Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006421

Physical Location & Seq

Genomic Coordinates Reverse (-)

51392458 .. 51412294

Gene Structure 19837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00321780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCTACTAAAGGCTGCAGATAAGTTGCCTATGAATGGGAGGGTATTCCATTTGGCCGTTGGAAGGTCAAGTCTCTTTGCTTCTTCTTTGGACGAGGGTTTGTCTAAGTGTGTAGTTTCAAATTCCTTCTCCTTCCTCATGGTTCGAACCAAGGTTACCACTCGCACGGGCATCAATCAACGTCGTGTTCTCTCTTTGGAGGAAGAAGGTCGTCAAGCGGCCGCCCGCGTTGGCCTCACTCATCCCGGGGACCGTCGTCCCACACGTGAGTGTAACCGCAGTCCCCCTCCTCTCGCCTCGTCGCTCTCCCCGAATGCATCCCGGCGAGTCCTCTTCCTCCTCGGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04726 map04726

Pfam Domains

Protein Families

p450

Protein Analysis

116

Amino Acids

12.67

Weight (kDa)

11.27

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006421)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c31g0501341 RchiOBHm_Chr1g0371701 RchiOBHm_Chr1g0371961 RchiOBHm_Chr2g0121361 RchiOBHm_Chr2g0123371 RchiOBHm_Chr2g0125601 RchiOBHm_Chr2g0125911 RchiOBHm_Chr2g0126281 RchiOBHm_Chr2g0126661 RchiOBHm_Chr2g0133861 RchiOBHm_Chr2g0147521 RchiOBHm_Chr2g0148851 RchiOBHm_Chr2g0156331 RchiOBHm_Chr2g0158501 RchiOBHm_Chr2g0159001 RchiOBHm_Chr3g0464581
rosa_multiflora	Rmu_sc0001192.1_g000013 Rmu_sc0006388.1_g000025 Rmu_sc0010640.1_g000009
rosa_roxburghii	Rroxscaffold_4G00292500 Rroxscaffold_4G00321780
rosa_samantha	Rh7DG327200
rosa_wichuraiana	Rw1G025310 Rw3G020540 Rw5G033820 Rw7G028260 Rw7G028560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	228
AciI	CCGC	4 cut(s)	218, 222, 226, 277
AcoI	YGGCCR	2 cut(s)	54, 219
AcsI	RAATTY	1 cut(s)	121
AcvI	CACGTG	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	35, 63
AflIII	ACRYGT	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	120
AleI	CACNNNNGTG	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	3 cut(s)	54, 219, 232
ApeKI	GCWGC	2 cut(s)	14, 345
ApoI	RAATTY	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	250
AsuC2I	CCSGG	3 cut(s)	246, 247, 322
AsuII	TTCGAA	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	250
BbrPI	CACGTG	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	41
BcnI	CCSGG	3 cut(s)	246, 247, 322
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	349
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	4 cut(s)	15, 219, 222, 346
BlsI	GCNGC	4 cut(s)	16, 220, 223, 347
Bme1390I	CCNGG	3 cut(s)	246, 247, 322
Bme18I	GGWCC	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	251
BmrFI	CCNGG	3 cut(s)	246, 247, 322
BmsI	GCATC	2 cut(s)	180, 326
BoxI	GACNNNNGTC	1 cut(s)	255
Bpu14I	TTCGAA	1 cut(s)	145
BpuMI	CCSGG	3 cut(s)	246, 247, 322
BsaAI	YACGTR	1 cut(s)	266
BsaJI	CCNNGG	4 cut(s)	150, 245, 246, 340
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 63
BseDI	CCNNGG	4 cut(s)	150, 245, 246, 340
BseGI	GGATG	2 cut(s)	241, 317
BseLI	CCNNNNNNNGG	2 cut(s)	35, 63
BseRI	GAGGAG	2 cut(s)	279, 329
BseX3I	CGGCCG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	56, 221, 234
BsiEI	CGRYCG	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	246, 322
BslFI	GGGAC	3 cut(s)	243, 263, 267
BslI	CCNNNNNNNGG	2 cut(s)	35, 63
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	3 cut(s)	243, 263, 267
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	3 cut(s)	56, 221, 234
BsoBI	CYCGRG	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	145
BspACI	CCGC	4 cut(s)	218, 222, 226, 277
BspANI	GGCC	3 cut(s)	56, 221, 234
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	251
BspMAI	CTGCAG	1 cut(s)	19
BspT104I	TTCGAA	1 cut(s)	145
BssECI	CCNNGG	4 cut(s)	150, 245, 246, 340
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	338
BstBAI	YACGTR	1 cut(s)	266
BstBI	TTCGAA	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	105
BstEII	GGTNACC	1 cut(s)	154
BstF5I	GGATG	2 cut(s)	241, 317
BstFNI	CGCG	1 cut(s)	228
BstMAI	GTCTC	1 cut(s)	77
BstMCI	CGRYCG	1 cut(s)	222
BstPAI	GACNNNNGTC	1 cut(s)	255
BstPI	GGTNACC	1 cut(s)	154
BstSCI	CCNGG	3 cut(s)	244, 245, 320
BstSFI	CTRYAG	1 cut(s)	15
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	332
BstZI	CGGCCG	1 cut(s)	219
BsuRI	GGCC	3 cut(s)	56, 221, 234
BtsCI	GGATG	2 cut(s)	241, 317
Cac8I	GCNNGC	1 cut(s)	226
CciNI	GCGGCCGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	250
Cfr9I	CCCGGG	1 cut(s)	245
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	5 cut(s)	14, 56, 221, 234, 345
CviKI_1	RGCY	5 cut(s)	14, 56, 221, 234, 345
DdeI	CTNAG	1 cut(s)	105
EaeI	YGGCCR	2 cut(s)	54, 219
EagI	CGGCCG	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
EclXI	CGGCCG	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	250
Eco52I	CGGCCG	1 cut(s)	219
Eco72I	CACGTG	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	245
Eco91I	GGTNACC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	142
FaiI	YATR	2 cut(s)	32, 140
FaqI	GGGAC	3 cut(s)	243, 263, 267
FatI	CATG	1 cut(s)	138
FauI	CCCGC	1 cut(s)	233
Fnu4HI	GCNGC	4 cut(s)	15, 219, 222, 346
FokI	GGATG	2 cut(s)	228, 304
Fsp4HI	GCNGC	4 cut(s)	15, 219, 222, 346
FspBI	CTAG	1 cut(s)	349
GluI	GCNGC	4 cut(s)	15, 219, 222, 346
HaeIII	GGCC	3 cut(s)	56, 221, 234
HapII	CCGG	2 cut(s)	246, 322
Hin1II	CATG	1 cut(s)	142
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	2 cut(s)	246, 322
Hpy99I	CGWCG	3 cut(s)	186, 258, 304
HpyAV	CCTTC	4 cut(s)	57, 136, 142, 200
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	2 cut(s)	181, 265
HpyCH4V	TGCA	2 cut(s)	17, 317
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	2 cut(s)	181, 265
Hsp92II	CATG	1 cut(s)	142
LpnPI	CCDG	2 cut(s)	259, 335
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	2 cut(s)	180, 326
MaeI	CTAG	1 cut(s)	349
MaeII	ACGT	2 cut(s)	181, 265
MaeIII	GTNAC	2 cut(s)	154, 272
MboII	GAAGA	3 cut(s)	75, 215, 325
MluCI	AATT	1 cut(s)	121
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	40
Mph1103I	ATGCAT	1 cut(s)	319
MslI	CAYNNNNRTG	1 cut(s)	268
MspI	CCGG	2 cut(s)	246, 322
MspR9I	CCNGG	3 cut(s)	246, 247, 322
Mva1269I	GAATGC	1 cut(s)	319
MvnI	CGCG	1 cut(s)	228
NciI	CCSGG	3 cut(s)	246, 247, 322
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	1 cut(s)	251
NmeAIII	GCCGAG	1 cut(s)	321
NotI	GCGGCCGC	1 cut(s)	219
NsiI	ATGCAT	1 cut(s)	319
NspV	TTCGAA	1 cut(s)	145
OliI	CACNNNNGTG	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	2 cut(s)	262, 308
PctI	GAATGC	1 cut(s)	319
PkrI	GCNGC	4 cut(s)	16, 220, 223, 347
PleI	GAGTC	1 cut(s)	335
PmaCI	CACGTG	1 cut(s)	266
PmlI	CACGTG	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	335
Ppu21I	YACGTR	1 cut(s)	266
PshAI	GACNNNNGTC	1 cut(s)	255
PspCI	CACGTG	1 cut(s)	266
PspEI	GGTNACC	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	250
PsrI	GAACNNNNNNTAC	2 cut(s)	139, 171
PstI	CTGCAG	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	268
SatI	GCNGC	4 cut(s)	15, 219, 222, 346
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	3 cut(s)	246, 247, 322
SetI	ASST	5 cut(s)	68, 156, 184, 211, 268
SfaNI	GCATC	2 cut(s)	180, 326
SfcI	CTRYAG	1 cut(s)	15
SfuI	TTCGAA	1 cut(s)	145
SinI	GGWCC	1 cut(s)	250
SmaI	CCCGGG	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	268
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	4 cut(s)	218, 222, 226, 277
SspMI	CTAG	1 cut(s)	349
StyD4I	CCNGG	3 cut(s)	244, 245, 320
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	2 cut(s)	184, 268
TaqI	TCGA	1 cut(s)	145
TasI	AATT	1 cut(s)	121
TauI	GCSGC	2 cut(s)	221, 224
TseI	GCWGC	2 cut(s)	14, 345
TspDTI	ATGAA	1 cut(s)	47
TspMI	CCCGGG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	56
XmaI	CCCGGG	1 cut(s)	245
XspI	CTAG	1 cut(s)	349
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.