RchiOBHm_Chr1g0371701

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006421
Physical Location & Seq
Forward (+)
60777560 .. 60777866
307 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59576

Sequence Viewer

Length: 306 bp
ATGGCCACCCTGGAAAGCTTGTCGGATTCGATTGATGATTTGCGTTCCTCTCTCCGCGATGGTATTATGGTGACAGATTGGAGAGTCAATTGCATGATCGATTACATCTCTGAGATGAACTGCTCTTTGATCCGCTGTCACACTGCAATAAACAAGCTTGCTCAGGAAGTCAATAACTTGCAGAGTTATCCTCCTGGGTTTCCTCGCAAGGACGCTACTGCATCACAACATGAGGACCCGCCTCCGAAGGCTGAAACCAGCAAGAGGGCTGCCACTCGCCCGCATACCGCTCCTCCAAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.28

Weight (kDa)

5.88

Isoelectric Point (pI)

61.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 290
AccII CGCG 1 cut(s) 57
AciI CCGC 5 cut(s) 55, 133, 239, 281, 288
AclWI GGATC 1 cut(s) 124
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 264
AjnI CCWGG 2 cut(s) 9, 193
AluBI AGCT 2 cut(s) 18, 157
AluI AGCT 2 cut(s) 18, 157
AlwI GGATC 1 cut(s) 124
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 1 cut(s) 235
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 53
BciT130I CCWGG 2 cut(s) 11, 195
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 2 cut(s) 11, 195
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 2 cut(s) 11, 195
BmsI GCATC 1 cut(s) 230
BplI GAGNNNNNCTC 2 cut(s) 175, 207
Bpu10I CCTNAGC 1 cut(s) 162
Bsa29I ATCGAT 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 9, 194
BsaXI ACNNNNNCTCC 1 cut(s) 277
Bsc4I CCNNNNNNNGG 1 cut(s) 264
BseBI CCWGG 2 cut(s) 11, 195
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 9, 194
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMII CTCAG 2 cut(s) 102, 176
BseRI GAGGAG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 256
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 264
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 96, 129
BspACI CCGC 5 cut(s) 55, 133, 239, 281, 288
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 103, 175
BspDI ATCGAT 1 cut(s) 99
BspFNI CGCG 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 1 cut(s) 124
BsrBI CCGCTC 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 9, 194
BssMI GATC 2 cut(s) 96, 129
Bst2UI CCWGG 2 cut(s) 11, 195
BstC8I GCNNGC 2 cut(s) 159, 281
BstDEI CTNAG 2 cut(s) 111, 162
BstFNI CGCG 1 cut(s) 57
BstKTI GATC 2 cut(s) 99, 132
BstMBI GATC 2 cut(s) 96, 129
BstNI CCWGG 2 cut(s) 11, 195
BstSCI CCNGG 2 cut(s) 9, 193
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 256
Bsu15I ATCGAT 1 cut(s) 99
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 99
BtgZI GCGATG 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 159, 281
Cfr13I GGNCC 1 cut(s) 235
ClaI ATCGAT 1 cut(s) 99
CseI GACGC 1 cut(s) 221
CviAII CATG 2 cut(s) 94, 230
CviJI RGCY 5 cut(s) 5, 18, 157, 251, 269
CviKI_1 RGCY 5 cut(s) 5, 18, 157, 251, 269
DdeI CTNAG 2 cut(s) 111, 162
DpnI GATC 2 cut(s) 98, 131
DpnII GATC 2 cut(s) 96, 129
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 2 cut(s) 9, 193
FaeI CATG 2 cut(s) 97, 233
FaiI YATR 4 cut(s) 68, 95, 231, 285
FatI CATG 2 cut(s) 93, 229
FauI CCCGC 2 cut(s) 246, 288
Fnu4HI GCNGC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 270
GluI GCNGC 1 cut(s) 270
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 221
Hin1II CATG 2 cut(s) 97, 233
HindIII AAGCTT 2 cut(s) 16, 155
HinfI GANTC 2 cut(s) 26, 84
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 25, 112, 246
Hpy188III TCNNGA 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 241
HpyCH4V TGCA 4 cut(s) 93, 146, 181, 221
HpyF3I CTNAG 2 cut(s) 111, 162
Hsp92II CATG 2 cut(s) 97, 233
Kzo9I GATC 2 cut(s) 96, 129
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 5 cut(s) 23, 149, 180, 207, 271
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 1 cut(s) 230
MaeIII GTNAC 2 cut(s) 70, 137
MalI GATC 2 cut(s) 98, 131
MbiI CCGCTC 1 cut(s) 290
MboI GATC 2 cut(s) 96, 129
MfeI CAATTG 1 cut(s) 88
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 88
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 93
MnlI CCTC 7 cut(s) 58, 201, 213, 226, 252, 258, 303
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 135
MspR9I CCNGG 2 cut(s) 11, 195
MunI CAATTG 1 cut(s) 88
MvaI CCWGG 2 cut(s) 11, 195
MvnI CGCG 1 cut(s) 57
NdeII GATC 2 cut(s) 96, 129
NlaIII CATG 2 cut(s) 97, 233
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 2 cut(s) 70, 137
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PpuMI RGGWCCY 1 cut(s) 235
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 2 cut(s) 9, 193
PspGI CCWGG 2 cut(s) 9, 193
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 235
PspPPI RGGWCCY 1 cut(s) 235
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 2 cut(s) 96, 129
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 2 cut(s) 11, 195
SetI ASST 2 cut(s) 20, 159
SfaNI GCATC 1 cut(s) 230
SinI GGWCC 1 cut(s) 235
Sse9I AATT 1 cut(s) 88
SsiI CCGC 5 cut(s) 55, 133, 239, 281, 288
StyD4I CCNGG 2 cut(s) 9, 193
TaqI TCGA 2 cut(s) 29, 99
TasI AATT 1 cut(s) 88
TfiI GAWTC 1 cut(s) 26
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 2 cut(s) 70, 137
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 2 cut(s) 70, 137
TspDTI ATGAA 1 cut(s) 131
TspRI CASTG 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.