RCHIOBHM_CHR0C31G0501341

No description available

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0006421
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGGTGACAGATTGGAGAGTCAATTGCATGATCGATTACATCTCTGAGATGAACTGCTCTTTGATCCGCTGTCACACTGCAATAAACAAGCTTGCTCAGGAAGTCAATAACTTGCAGAGTTATCCTCCTGGGTTTCCTCGCAAGGACGCTACTGCATCACAACATGAGGACCCGCCTCCGAAGGCTGAAACCAGCAAGAGGGCTGCCACTCGCCCGCATACCGCTCCTCCAAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.91

Weight (kDa)

7.76

Isoelectric Point (pI)

57.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 224
AciI CCGC 4 cut(s) 67, 173, 215, 222
AclWI GGATC 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 198
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
AlwI GGATC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 129
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 164
BplI GAGNNNNNCTC 2 cut(s) 109, 141
Bpu10I CCTNAGC 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 128
BsaXI ACNNNNNCTCC 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 129
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 36, 110
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 190
BshVI ATCGAT 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 198
Bsp143I GATC 2 cut(s) 30, 63
BspACI CCGC 4 cut(s) 67, 173, 215, 222
BspCNI CTCAG 2 cut(s) 37, 109
BspDI ATCGAT 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 171
BspPI GGATC 1 cut(s) 58
BsrBI CCGCTC 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 128
BssMI GATC 2 cut(s) 30, 63
Bst2UI CCWGG 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 93, 215
BstDEI CTNAG 2 cut(s) 45, 96
BstKTI GATC 2 cut(s) 33, 66
BstMBI GATC 2 cut(s) 30, 63
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 190
Bsu15I ATCGAT 1 cut(s) 33
BsuTUI ATCGAT 1 cut(s) 33
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 2 cut(s) 93, 215
Cfr13I GGNCC 1 cut(s) 169
ClaI ATCGAT 1 cut(s) 33
CseI GACGC 1 cut(s) 155
CviAII CATG 2 cut(s) 28, 164
CviJI RGCY 3 cut(s) 91, 185, 203
CviKI_1 RGCY 3 cut(s) 91, 185, 203
DdeI CTNAG 2 cut(s) 45, 96
DpnI GATC 2 cut(s) 32, 65
DpnII GATC 2 cut(s) 30, 63
Eco47I GGWCC 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 127
FaeI CATG 2 cut(s) 31, 167
FaiI YATR 3 cut(s) 29, 165, 219
FatI CATG 2 cut(s) 27, 163
FauI CCCGC 2 cut(s) 180, 222
Fnu4HI GCNGC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 204
HgaI GACGC 1 cut(s) 155
Hin1II CATG 2 cut(s) 31, 167
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 1 cut(s) 18
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 46, 180
Hpy188III TCNNGA 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 175
HpyCH4V TGCA 4 cut(s) 27, 80, 115, 155
HpyF3I CTNAG 2 cut(s) 45, 96
Hsp92II CATG 2 cut(s) 31, 167
Kzo9I GATC 2 cut(s) 30, 63
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 4 cut(s) 83, 114, 141, 205
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 164
MaeIII GTNAC 2 cut(s) 4, 71
MalI GATC 2 cut(s) 32, 65
MbiI CCGCTC 1 cut(s) 224
MboI GATC 2 cut(s) 30, 63
MfeI CAATTG 1 cut(s) 22
MluCI AATT 1 cut(s) 22
MlyI GAGTC 1 cut(s) 27
MnlI CCTC 6 cut(s) 135, 147, 160, 186, 192, 237
MspA1I CMGCKG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 129
MunI CAATTG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 129
NdeII GATC 2 cut(s) 30, 63
NlaIII CATG 2 cut(s) 31, 167
NlaIV GGNNCC 1 cut(s) 171
NmuCI GTSAC 2 cut(s) 4, 71
PkrI GCNGC 1 cut(s) 205
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 169
Psp5II RGGWCCY 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 169
PspPPI RGGWCCY 1 cut(s) 169
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 30, 63
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 27
ScrFI CCNGG 1 cut(s) 129
SetI ASST 1 cut(s) 93
SfaNI GCATC 1 cut(s) 164
SinI GGWCC 1 cut(s) 169
Sse9I AATT 1 cut(s) 22
SsiI CCGC 4 cut(s) 67, 173, 215, 222
StyD4I CCNGG 1 cut(s) 127
TaqI TCGA 1 cut(s) 33
TasI AATT 1 cut(s) 22
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 2 cut(s) 4, 71
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 2 cut(s) 4, 71
TspDTI ATGAA 1 cut(s) 65
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.