCC	4 cut(s)	27, 163, 172, 271
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	1 cut(s)	653
MaeI	CTAG	2 cut(s)	219, 263
MaeIII	GTNAC	2 cut(s)	459, 574
MalI	GATC	5 cut(s)	56, 300, 524, 559, 642
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	5 cut(s)	54, 298, 522, 557, 640
MboII	GAAGA	3 cut(s)	289, 634, 684
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	2 cut(s)	24, 450
MlsI	TGGCCA	1 cut(s)	685
MluCI	AATT	3 cut(s)	206, 399, 550
MluNI	TGGCCA	1 cut(s)	685
MlyI	GAGTC	3 cut(s)	414, 587, 652
MmeI	TCCRAC	1 cut(s)	96
Mox20I	TGGCCA	1 cut(s)	685
MscI	TGGCCA	1 cut(s)	685
MseI	TTAA	1 cut(s)	209
Msp20I	TGGCCA	1 cut(s)	685
MspI	CCGG	1 cut(s)	52
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	4 cut(s)	166, 172, 224, 509
NcoI	CCATGG	1 cut(s)	436
NdeII	GATC	5 cut(s)	54, 298, 522, 557, 640
NlaIII	CATG	5 cut(s)	105, 364, 440, 533, 684
NlaIV	GGNNCC	2 cut(s)	38, 434
NspI	RCATGY	1 cut(s)	533
NspV	TTCGAA	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	337, 389
PkrI	GCNGC	3 cut(s)	168, 217, 256
PleI	GAGTC	3 cut(s)	413, 587, 652
PpsI	GAGTC	3 cut(s)	413, 587, 652
PpuMI	RGGWCCY	1 cut(s)	37
Psp124BI	GAGCTC	2 cut(s)	24, 450
Psp5II	RGGWCCY	1 cut(s)	37
PspN4I	GGNNCC	2 cut(s)	38, 434
PspPI	GGNCC	1 cut(s)	37
PspPPI	RGGWCCY	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	54
RsaI	GTAC	2 cut(s)	417, 630
RsaNI	GTAC	2 cut(s)	416, 629
SacI	GAGCTC	2 cut(s)	24, 450
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	3 cut(s)	167, 216, 255
Sau3AI	GATC	5 cut(s)	54, 298, 522, 557, 640
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	3 cut(s)	414, 587, 652
SduI	GDGCHC	2 cut(s)	24, 450
SfaNI	GCATC	1 cut(s)	653
SfuI	TTCGAA	1 cut(s)	381
SinI	GGWCC	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	3 cut(s)	206, 399, 550
SsiI	CCGC	7 cut(s)	60, 135, 160, 166, 227, 254, 371
SspMI	CTAG	2 cut(s)	219, 263
SstI	GAGCTC	2 cut(s)	24, 450
StyI	CCWWGG	2 cut(s)	436, 723
TaaI	ACNGT	1 cut(s)	457
TaqI	TCGA	5 cut(s)	80, 381, 403, 661, 695
TasI	AATT	3 cut(s)	206, 399, 550
TatI	WGTACW	1 cut(s)	415
TauI	GCSGC	2 cut(s)	169, 257
TfiI	GAWTC	2 cut(s)	337, 389
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TscAI	CASTG	2 cut(s)	462, 624
TseI	GCWGC	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	17, 349
TspRI	CASTG	2 cut(s)	462, 624
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	2 cut(s)	399, 550
XceI	RCATGY	1 cut(s)	533
XspI	CTAG	2 cut(s)	219, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.