Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006388.1

Orthogroup ID

OG0006421

Physical Location & Seq

Genomic Coordinates Reverse (-)

137811 .. 138452

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006388.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atggttcgcaccaaggttatcgctcgcatgggcgttaatcaacgccgcactctttctctagaagaagaaggtcgacaagcggccactcgcgctggcctcactcgccttggggaccgtcgtcgtcctcgcaaacgtagccgcaatcctccttctttgcctcgtcgttcccttaggatgcatcccagcgagtcctgttcctcccaagaaactcgtgctactcagcttgcggccactctggaaagctcgtctgactccattgatgctctgcgttcttctctccgcgatggtattatggtgacagattggcaggtcacaagcatgatcgattacatctctgacatgaacttctctttgattcactgtcacactgccatgaacaagcttgctctagaaatccagaacctgcagagtcatcctcctgggtttcccaacaaggacgctgttgcgtcactccatgcggacccccatcaggaggctgaaaccagcaagaaggctgccactcgcccacgcctcgttcctaatgtaccttgggaggatctcgacgccagtggtgattcacaagacagtgaagaggtctatgatcgaatcaccaagctcaaggaggagattgcagagctttcccattcaaagggggagaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.9

Weight (kDa)

8.6

Isoelectric Point (pI)

70.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006421)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c31g0501341 RchiOBHm_Chr1g0371701 RchiOBHm_Chr1g0371961 RchiOBHm_Chr2g0121361 RchiOBHm_Chr2g0123371 RchiOBHm_Chr2g0125601 RchiOBHm_Chr2g0125911 RchiOBHm_Chr2g0126281 RchiOBHm_Chr2g0126661 RchiOBHm_Chr2g0133861 RchiOBHm_Chr2g0147521 RchiOBHm_Chr2g0148851 RchiOBHm_Chr2g0156331 RchiOBHm_Chr2g0158501 RchiOBHm_Chr2g0159001 RchiOBHm_Chr3g0464581
rosa_multiflora	Rmu_sc0001192.1_g000013 Rmu_sc0006388.1_g000025 Rmu_sc0010640.1_g000009
rosa_roxburghii	Rroxscaffold_4G00292500 Rroxscaffold_4G00321780
rosa_samantha	Rh7DG327200
rosa_wichuraiana	Rw1G025310 Rw3G020540 Rw5G033820 Rw7G028260 Rw7G028560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	298, 411
AccI	GTMKAC	1 cut(s)	73
AccII	CGCG	2 cut(s)	90, 282
AciI	CCGC	6 cut(s)	46, 80, 139, 227, 280, 458
AclWI	GGATC	1 cut(s)	543
AcoI	YGGCCR	2 cut(s)	81, 228
AcyI	GRCGYC	1 cut(s)	543
AfaI	GTAC	1 cut(s)	525
AfiI	CCNNNNNNNGG	3 cut(s)	469, 472, 628
AgsI	TTSAA	1 cut(s)	627
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	5 cut(s)	223, 243, 382, 595, 616
AluI	AGCT	5 cut(s)	223, 243, 382, 595, 616
AlwI	GGATC	1 cut(s)	543
AlwNI	CAGNNNCTG	1 cut(s)	403
AoxI	GGCC	3 cut(s)	81, 94, 228
ApeKI	GCWGC	1 cut(s)	494
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	112, 460
AsuHPI	GGTGA	3 cut(s)	307, 563, 580
AvaII	GGWCC	2 cut(s)	112, 460
AxyI	CCTNAGG	1 cut(s)	170
BauI	CACGAG	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	2 cut(s)	278, 474
BciT130I	CCWGG	1 cut(s)	420
BfaI	CTAG	2 cut(s)	59, 389
BfmI	CTRYAG	1 cut(s)	404
BfuAI	ACCTGC	2 cut(s)	298, 411
BisI	GCNGC	5 cut(s)	46, 81, 139, 228, 495
BlsI	GCNGC	5 cut(s)	47, 82, 140, 229, 496
Bme1390I	CCNGG	1 cut(s)	420
Bme18I	GGWCC	2 cut(s)	112, 460
BmgT120I	GGNCC	2 cut(s)	112, 460
BmiI	GGNNCC	2 cut(s)	113, 462
BmrFI	CCNGG	1 cut(s)	420
BmsI	GCATC	3 cut(s)	165, 187, 250
BoxI	GACNNNNGTC	1 cut(s)	117
BplI	GAGNNNNNCTC	2 cut(s)	400, 432
BpuEI	CTTGAG	1 cut(s)	581
Bsa29I	ATCGAT	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	543
BsaJI	CCNNGG	4 cut(s)	12, 106, 419, 527
Bsc4I	CCNNNNNNNGG	3 cut(s)	469, 472, 628
Bse1I	ACTGG	1 cut(s)	546
Bse21I	CCTNAGG	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	420
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	4 cut(s)	12, 106, 419, 527
BseGI	GGATG	3 cut(s)	178, 180, 412
BseLI	CCNNNNNNNGG	3 cut(s)	469, 472, 628
BseMII	CTCAG	1 cut(s)	233
BseNI	ACTGG	1 cut(s)	546
BseRI	GAGGAG	1 cut(s)	617
BseXI	GCAGC	1 cut(s)	481
BseYI	CCCAGC	1 cut(s)	182
Bsh1236I	CGCG	2 cut(s)	90, 282
BshFI	GGCC	3 cut(s)	83, 96, 230
BshVI	ATCGAT	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	3 cut(s)	469, 472, 628
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	3 cut(s)	83, 96, 230
Bsp143I	GATC	3 cut(s)	321, 535, 580
BspACI	CCGC	6 cut(s)	46, 80, 139, 227, 280, 458
BspANI	GGCC	3 cut(s)	83, 96, 230
BspCNI	CTCAG	1 cut(s)	232
BspDI	ATCGAT	1 cut(s)	324
BspFNI	CGCG	2 cut(s)	90, 282
BspLI	GGNNCC	2 cut(s)	113, 462
BspMAI	CTGCAG	1 cut(s)	408
BspMI	ACCTGC	2 cut(s)	298, 411
BspPI	GGATC	1 cut(s)	543
BsrI	ACTGG	1 cut(s)	546
BssECI	CCNNGG	4 cut(s)	12, 106, 419, 527
BssMI	GATC	3 cut(s)	321, 535, 580
BssNI	GRCGYC	1 cut(s)	543
BssSI	CACGAG	1 cut(s)	210
BssT1I	CCWWGG	3 cut(s)	12, 106, 527
Bst2BI	CACGAG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	3 cut(s)	116, 362, 566
Bst6I	CTCTTC	1 cut(s)	564
BstACI	GRCGYC	1 cut(s)	543
BstC8I	GCNNGC	4 cut(s)	25, 94, 225, 384
BstDEI	CTNAG	2 cut(s)	170, 219
BstF5I	GGATG	3 cut(s)	178, 180, 412
BstFNI	CGCG	2 cut(s)	90, 282
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	3 cut(s)	324, 538, 583
BstMBI	GATC	3 cut(s)	321, 535, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 102, 135
BstNI	CCWGG	1 cut(s)	420
BstPAI	GACNNNNGTC	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	418
BstSFI	CTRYAG	1 cut(s)	404
BstUI	CGCG	2 cut(s)	90, 282
BstV1I	GCAGC	1 cut(s)	481
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
Bsu15I	ATCGAT	1 cut(s)	324
Bsu36I	CCTNAGG	1 cut(s)	170
BsuRI	GGCC	3 cut(s)	83, 96, 230
BsuTUI	ATCGAT	1 cut(s)	324
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	3 cut(s)	178, 180, 412
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	4 cut(s)	358, 366, 553, 571
BveI	ACCTGC	2 cut(s)	298, 411
Cac8I	GCNNGC	4 cut(s)	25, 94, 225, 384
CaiI	CAGNNNCTG	1 cut(s)	403
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	112, 460
ClaI	ATCGAT	1 cut(s)	324
CseI	GACGC	3 cut(s)	435, 446, 551
Csp6I	GTAC	1 cut(s)	524
CviAII	CATG	5 cut(s)	28, 319, 340, 373, 455
CviQI	GTAC	1 cut(s)	524
DdeI	CTNAG	2 cut(s)	170, 219
DpnI	GATC	3 cut(s)	323, 537, 582
DpnII	GATC	3 cut(s)	321, 535, 580
EaeI	YGGCCR	2 cut(s)	81, 228
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Eco130I	CCWWGG	3 cut(s)	12, 106, 527
Eco47I	GGWCC	2 cut(s)	112, 460
Eco81I	CCTNAGG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	418
EcoT14I	CCWWGG	3 cut(s)	12, 106, 527
EcoT22I	ATGCAT	1 cut(s)	180
ErhI	CCWWGG	3 cut(s)	12, 106, 527
FaeI	CATG	5 cut(s)	31, 322, 343, 376, 458
FaiI	YATR	7 cut(s)	29, 293, 320, 341, 374, 456, 579
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	5 cut(s)	27, 318, 339, 372, 454
FblI	GTMKAC	1 cut(s)	73
Fnu4HI	GCNGC	5 cut(s)	46, 81, 139, 228, 495
FokI	GGATG	3 cut(s)	165, 187, 399
Fsp4HI	GCNGC	5 cut(s)	46, 81, 139, 228, 495
FspBI	CTAG	2 cut(s)	59, 389
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	5 cut(s)	46, 81, 139, 228, 495
GsaI	CCCAGC	1 cut(s)	186
HaeIII	GGCC	3 cut(s)	83, 96, 230
HgaI	GACGC	3 cut(s)	435, 446, 551
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	543
Hin1II	CATG	5 cut(s)	31, 322, 343, 376, 458
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	74
HindII	GTYRAC	1 cut(s)	74
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	6 cut(s)	188, 251, 355, 409, 554, 585
HphI	GGTGA	3 cut(s)	307, 563, 580
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	2 cut(s)	250, 337
Hpy188III	TCNNGA	6 cut(s)	59, 236, 389, 397, 470, 539
Hpy8I	GTNNAC	1 cut(s)	74
Hpy99I	CGWCG	4 cut(s)	120, 123, 165, 545
HpyAV	CCTTC	3 cut(s)	62, 159, 484
HpyCH4III	ACNGT	3 cut(s)	116, 362, 566
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	178, 406, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 102, 135
HpyF3I	CTNAG	2 cut(s)	170, 219
HpySE526I	ACGT	1 cut(s)	133
Hsp92I	GRCGYC	1 cut(s)	543
Hsp92II	CATG	5 cut(s)	31, 322, 343, 376, 458
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	321, 535, 580
Lsp1109I	GCAGC	1 cut(s)	481
LweI	GCATC	3 cut(s)	165, 187, 250
MaeI	CTAG	2 cut(s)	59, 389
MaeII	ACGT	1 cut(s)	133
MaeIII	GTNAC	4 cut(s)	295, 310, 362, 447
MalI	GATC	3 cut(s)	323, 537, 582
MboI	GATC	3 cut(s)	321, 535, 580
MboII	GAAGA	4 cut(s)	74, 77, 264, 581
MflI	RGATCY	1 cut(s)	535
MlyI	GAGTC	3 cut(s)	197, 245, 418
Mph1103I	ATGCAT	1 cut(s)	180
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	2 cut(s)	317, 371
MspR9I	CCNGG	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	420
MvnI	CGCG	2 cut(s)	90, 282
MwoI	GCNNNNNNNGC	3 cut(s)	89, 102, 135
NdeII	GATC	3 cut(s)	321, 535, 580
NlaIII	CATG	5 cut(s)	31, 322, 343, 376, 458
NlaIV	GGNNCC	2 cut(s)	113, 462
NmuCI	GTSAC	4 cut(s)	295, 310, 362, 447
NsiI	ATGCAT	1 cut(s)	180
PfeI	GAWTC	3 cut(s)	355, 554, 585
PkrI	GCNGC	5 cut(s)	47, 82, 140, 229, 496
PleI	GAGTC	3 cut(s)	196, 245, 417
PpsI	GAGTC	3 cut(s)	196, 245, 417
PshAI	GACNNNNGTC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	418
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	2 cut(s)	113, 462
PspPI	GGNCC	2 cut(s)	112, 460
PstI	CTGCAG	1 cut(s)	408
PstNI	CAGNNNCTG	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
RseI	CAYNNNNRTG	2 cut(s)	317, 371
SalI	GTCGAC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	5 cut(s)	46, 81, 139, 228, 495
Sau3AI	GATC	3 cut(s)	321, 535, 580
Sau96I	GGNCC	2 cut(s)	112, 460
SchI	GAGTC	3 cut(s)	197, 245, 418
ScrFI	CCNGG	1 cut(s)	420
SfaNI	GCATC	3 cut(s)	165, 187, 250
SfcI	CTRYAG	1 cut(s)	404
SinI	GGWCC	2 cut(s)	112, 460
SmiMI	CAYNNNNRTG	2 cut(s)	317, 371
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
SsiI	CCGC	6 cut(s)	46, 80, 139, 227, 280, 458
SspMI	CTAG	2 cut(s)	59, 389
StyD4I	CCNGG	1 cut(s)	418
StyI	CCWWGG	3 cut(s)	12, 106, 527
TaaI	ACNGT	3 cut(s)	116, 362, 566
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	4 cut(s)	73, 324, 540, 583
TauI	GCSGC	4 cut(s)	48, 83, 141, 230
TfiI	GAWTC	3 cut(s)	355, 554, 585
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	4 cut(s)	365, 373, 553, 571
TseFI	GTSAC	4 cut(s)	295, 310, 362, 447
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	4 cut(s)	295, 310, 362, 447
TspDTI	ATGAA	2 cut(s)	356, 389
TspRI	CASTG	4 cut(s)	365, 373, 553, 571
VpaK11BI	GGWCC	2 cut(s)	112, 460
XbaI	TCTAGA	2 cut(s)	58, 388
XmiI	GTMKAC	1 cut(s)	73
XspI	CTAG	2 cut(s)	59, 389
Zsp2I	ATGCAT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.