Rw5G033820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0006421
Physical Location & Seq
Reverse (-)
57666473 .. 57666778
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G033820.1

Sequence Viewer

Length: 306 bp
ATGGCCACCCTGGAAAGCTTGTCGGATTCGATTGATGATTTGCGTTCCTCTCTCTGTGATGGTATTATGGTGACAGATTGGAGAGTCAATTGCATGATCGATTACATCTCTGAGATGAACTGCTCTTTGATCCGCTGTCACACTGCAATAAACAAGCTTGCTCAGGAAGTCAATAACTTGCAGAGTTATCCTCCTGGGTTTCCTCGCAAGGACACTACTGCATCACACCATGAGAACTCTCCTCCGGAGGCTGAAACCAGCAAGAAGGGTGCCACTCGCCCGCACACCGTTCCTCCAAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.24

Weight (kDa)

5.48

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 269
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 2 cut(s) 133, 281
AclWI GGATC 1 cut(s) 124
AcoI YGGCCR 1 cut(s) 3
AjnI CCWGG 2 cut(s) 9, 193
AluBI AGCT 2 cut(s) 18, 157
AluI AGCT 2 cut(s) 18, 157
AlwI GGATC 1 cut(s) 124
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 1 cut(s) 3
AsuHPI GGTGA 1 cut(s) 82
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 269
BccI CCATC 1 cut(s) 53
BciT130I CCWGG 2 cut(s) 11, 195
Bme1390I CCNGG 2 cut(s) 11, 195
BmiI GGNNCC 1 cut(s) 271
BmrFI CCNGG 2 cut(s) 11, 195
BmsI GCATC 1 cut(s) 230
BplI GAGNNNNNCTC 2 cut(s) 175, 207
Bpu10I CCTNAGC 1 cut(s) 162
Bsa29I ATCGAT 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 9, 194
BsaWI WCCGGW 1 cut(s) 244
BsaXI ACNNNNNCTCC 1 cut(s) 277
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 2 cut(s) 11, 195
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 9, 194
BseMII CTCAG 2 cut(s) 102, 176
BseRI GAGGAG 1 cut(s) 231
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 269
BshVI ATCGAT 1 cut(s) 99
BsiSI CCGG 1 cut(s) 245
BsnI GGCC 1 cut(s) 5
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 2 cut(s) 96, 129
BspACI CCGC 2 cut(s) 133, 281
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 103, 175
BspDI ATCGAT 1 cut(s) 99
BspEI TCCGGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 271
BspPI GGATC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 9, 194
BssMI GATC 2 cut(s) 96, 129
Bst2UI CCWGG 2 cut(s) 11, 195
Bst4CI ACNGT 1 cut(s) 289
BstC8I GCNNGC 2 cut(s) 159, 281
BstDEI CTNAG 2 cut(s) 111, 162
BstKTI GATC 2 cut(s) 99, 132
BstMBI GATC 2 cut(s) 96, 129
BstNI CCWGG 2 cut(s) 11, 195
BstSCI CCNGG 2 cut(s) 9, 193
Bsu15I ATCGAT 1 cut(s) 99
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 159, 281
ClaI ATCGAT 1 cut(s) 99
CviAII CATG 2 cut(s) 94, 230
CviJI RGCY 4 cut(s) 5, 18, 157, 251
CviKI_1 RGCY 4 cut(s) 5, 18, 157, 251
DdeI CTNAG 2 cut(s) 111, 162
DpnI GATC 2 cut(s) 98, 131
DpnII GATC 2 cut(s) 96, 129
EaeI YGGCCR 1 cut(s) 3
EcoRII CCWGG 2 cut(s) 9, 193
FaeI CATG 2 cut(s) 97, 233
FaiI YATR 3 cut(s) 68, 95, 231
FatI CATG 2 cut(s) 93, 229
FauI CCCGC 1 cut(s) 288
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 245
Hin1II CATG 2 cut(s) 97, 233
HindIII AAGCTT 2 cut(s) 16, 155
HinfI GANTC 2 cut(s) 26, 84
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 2 cut(s) 25, 112
Hpy188III TCNNGA 2 cut(s) 164, 245
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 4 cut(s) 93, 146, 181, 221
HpyF3I CTNAG 2 cut(s) 111, 162
Hsp92II CATG 2 cut(s) 97, 233
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 2 cut(s) 96, 129
LpnPI CCDG 6 cut(s) 23, 149, 180, 207, 258, 271
LweI GCATC 1 cut(s) 230
MaeIII GTNAC 2 cut(s) 70, 137
MalI GATC 2 cut(s) 98, 131
MboI GATC 2 cut(s) 96, 129
MfeI CAATTG 1 cut(s) 88
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 88
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 93
MnlI CCTC 6 cut(s) 58, 201, 213, 241, 252, 303
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 244
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 135
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 2 cut(s) 11, 195
MunI CAATTG 1 cut(s) 88
MvaI CCWGG 2 cut(s) 11, 195
NdeII GATC 2 cut(s) 96, 129
NlaIII CATG 2 cut(s) 97, 233
NlaIV GGNNCC 1 cut(s) 271
NmuCI GTSAC 2 cut(s) 70, 137
PfeI GAWTC 1 cut(s) 26
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 9, 193
PspGI CCWGG 2 cut(s) 9, 193
PspN4I GGNNCC 1 cut(s) 271
Sau3AI GATC 2 cut(s) 96, 129
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 2 cut(s) 11, 195
SetI ASST 2 cut(s) 20, 159
SfaNI GCATC 1 cut(s) 230
Sse9I AATT 1 cut(s) 88
SsiI CCGC 2 cut(s) 133, 281
StyD4I CCNGG 2 cut(s) 9, 193
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 2 cut(s) 29, 99
TasI AATT 1 cut(s) 88
TfiI GAWTC 1 cut(s) 26
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 2 cut(s) 70, 137
Tsp45I GTSAC 2 cut(s) 70, 137
TspDTI ATGAA 1 cut(s) 131
TspRI CASTG 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.