Rmu_sc0001192.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001192.1
OG0006421
Physical Location & Seq
Forward (+)
43248 .. 43553
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001192.1_g000013.1.cds

Sequence Viewer

Length: 306 bp
atgaacttctccttgattcgctgtcacactgcgatgaacatgcttgctttggaagtccagaacatgcagagtcatcctcctgggtttccccgcaaggacgctactacgtcactccatgaggaccctcgtccagaggctgaaacaagcaagagggctgccactcgcccgtgcaccgcttctcatgttccttgggaagctctcgacgcaaccagtggtgccttgcaggatagtgaagaggtctatgatcggatcaccaaactcaaggaggagattgctgagctttcccattcaaagggggagaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.27

Weight (kDa)

5.68

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 215
AciI CCGC 2 cut(s) 91, 174
AclWI GGATC 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 1 cut(s) 291
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 2 cut(s) 197, 280
AluI AGCT 2 cut(s) 197, 280
Alw21I GWGCWC 1 cut(s) 173
Alw44I GTGCAC 1 cut(s) 169
AlwI GGATC 1 cut(s) 257
AlwNI CAGNNNCTG 1 cut(s) 137
ApaLI GTGCAC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 244
AvaII GGWCC 1 cut(s) 121
BaeGI GKGCMC 1 cut(s) 173
BanI GGYRCC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 142
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciT130I CCWGG 1 cut(s) 81
BisI GCNGC 1 cut(s) 156
BlpI GCTNAGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 123, 217
BmrFI CCNGG 1 cut(s) 81
BoxI GACNNNNGTC 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 61, 93
Bpu1102I GCTNAGC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 80, 188
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 210
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 2 cut(s) 80, 188
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 281
BseSI GKGCMC 1 cut(s) 173
BseXI GCAGC 1 cut(s) 142
BshNI GGYRCC 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 2 cut(s) 244, 249
Bsp1720I GCTNAGC 1 cut(s) 276
BspACI CCGC 2 cut(s) 91, 174
BspCNI CTCAG 1 cut(s) 268
BspLI GGNNCC 2 cut(s) 123, 217
BspPI GGATC 1 cut(s) 257
BspT107I GGYRCC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 2 cut(s) 80, 188
BssMI GATC 2 cut(s) 244, 249
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 2 cut(s) 247, 252
BstMBI GATC 2 cut(s) 244, 249
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 2 cut(s) 43, 67
BstPAI GACNNNNGTC 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 79
BstSLI GKGCMC 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 142
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 2 cut(s) 27, 217
Cac8I GCNNGC 1 cut(s) 45
CaiI CAGNNNCTG 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 121
CseI GACGC 2 cut(s) 107, 212
CviAII CATG 4 cut(s) 40, 64, 116, 182
CviJI RGCY 4 cut(s) 137, 155, 197, 280
CviKI_1 RGCY 4 cut(s) 137, 155, 197, 280
DdeI CTNAG 1 cut(s) 276
DpnI GATC 2 cut(s) 246, 251
DpnII GATC 2 cut(s) 244, 249
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 121
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 4 cut(s) 43, 67, 119, 185
FaiI YATR 5 cut(s) 41, 65, 117, 183, 243
FatI CATG 4 cut(s) 39, 63, 115, 181
FauI CCCGC 1 cut(s) 98
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 156
HgaI GACGC 2 cut(s) 107, 212
Hin1II CATG 4 cut(s) 43, 67, 119, 185
HinfI GANTC 2 cut(s) 16, 70
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 171
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 3 cut(s) 58, 131, 200
Hpy8I GTNNAC 1 cut(s) 171
Hpy99I CGWCG 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 3 cut(s) 67, 171, 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 276
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 4 cut(s) 43, 67, 119, 185
Kzo9I GATC 2 cut(s) 244, 249
LpnPI CCDG 6 cut(s) 66, 71, 93, 144, 209, 223
Lsp1109I GCAGC 1 cut(s) 142
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 2 cut(s) 23, 108
MalI GATC 2 cut(s) 246, 251
MboI GATC 2 cut(s) 244, 249
MboII GAAGA 1 cut(s) 245
MhlI GDGCHC 1 cut(s) 173
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 7 cut(s) 87, 112, 127, 135, 144, 229, 259
MslI CAYNNNNRTG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 2 cut(s) 244, 249
NlaIII CATG 4 cut(s) 43, 67, 119, 185
NlaIV GGNNCC 2 cut(s) 123, 217
NmuCI GTSAC 2 cut(s) 23, 108
NspI RCATGY 2 cut(s) 43, 67
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
PpuMI RGGWCCY 1 cut(s) 121
PshAI GACNNNNGTC 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 123, 217
PspPI GGNCC 1 cut(s) 121
PspPPI RGGWCCY 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 32
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 2 cut(s) 244, 249
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 1 cut(s) 173
SetI ASST 4 cut(s) 110, 199, 240, 282
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SsiI CCGC 2 cut(s) 91, 174
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 1 cut(s) 188
TaiI ACGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 201
TfiI GAWTC 1 cut(s) 16
TscAI CASTG 2 cut(s) 34, 217
TseFI GTSAC 2 cut(s) 23, 108
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 2 cut(s) 23, 108
TspDTI ATGAA 2 cut(s) 17, 50
TspRI CASTG 2 cut(s) 34, 217
VneI GTGCAC 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 121
XceI RCATGY 2 cut(s) 43, 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.