RchiOBHm_Chr3g0464581

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006421
Physical Location & Seq
Forward (+)
11668739 .. 11669857
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43084

Sequence Viewer

Length: 645 bp
ATGATTCGAACCAAGTTTACCGCTCGCATGGGCGTCAATCAACGTCGTGTTCTCTCTTTAGAAGAAGAGGGTCGTCAAGCGGCTGCTAGCGCTGGCCTCACTCGTCCTTGGGACCATCGTCCCATTCGTGAGCGTAGCCGCAGTCCCCCTTCTCTGCCTCGTCGTTCTCCCAGACTGCATCCCAGCGAGTCCTCTTCATCCCGAACTGCTCGTGCTCCTCGGCCTGTGGCCACCCTGGAAAGCTTGTCAGACTCAATTGATGCACTGCGTTCCTCTCTCCGTGATGGTATTATGGTGACGGATTGGCGAGTCACATGTATGATCGATTACATCTCTGACATGAACCTCTCTTTGATCCGCTGTCACACCGCAATGAACAAGCTTGCTCAGGAGGTCAATAACATGCAGTGTCATCCTCCTGGGTTCCCTTGCAAGGAAGTTGCTGCGTCACTCCACAAGAACCCTCCTCCTGAGGCTGAAACCAGCAAAAGGGCTGCCACTCGCCCGCGCACCGCTCCTCATGTTCCTTGGGAAGATCTTGACTCAACCAGTAGTGACTCGCAGGACAGTGAAGAGGTCGATGATCAAGTCACCAAACTCATGAAGGAGATCGCTGAGCCTTCCCATTCGAAGGGGAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.94

Weight (kDa)

9.2

Isoelectric Point (pI)

70.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 23, 515
AccII CGCG 1 cut(s) 508
AciI CCGC 7 cut(s) 21, 80, 139, 358, 369, 506, 513
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 33
AfeI AGCGCT 1 cut(s) 91
AfiI CCNNNNNNNGG 3 cut(s) 433, 489, 631
AflIII ACRYGT 1 cut(s) 314
AjnI CCWGG 2 cut(s) 234, 418
AluBI AGCT 2 cut(s) 243, 382
AluI AGCT 2 cut(s) 243, 382
Alw21I GWGCWC 1 cut(s) 217
AlwI GGATC 1 cut(s) 349
Aor51HI AGCGCT 1 cut(s) 91
AoxI GGCC 3 cut(s) 94, 221, 228
ApeKI GCWGC 3 cut(s) 83, 443, 494
AspLEI GCGC 2 cut(s) 92, 510
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 2 cut(s) 307, 583
AsuII TTCGAA 2 cut(s) 7, 629
AsuNHI GCTAGC 1 cut(s) 86
AvaII GGWCC 1 cut(s) 112
AxyI CCTNAGG 1 cut(s) 471
BalI TGGCCA 1 cut(s) 230
BauI CACGAG 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 3 cut(s) 70, 430, 481
BccI CCATC 2 cut(s) 123, 278
BciT130I CCWGG 2 cut(s) 236, 420
BclI TGATCA 1 cut(s) 583
BfaI CTAG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 93
BglII AGATCT 1 cut(s) 535
BisI GCNGC 5 cut(s) 81, 84, 139, 444, 495
BlpI GCTNAGC 1 cut(s) 615
BlsI GCNGC 5 cut(s) 82, 85, 140, 445, 496
Bme1390I CCNGG 2 cut(s) 236, 420
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 2 cut(s) 113, 425
BmrFI CCNGG 2 cut(s) 236, 420
BmsI GCATC 2 cut(s) 187, 250
BmtI GCTAGC 1 cut(s) 90
BoxI GACNNNNGTC 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 387
Bpu1102I GCTNAGC 1 cut(s) 615
Bpu14I TTCGAA 2 cut(s) 7, 629
Bsa29I ATCGAT 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 5 cut(s) 107, 218, 234, 419, 527
Bsc4I CCNNNNNNNGG 3 cut(s) 433, 489, 631
Bse1I ACTGG 1 cut(s) 549
Bse21I CCTNAGG 1 cut(s) 471
Bse3DI GCAATG 1 cut(s) 378
BseBI CCWGG 2 cut(s) 236, 420
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 5 cut(s) 107, 218, 234, 419, 527
BseGI GGATG 3 cut(s) 178, 197, 412
BseLI CCNNNNNNNGG 3 cut(s) 433, 489, 631
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 3 cut(s) 401, 462, 606
BseNI ACTGG 1 cut(s) 549
BseRI GAGGAG 3 cut(s) 207, 456, 507
BseXI GCAGC 3 cut(s) 70, 430, 481
BseYI CCCAGC 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 508
BshFI GGCC 3 cut(s) 96, 223, 230
BshVI ATCGAT 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 217
BslFI GGGAC 3 cut(s) 105, 125, 129
BslI CCNNNNNNNGG 3 cut(s) 433, 489, 631
BsmFI GGGAC 3 cut(s) 105, 125, 129
BsnI GGCC 3 cut(s) 96, 223, 230
Bsp119I TTCGAA 2 cut(s) 7, 629
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 5 cut(s) 321, 354, 535, 583, 609
Bsp1720I GCTNAGC 1 cut(s) 615
BspACI CCGC 7 cut(s) 21, 80, 139, 358, 369, 506, 513
BspANI GGCC 3 cut(s) 96, 223, 230
BspCNI CTCAG 3 cut(s) 400, 463, 607
BspDI ATCGAT 1 cut(s) 324
BspFNI CGCG 1 cut(s) 508
BspHI TCATGA 1 cut(s) 600
BspLI GGNNCC 2 cut(s) 113, 425
BspOI GCTAGC 1 cut(s) 90
BspPI GGATC 1 cut(s) 349
BspT104I TTCGAA 2 cut(s) 7, 629
BsrBI CCGCTC 2 cut(s) 23, 515
BsrDI GCAATG 1 cut(s) 378
BsrI ACTGG 1 cut(s) 549
BssECI CCNNGG 5 cut(s) 107, 218, 234, 419, 527
BssMI GATC 5 cut(s) 321, 354, 535, 583, 609
BssNI GRCGYC 1 cut(s) 33
BssSI CACGAG 1 cut(s) 210
BssT1I CCWWGG 2 cut(s) 107, 527
Bst2BI CACGAG 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 236, 420
Bst4CI ACNGT 1 cut(s) 569
Bst6I CTCTTC 3 cut(s) 60, 199, 567
BstACI GRCGYC 1 cut(s) 33
BstBI TTCGAA 2 cut(s) 7, 629
BstC8I GCNNGC 5 cut(s) 25, 88, 94, 384, 506
BstDEI CTNAG 3 cut(s) 387, 471, 615
BstF5I GGATG 3 cut(s) 178, 197, 412
BstFNI CGCG 1 cut(s) 508
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 2 cut(s) 92, 510
BstKTI GATC 5 cut(s) 324, 357, 538, 586, 612
BstMBI GATC 5 cut(s) 321, 354, 535, 583, 609
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 2 cut(s) 236, 420
BstNSI RCATGY 2 cut(s) 318, 406
BstPAI GACNNNNGTC 1 cut(s) 117
BstSCI CCNGG 2 cut(s) 234, 418
BstUI CGCG 1 cut(s) 508
BstV1I GCAGC 3 cut(s) 70, 430, 481
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
Bsu15I ATCGAT 1 cut(s) 324
Bsu36I CCTNAGG 1 cut(s) 471
BsuRI GGCC 3 cut(s) 96, 223, 230
BsuTUI ATCGAT 1 cut(s) 324
BtsCI GGATG 3 cut(s) 178, 197, 412
BtsI GCAGTG 2 cut(s) 263, 413
BtsIMutI CAGTG 3 cut(s) 263, 413, 574
Cac8I GCNNGC 5 cut(s) 25, 88, 94, 384, 506
CciI TCATGA 1 cut(s) 600
CfoI GCGC 2 cut(s) 92, 510
Cfr13I GGNCC 1 cut(s) 112
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 2 cut(s) 22, 435
CviAII CATG 6 cut(s) 28, 315, 340, 403, 521, 601
DdeI CTNAG 3 cut(s) 387, 471, 615
DpnI GATC 5 cut(s) 323, 356, 537, 585, 611
DpnII GATC 5 cut(s) 321, 354, 535, 583, 609
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 3 cut(s) 60, 199, 567
EarI CTCTTC 3 cut(s) 60, 199, 567
Eco130I CCWWGG 2 cut(s) 107, 527
Eco47I GGWCC 1 cut(s) 112
Eco47III AGCGCT 1 cut(s) 91
Eco81I CCTNAGG 1 cut(s) 471
EcoRII CCWGG 2 cut(s) 234, 418
EcoT14I CCWWGG 2 cut(s) 107, 527
ErhI CCWWGG 2 cut(s) 107, 527
FaeI CATG 6 cut(s) 31, 318, 343, 406, 524, 604
FaiI YATR 8 cut(s) 29, 293, 316, 320, 341, 404, 522, 602
FaqI GGGAC 3 cut(s) 105, 125, 129
FatI CATG 6 cut(s) 27, 314, 339, 402, 520, 600
FauI CCCGC 1 cut(s) 513
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 5 cut(s) 81, 84, 139, 444, 495
FokI GGATG 3 cut(s) 165, 184, 399
Fsp4HI GCNGC 5 cut(s) 81, 84, 139, 444, 495
FspBI CTAG 1 cut(s) 87
GlaI GCGC 2 cut(s) 91, 509
GluI GCNGC 5 cut(s) 81, 84, 139, 444, 495
GsaI CCCAGC 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 3 cut(s) 96, 223, 230
HgaI GACGC 2 cut(s) 22, 435
HhaI GCGC 2 cut(s) 92, 510
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 6 cut(s) 31, 318, 343, 406, 524, 604
Hin6I GCGC 2 cut(s) 90, 508
HinP1I GCGC 2 cut(s) 90, 508
HindIII AAGCTT 2 cut(s) 241, 380
HinfI GANTC 6 cut(s) 4, 188, 251, 309, 542, 557
HphI GGTGA 2 cut(s) 307, 583
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 2 cut(s) 250, 337
Hpy188III TCNNGA 6 cut(s) 128, 201, 389, 470, 539, 601
Hpy8I GTNNAC 1 cut(s) 18
Hpy99I CGWCG 2 cut(s) 48, 165
HpyAV CCTTC 4 cut(s) 159, 598, 625, 630
HpyCH4III ACNGT 1 cut(s) 569
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 4 cut(s) 178, 263, 406, 432
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 3 cut(s) 387, 471, 615
HpySE526I ACGT 1 cut(s) 43
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 6 cut(s) 31, 318, 343, 406, 524, 604
HspAI GCGC 2 cut(s) 90, 508
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 5 cut(s) 321, 354, 535, 583, 609
LmnI GCTCC 2 cut(s) 220, 520
Lsp1109I GCAGC 3 cut(s) 70, 430, 481
LweI GCATC 2 cut(s) 187, 250
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 6 cut(s) 295, 310, 362, 447, 554, 589
MalI GATC 5 cut(s) 323, 356, 537, 585, 611
MbiI CCGCTC 2 cut(s) 23, 515
MboI GATC 5 cut(s) 321, 354, 535, 583, 609
MboII GAAGA 5 cut(s) 74, 77, 186, 545, 584
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 230
MluCI AATT 1 cut(s) 255
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 5 cut(s) 197, 245, 318, 536, 551
Mox20I TGGCCA 1 cut(s) 230
MscI TGGCCA 1 cut(s) 230
MslI CAYNNNNRTG 2 cut(s) 317, 371
Msp20I TGGCCA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 360
MspR9I CCNGG 2 cut(s) 236, 420
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 2 cut(s) 236, 420
MvnI CGCG 1 cut(s) 508
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 5 cut(s) 321, 354, 535, 583, 609
NheI GCTAGC 1 cut(s) 86
NlaIII CATG 6 cut(s) 31, 318, 343, 406, 524, 604
NlaIV GGNNCC 2 cut(s) 113, 425
NmeAIII GCCGAG 1 cut(s) 199
NmuCI GTSAC 6 cut(s) 295, 310, 362, 447, 554, 589
NspI RCATGY 2 cut(s) 318, 406
NspV TTCGAA 2 cut(s) 7, 629
PagI TCATGA 1 cut(s) 600
PciI ACATGT 1 cut(s) 314
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 5 cut(s) 82, 85, 140, 445, 496
PleI GAGTC 5 cut(s) 196, 245, 317, 536, 551
PpsI GAGTC 5 cut(s) 196, 245, 317, 536, 551
PscI ACATGT 1 cut(s) 314
PshAI GACNNNNGTC 1 cut(s) 117
Psp6I CCWGG 2 cut(s) 234, 418
PspFI CCCAGC 1 cut(s) 182
PspGI CCWGG 2 cut(s) 234, 418
PspN4I GGNNCC 2 cut(s) 113, 425
PspPI GGNCC 1 cut(s) 112
PsrI GAACNNNNNNTAC 1 cut(s) 33
PsuI RGATCY 1 cut(s) 535
RseI CAYNNNNRTG 2 cut(s) 317, 371
SatI GCNGC 5 cut(s) 81, 84, 139, 444, 495
Sau3AI GATC 5 cut(s) 321, 354, 535, 583, 609
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 5 cut(s) 197, 245, 318, 536, 551
ScrFI CCNGG 2 cut(s) 236, 420
SduI GDGCHC 1 cut(s) 217
SetI ASST 6 cut(s) 46, 245, 348, 384, 396, 579
SfaNI GCATC 2 cut(s) 187, 250
SfuI TTCGAA 2 cut(s) 7, 629
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 2 cut(s) 317, 371
Sse9I AATT 1 cut(s) 255
SsiI CCGC 7 cut(s) 21, 80, 139, 358, 369, 506, 513
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 2 cut(s) 234, 418
StyI CCWWGG 2 cut(s) 107, 527
TaaI ACNGT 1 cut(s) 569
TaiI ACGT 1 cut(s) 46
TaqI TCGA 4 cut(s) 7, 324, 579, 629
TasI AATT 1 cut(s) 255
TauI GCSGC 2 cut(s) 83, 141
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 3 cut(s) 270, 413, 574
TseFI GTSAC 6 cut(s) 295, 310, 362, 447, 554, 589
TseI GCWGC 3 cut(s) 83, 443, 494
Tsp45I GTSAC 6 cut(s) 295, 310, 362, 447, 554, 589
TspDTI ATGAA 4 cut(s) 186, 356, 389, 617
TspGWI ACGGA 2 cut(s) 269, 314
TspRI CASTG 3 cut(s) 270, 413, 574
VpaK11BI GGWCC 1 cut(s) 112
XceI RCATGY 2 cut(s) 318, 406
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.