RchiOBHm_Chr1g0371961

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006421
Physical Location & Seq
Forward (+)
60879373 .. 60880077
705 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59600

Sequence Viewer

Length: 531 bp
ATGGCTCGAACCAAGGTTACCCCTCGCAGGGGCGTCAATCAACGCCGTGTTCTCTCTTTGGAAGAAGAAGGTCGTCAAGCGGCCACTAGAGCTGGACTTACTCGTCCATGGGACCATCGTCCTATCCGTGAGCGTACCCGCAGTCCCCCTCCTCTGCCTCGTCGCTCTCCCAGACTGCATCCCGGAGAGTCTTCTTCCTCACCAGCTGCTCGTGCTCCTCGGCCTGTGGCCACCCTGGAAAGCTTGTCGGATTCTATTGATGATTTGCGCTCCTCTCTCCGCGATGGTATTATGGTGACAGATTGGAGAGTCAATTGCATGATCGATTACATCTCTGAGATGAACTGCTCTTTGATCCGCTGTCACACTGCAATAAACAAGCTTGCTCAGGAAGTCAATAACTTGCAGAGTTATCCTCCTGGGTTTCCTCGCAAGGACGCTACTGCATCACACCATGAGGACCCTCCTCAGGAAGCTGAAACCAGCAAGAGGGCTGCCACTCGCCCGCATACCGCTCCTCCAAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.78

Weight (kDa)

10.1

Isoelectric Point (pI)

76.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 102
AccBSI CCGCTC 1 cut(s) 515
AccII CGCG 1 cut(s) 282
AciI CCGC 6 cut(s) 80, 139, 280, 358, 506, 513
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 2 cut(s) 81, 228
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 5 cut(s) 27, 28, 29, 469, 489
AjnI CCWGG 2 cut(s) 234, 418
AluBI AGCT 5 cut(s) 92, 206, 243, 382, 476
AluI AGCT 5 cut(s) 92, 206, 243, 382, 476
Alw21I GWGCWC 1 cut(s) 217
AlwI GGATC 1 cut(s) 349
AoxI GGCC 3 cut(s) 81, 221, 228
ApeKI GCWGC 2 cut(s) 206, 494
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 2 cut(s) 112, 460
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 192, 307
AvaII GGWCC 2 cut(s) 112, 460
AxyI CCTNAGG 1 cut(s) 468
BalI TGGCCA 1 cut(s) 230
BauI CACGAG 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 2 cut(s) 193, 481
BccI CCATC 2 cut(s) 123, 278
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 2 cut(s) 236, 420
BcnI CCSGG 1 cut(s) 183
BfaI CTAG 1 cut(s) 87
BisI GCNGC 3 cut(s) 81, 207, 495
BlsI GCNGC 3 cut(s) 82, 208, 496
Bme1390I CCNGG 3 cut(s) 183, 236, 420
Bme18I GGWCC 2 cut(s) 112, 460
BmgT120I GGNCC 2 cut(s) 112, 460
BmiI GGNNCC 2 cut(s) 113, 462
BmrFI CCNGG 3 cut(s) 183, 236, 420
BmsI GCATC 2 cut(s) 187, 455
BoxI GACNNNNGTC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 183
BplI GAGNNNNNCTC 2 cut(s) 400, 432
Bpu10I CCTNAGC 1 cut(s) 387
BpuMI CCSGG 1 cut(s) 183
Bsa29I ATCGAT 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 5 cut(s) 12, 107, 218, 234, 419
BsaXI ACNNNNNCTCC 1 cut(s) 502
Bsc4I CCNNNNNNNGG 5 cut(s) 27, 28, 29, 469, 489
Bse21I CCTNAGG 1 cut(s) 468
BseBI CCWGG 2 cut(s) 236, 420
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 5 cut(s) 12, 107, 218, 234, 419
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 5 cut(s) 27, 28, 29, 469, 489
BseMII CTCAG 3 cut(s) 327, 401, 482
BseRI GAGGAG 5 cut(s) 141, 207, 262, 456, 507
BseXI GCAGC 2 cut(s) 193, 481
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 3 cut(s) 83, 223, 230
BshVI ATCGAT 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 183
BslFI GGGAC 2 cut(s) 125, 129
BslI CCNNNNNNNGG 5 cut(s) 27, 28, 29, 469, 489
BsmFI GGGAC 2 cut(s) 125, 129
BsnI GGCC 3 cut(s) 83, 223, 230
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 321, 354
Bsp19I CCATGG 1 cut(s) 107
BspACI CCGC 6 cut(s) 80, 139, 280, 358, 506, 513
BspANI GGCC 3 cut(s) 83, 223, 230
BspCNI CTCAG 3 cut(s) 328, 400, 481
BspDI ATCGAT 1 cut(s) 324
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 113, 462
BspPI GGATC 1 cut(s) 349
BsrBI CCGCTC 1 cut(s) 515
BssECI CCNNGG 5 cut(s) 12, 107, 218, 234, 419
BssMI GATC 2 cut(s) 321, 354
BssNI GRCGYC 1 cut(s) 33
BssSI CACGAG 1 cut(s) 210
BssT1I CCWWGG 2 cut(s) 12, 107
Bst2BI CACGAG 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 236, 420
BstACI GRCGYC 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 384, 506
BstDEI CTNAG 3 cut(s) 336, 387, 468
BstDSI CCRYGG 1 cut(s) 107
BstEII GGTNACC 1 cut(s) 16
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 2 cut(s) 324, 357
BstMBI GATC 2 cut(s) 321, 354
BstMWI GCNNNNNNNGC 2 cut(s) 89, 212
BstNI CCWGG 2 cut(s) 236, 420
BstPAI GACNNNNGTC 1 cut(s) 117
BstPI GGTNACC 1 cut(s) 16
BstSCI CCNGG 3 cut(s) 181, 234, 418
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 193, 481
BstV2I GAAGAC 1 cut(s) 183
Bsu15I ATCGAT 1 cut(s) 324
Bsu36I CCTNAGG 1 cut(s) 468
BsuRI GGCC 3 cut(s) 83, 223, 230
BsuTUI ATCGAT 1 cut(s) 324
BtgI CCRYGG 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 1 cut(s) 366
Cac8I GCNNGC 2 cut(s) 384, 506
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 2 cut(s) 112, 460
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 2 cut(s) 22, 446
Csp6I GTAC 1 cut(s) 135
CviAII CATG 3 cut(s) 108, 319, 455
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 3 cut(s) 336, 387, 468
DpnI GATC 2 cut(s) 323, 356
DpnII GATC 2 cut(s) 321, 354
DrdI GACNNNNNNGTC 1 cut(s) 102
DseDI GACNNNNNNGTC 1 cut(s) 102
EaeI YGGCCR 2 cut(s) 81, 228
Eco130I CCWWGG 2 cut(s) 12, 107
Eco47I GGWCC 2 cut(s) 112, 460
Eco81I CCTNAGG 1 cut(s) 468
Eco91I GGTNACC 1 cut(s) 16
EcoO109I RGGNCCY 1 cut(s) 460
EcoO65I GGTNACC 1 cut(s) 16
EcoRII CCWGG 2 cut(s) 234, 418
EcoT14I CCWWGG 2 cut(s) 12, 107
ErhI CCWWGG 2 cut(s) 12, 107
FaeI CATG 3 cut(s) 111, 322, 458
FaiI YATR 5 cut(s) 109, 293, 320, 456, 510
FaqI GGGAC 2 cut(s) 125, 129
FatI CATG 3 cut(s) 107, 318, 454
FauI CCCGC 2 cut(s) 146, 513
Fnu4HI GCNGC 3 cut(s) 81, 207, 495
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 3 cut(s) 81, 207, 495
FspBI CTAG 1 cut(s) 87
GlaI GCGC 1 cut(s) 269
GluI GCNGC 3 cut(s) 81, 207, 495
HaeIII GGCC 3 cut(s) 83, 223, 230
HapII CCGG 1 cut(s) 183
HgaI GACGC 2 cut(s) 22, 446
HhaI GCGC 1 cut(s) 270
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 3 cut(s) 111, 322, 458
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HindIII AAGCTT 2 cut(s) 241, 380
HinfI GANTC 3 cut(s) 188, 251, 309
HpaII CCGG 1 cut(s) 183
HphI GGTGA 2 cut(s) 192, 307
Hpy188I TCNGA 2 cut(s) 250, 337
Hpy188III TCNNGA 2 cut(s) 389, 470
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 1 cut(s) 62
HpyCH4V TGCA 5 cut(s) 178, 318, 371, 406, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 212
HpyF3I CTNAG 3 cut(s) 336, 387, 468
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 3 cut(s) 111, 322, 458
HspAI GCGC 1 cut(s) 268
Kzo9I GATC 2 cut(s) 321, 354
LmnI GCTCC 3 cut(s) 220, 275, 520
Lsp1109I GCAGC 2 cut(s) 193, 481
LweI GCATC 2 cut(s) 187, 455
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 3 cut(s) 16, 295, 362
MalI GATC 2 cut(s) 323, 356
MbiI CCGCTC 1 cut(s) 515
MboI GATC 2 cut(s) 321, 354
MboII GAAGA 4 cut(s) 74, 77, 183, 186
MfeI CAATTG 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 1 cut(s) 313
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 2 cut(s) 197, 318
MmeI TCCRAC 1 cut(s) 228
Mox20I TGGCCA 1 cut(s) 230
MscI TGGCCA 1 cut(s) 230
Msp20I TGGCCA 1 cut(s) 230
MspA1I CMGCKG 2 cut(s) 206, 360
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 3 cut(s) 183, 236, 420
MunI CAATTG 1 cut(s) 313
MvaI CCWGG 2 cut(s) 236, 420
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 89, 212
NciI CCSGG 1 cut(s) 183
NcoI CCATGG 1 cut(s) 107
NdeII GATC 2 cut(s) 321, 354
NlaIII CATG 3 cut(s) 111, 322, 458
NlaIV GGNNCC 2 cut(s) 113, 462
NmeAIII GCCGAG 1 cut(s) 199
NmuCI GTSAC 2 cut(s) 295, 362
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PfeI GAWTC 1 cut(s) 251
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 3 cut(s) 82, 208, 496
PleI GAGTC 2 cut(s) 196, 317
PpsI GAGTC 2 cut(s) 196, 317
PpuMI RGGWCCY 1 cut(s) 460
PshAI GACNNNNGTC 1 cut(s) 117
Psp5II RGGWCCY 1 cut(s) 460
Psp6I CCWGG 2 cut(s) 234, 418
PspEI GGTNACC 1 cut(s) 16
PspGI CCWGG 2 cut(s) 234, 418
PspN4I GGNNCC 2 cut(s) 113, 462
PspPI GGNCC 2 cut(s) 112, 460
PspPPI RGGWCCY 1 cut(s) 460
PsrI GAACNNNNNNTAC 1 cut(s) 33
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SatI GCNGC 3 cut(s) 81, 207, 495
Sau3AI GATC 2 cut(s) 321, 354
Sau96I GGNCC 2 cut(s) 112, 460
SchI GAGTC 2 cut(s) 197, 318
ScrFI CCNGG 3 cut(s) 183, 236, 420
SduI GDGCHC 1 cut(s) 217
SetI ASST 7 cut(s) 18, 73, 94, 208, 245, 384, 478
SfaNI GCATC 2 cut(s) 187, 455
SinI GGWCC 2 cut(s) 112, 460
Sse9I AATT 1 cut(s) 313
SsiI CCGC 6 cut(s) 80, 139, 280, 358, 506, 513
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 3 cut(s) 181, 234, 418
StyI CCWWGG 2 cut(s) 12, 107
TaqI TCGA 2 cut(s) 7, 324
TasI AATT 1 cut(s) 313
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 1 cut(s) 251
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 2 cut(s) 295, 362
TseI GCWGC 2 cut(s) 206, 494
Tsp45I GTSAC 2 cut(s) 295, 362
TspDTI ATGAA 1 cut(s) 356
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 1 cut(s) 373
VpaK11BI GGWCC 2 cut(s) 112, 460
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.